feat: Multi-Directory Workspace Support (part 3: configuration in settings.json) (#5354)

Co-authored-by: Allen Hutchison <adh@google.com>

packages/cli/src/config/config.ts

@@ -29,6 +29,7 @@ import { Settings } from './settings.js';
 import { Extension, annotateActiveExtensions } from './extension.js';
 import { getCliVersion } from '../utils/version.js';
 import { loadSandboxConfig } from './sandboxConfig.js';
+import { resolvePath } from '../utils/resolvePath.js';
 
 // Simple console logger for now - replace with actual logger if available
 const logger = {
@@ -65,6 +66,7 @@ export interface CliArgs {
   ideModeFeature: boolean | undefined;
   proxy: string | undefined;
   includeDirectories: string[] | undefined;
+  loadMemoryFromIncludeDirectories: boolean | undefined;
 }
 
 export async function parseArguments(): Promise<CliArgs> {
@@ -212,6 +214,12 @@ export async function parseArguments(): Promise<CliArgs> {
         // Handle comma-separated values
         dirs.flatMap((dir) => dir.split(',').map((d) => d.trim())),
     })
+    .option('load-memory-from-include-directories', {
+      type: 'boolean',
+      description:
+        'If true, when refreshing memory, GEMINI.md files should be loaded from all directories that are added. If false, GEMINI.md files should only be loaded from the primary working directory.',
+      default: false,
+    })
     .version(await getCliVersion()) // This will enable the --version flag based on package.json
     .alias('v', 'version')
     .help()
@@ -239,6 +247,7 @@ export async function parseArguments(): Promise<CliArgs> {
 // TODO: Consider if App.tsx should get memory via a server call or if Config should refresh itself.
 export async function loadHierarchicalGeminiMemory(
   currentWorkingDirectory: string,
+  includeDirectoriesToReadGemini: readonly string[] = [],
   debugMode: boolean,
   fileService: FileDiscoveryService,
   settings: Settings,
@@ -264,6 +273,7 @@ export async function loadHierarchicalGeminiMemory(
   // Directly call the server function with the corrected path.
   return loadServerHierarchicalMemory(
     effectiveCwd,
+    includeDirectoriesToReadGemini,
     debugMode,
     fileService,
     extensionContextFilePaths,
@@ -325,9 +335,14 @@ export async function loadCliConfig(
     ...settings.fileFiltering,
   };
 
+  const includeDirectories = (settings.includeDirectories || [])
+    .map(resolvePath)
+    .concat((argv.includeDirectories || []).map(resolvePath));
+
   // Call the (now wrapper) loadHierarchicalGeminiMemory which calls the server's version
   const { memoryContent, fileCount } = await loadHierarchicalGeminiMemory(
     process.cwd(),
+    settings.loadMemoryFromIncludeDirectories ? includeDirectories : [],
     debugMode,
     fileService,
     settings,
@@ -393,7 +408,11 @@ export async function loadCliConfig(
     embeddingModel: DEFAULT_GEMINI_EMBEDDING_MODEL,
     sandbox: sandboxConfig,
     targetDir: process.cwd(),
-    includeDirectories: argv.includeDirectories,
+    includeDirectories,
+    loadMemoryFromIncludeDirectories:
+      argv.loadMemoryFromIncludeDirectories ||
+      settings.loadMemoryFromIncludeDirectories ||
+      false,
     debugMode,
     question: argv.promptInteractive || argv.prompt || '',
     fullContext: argv.allFiles || argv.all_files || false,