chore(release): v0.0.8-nightly.3

* feat: use .geminiignore in grep tool

.github/workflows/build-and-publish-image.yml

@@ -0,0 +1,65 @@
+name: Build and Publish Docker Image
+
+on:
+  push:
+    tags:
+      - 'v*'
+  workflow_dispatch:
+    inputs:
+      publish:
+        description: 'Publish to GHCR (only works on main branch)'
+        type: boolean
+        default: false
+
+env:
+  REGISTRY: ghcr.io
+  IMAGE_NAME: ${{ github.repository }}
+
+jobs:
+  build-and-push-to-ghcr:
+    runs-on: ubuntu-latest
+    permissions:
+      contents: read
+      packages: write
+
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4
+
+      - name: Set up QEMU
+        uses: docker/setup-qemu-action@v3
+
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v3
+
+      - name: Extract metadata (tags, labels) for Docker
+        id: meta
+        uses: docker/metadata-action@v5
+        with:
+          images: ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}
+          tags: |
+            type=ref,event=branch
+            type=ref,event=pr
+            type=semver,pattern={{version}}
+            type=semver,pattern={{major}}.{{minor}}
+            type=sha,prefix=sha-,format=short
+
+      - name: Log in to the Container registry
+        if: github.event_name != 'pull_request' && (github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/tags/v'))
+        uses: docker/login-action@v3
+        with:
+          registry: ${{ env.REGISTRY }}
+          username: ${{ github.actor }}
+          password: ${{ secrets.GITHUB_TOKEN }}
+
+      - name: Build and push Docker image
+        id: build-and-push
+        uses: docker/build-push-action@v6
+        with:
+          context: .
+          platforms: linux/amd64,linux/arm64
+          push: ${{ github.event_name != 'pull_request' && (github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/tags/v') || github.event.inputs.publish == 'true') }}
+          tags: ${{ steps.meta.outputs.tags }}
+          labels: ${{ steps.meta.outputs.labels }}
+          build-args: |
+            CLI_VERSION_ARG=${{ github.sha }}

.github/workflows/gemini-automated-issue-triage.yml

@@ -1,4 +1,4 @@
-name: Gemini Automated Issue Triage
+name: Qwen Automated Issue Triage
 
 on:
   issues:
@@ -7,7 +7,7 @@ on:
 jobs:
   triage-issue:
     timeout-minutes: 5
-    if: ${{ github.repository == 'google-gemini/gemini-cli' }}
+    if: ${{ github.repository == 'QwenLM/qwen-code' }}
     permissions:
       issues: write
       contents: read
@@ -17,22 +17,15 @@ jobs:
       cancel-in-progress: true
     runs-on: ubuntu-latest
     steps:
-      - name: Generate GitHub App Token
-        id: generate_token
-        uses: actions/create-github-app-token@df432ceedc7162793a195dd1713ff69aefc7379e # v2
-        with:
-          app-id: ${{ secrets.APP_ID }}
-          private-key: ${{ secrets.PRIVATE_KEY }}
-
-      - name: Run Gemini Issue Triage
-        uses: google-gemini/gemini-cli-action@df3f890f003d28c60a2a09d2c29e0126e4d1e2ff
+      - name: Run Qwen Issue Triage
+        uses: QwenLM/qwen-code-action@5fd6818d04d64e87d255ee4d5f77995e32fbf4c2
         env:
-          GITHUB_TOKEN: ${{ steps.generate_token.outputs.token }}
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          ISSUE_TITLE: ${{ github.event.issue.title }}
+          ISSUE_BODY: ${{ github.event.issue.body }}
         with:
-          version: 0.1.8-rc.0
-          GEMINI_API_KEY: ${{ secrets.GEMINI_API_KEY }}
-          OTLP_GCP_WIF_PROVIDER: ${{ secrets.OTLP_GCP_WIF_PROVIDER }}
-          OTLP_GOOGLE_CLOUD_PROJECT: ${{ secrets.OTLP_GOOGLE_CLOUD_PROJECT }}
+          version: 0.0.7
+          OPENAI_API_KEY: ${{ secrets.OPENAI_API_KEY }}
           settings_json: |
             {
               "coreTools": [
@@ -40,24 +33,100 @@ jobs:
                 "run_shell_command(gh issue edit)",
                 "run_shell_command(gh issue list)"
               ],
-              "telemetry": {
-                "enabled": true,
-                "target": "gcp"
-              },
               "sandbox": false
             }
           prompt: |
-            You are an issue triage assistant. Analyze the current GitHub issue and apply the most appropriate existing labels.
-
+            You are an issue triage assistant. Analyze the current GitHub issues apply the most appropriate existing labels. Do not remove labels titled help wanted or good first issue.
             Steps:
             1. Run: `gh label list --repo ${{ github.repository }} --limit 100` to get all available labels.
-            2. Review the issue title and body provided in the environment variables.
-            3. Select the most relevant labels from the existing labels, focusing on kind/*, area/*, and priority/*.
-            4. Apply the selected labels to this issue using: `gh issue edit ${{ github.event.issue.number }} --repo ${{ github.repository }} --add-label "label1,label2"`
-            5. If the issue has a "status/need-triage" label, remove it after applying the appropriate labels: `gh issue edit ${{ github.event.issue.number }} --repo ${{ github.repository }} --remove-label "status/need-triage"`
-
+            2. Review the issue title, body and any comments provided in the environment variables.
+            3. Ignore any existing priorities or tags on the issue. Just report your findings.
+            4. Select the most relevant labels from the existing labels, focusing on kind/*, area/*, sub-area/* and priority/*. For area/* and kind/* limit yourself to only the single most applicable label in each case. 
+            6. Apply the selected labels to this issue using: `gh issue edit ${{ github.event.issue.number }} --repo ${{ github.repository }} --add-label "label1,label2"`
+            7. For each issue please check if CLI version is present, this is usually in the output of the /about command  and will look like 0.1.5 for anything more than 6 versions older than the most recent should add the status/need-retesting label
+            8. If you see that the issue doesn’t look like it has sufficient information recommend the status/need-information label
+            9. Use Area definitions mentioned below to help you narrow down issues
             Guidelines:
             - Only use labels that already exist in the repository.
             - Do not add comments or modify the issue content.
             - Triage only the current issue.
-            - Assign all applicable kind/*, area/*, and priority/* labels based on the issue content.
+            - Apply only one area/ label
+            - Apply only one kind/ label
+            - Apply all applicable sub-area/* and priority/* labels based on the issue content. It's ok to have multiple of these.
+            - Once you categorize the issue if it needs information bump down the priority by 1 eg.. a p0 would become a p1 a p1 would become a p2. P2 and P3 can stay as is in this scenario.
+            Categorization Guidelines: 
+            P0: Critical / Blocker
+            - A P0 bug is a catastrophic failure that demands immediate attention. It represents a complete showstopper for a significant portion of users or for the development process itself.
+            Impact:
+            - Blocks development or testing for the entire team.
+            - Major security vulnerability that could compromise user data or system integrity.
+            - Causes data loss or corruption with no workaround.
+            - Crashes the application or makes a core feature completely unusable for all or most users in a production environment. Will it cause severe quality degration? Is it preventing contributors from contributing to the repository or is it a release blocker?
+            Qualifier: Is the main function of the software broken?
+            Example: The gemini auth login command fails with an unrecoverable error, preventing any user from authenticating and using the rest of the CLI.
+            P1: High
+            - A P1 bug is a serious issue that significantly degrades the user experience or impacts a core feature. While not a complete blocker, it's a major problem that needs a fast resolution. Feature requests are almost never P1.
+            Impact:
+            - A core feature is broken or behaving incorrectly for a large number of users or large number of use cases.
+            - Review the bug details and comments to try figure out if this issue affects a large set of use cases or if it's a narrow set of use cases.
+            - Severe performance degradation making the application frustratingly slow.
+            - No straightforward workaround exists, or the workaround is difficult and non-obvious.
+            Qualifier: Is a key feature unusable or giving very wrong results?
+            Example: The gemini -p "..." command consistently returns a malformed JSON response or an empty result, making the CLI's primary generation feature unreliable.
+            P2: Medium
+            - A P2 bug is a moderately impactful issue. It's a noticeable problem but doesn't prevent the use of the software's main functionality.
+            Impact:
+            - Affects a non-critical feature or a smaller, specific subset of users.
+            - An inconvenient but functional workaround is available and easy to execute.
+            - Noticeable UI/UX problems that don't break functionality but look unprofessional (e.g., elements are misaligned or overlapping).
+            Qualifier: Is it an annoying but non-blocking problem?
+            Example: An error message is unclear or contains a typo, causing user confusion but not halting their workflow.
+            P3: Low
+            - A P3 bug is a minor, low-impact issue that is trivial or cosmetic. It has little to no effect on the overall functionality of the application.
+            Impact:
+            - Minor cosmetic issues like color inconsistencies, typos in documentation, or slight alignment problems on a non-critical page.
+            - An edge-case bug that is very difficult to reproduce and affects a tiny fraction of users.
+            Qualifier: Is it a "nice-to-fix" issue?
+            Example: Spelling mistakes etc.
+            Things you should know:
+            - If users are talking about issues where the model gets downgraded from pro to flash then i want you to categorize that as a performance issue
+            - This product is designed to use different models eg.. using pro, downgrading to flash etc. when users report that they dont expect the model to change those would be categorized as feature requests.
+            Definition of Areas
+            area/ux: 
+            - Issues concerning user-facing elements like command usability, interactive features, help docs, and perceived performance.
+            - I am seeing my screen flicker when using Gemini CLI 
+            - I am seeing the output malformed 
+            - Theme changes aren't taking effect 
+            - My keyboard inputs arent' being recognzied
+            area/platform: 
+            - Issues related to installation, packaging, OS compatibility (Windows, macOS, Linux), and the underlying CLI framework.
+            area/background: Issues related to long-running background tasks, daemons, and autonomous or proactive agent features.
+            area/models: 
+            - i am not getting a response that is reasonable or expected. this can include things like
+            - I am calling a tool and the tool is not performing as expected.
+            - i am expecting a tool to be called and it is not getting called ,
+            - Including experience when using
+            - built-in tools (e.g., web search, code interpreter, read file, writefile, etc..),
+            - Function calling issues should be under this area
+            - i am getting responses from the model that are malformed.
+            - Issues concerning Gemini quality of response and inference,
+            - Issues talking about unnecessary token consumption.
+            - Issues talking about Model getting stuck in a loop be watchful as this could be the root cause for issues that otherwise seem like model performance issues.
+            - Memory compression
+            - unexpected responses,
+            - poor quality of generated code
+            area/tools: 
+            - These are primarily issues related to Model Context Protocol 
+            - These are issues that mention MCP support 
+            - feature requests asking for support for new tools. 
+            area/core: Issues with fundamental components like command parsing, configuration management, session state, and the main API client logic. Introducing multi-modality
+            area/contribution: Issues related to improving the developer contribution experience, such as CI/CD pipelines, build scripts, and test automation infrastructure.
+            area/authentication: Issues related to user identity, login flows, API key handling, credential storage, and access token management, unable to sign in selecting wrong authentication path etc..
+            area/security-privacy: Issues concerning vulnerability patching, dependency security, data sanitization, privacy controls, and preventing unauthorized data access.
+            area/extensibility: Issues related to the plugin system, extension APIs, or making the CLI's functionality available in other applications, github actions, ide support etc..
+            area/performance: Issues focused on model performance
+            - Issues with running out of capacity,
+            - 429 errors etc..
+            - could also pertain to latency,
+            - other general software performance like, memory usage, CPU consumption, and algorithmic efficiency.
+            - Switching models from one to the other unexpectedly.

.github/workflows/gemini-scheduled-issue-triage.yml

@@ -1,4 +1,4 @@
-name: Gemini Scheduled Issue Triage
+name: Qwen Scheduled Issue Triage
 
 on:
   schedule:
@@ -8,24 +8,17 @@ on:
 jobs:
   triage-issues:
     timeout-minutes: 10
-    if: ${{ github.repository == 'google-gemini/gemini-cli' }}
+    if: ${{ github.repository == 'QwenLM/qwen-code' }}
     runs-on: ubuntu-latest
     permissions:
       contents: read
       id-token: write
       issues: write
     steps:
-      - name: Generate GitHub App Token
-        id: generate_token
-        uses: actions/create-github-app-token@df432ceedc7162793a195dd1713ff69aefc7379e # v2
-        with:
-          app-id: ${{ secrets.APP_ID }}
-          private-key: ${{ secrets.PRIVATE_KEY }}
-
       - name: Find untriaged issues
         id: find_issues
         env:
-          GITHUB_TOKEN: ${{ steps.generate_token.outputs.token }}
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
         run: |
           echo "🔍 Finding issues without labels..."
           NO_LABEL_ISSUES=$(gh issue list --repo ${{ github.repository }} --search "is:open is:issue no:label" --json number,title,body)
@@ -41,60 +34,147 @@ jobs:
 
           echo "✅ Found $(echo "$ISSUES" | jq 'length') issues to triage! 🎯"
 
-      - name: Run Gemini Issue Triage
+      - name: Run Qwen Issue Triage
         if: steps.find_issues.outputs.issues_to_triage != '[]'
-        uses: google-gemini/gemini-cli-action@df3f890f003d28c60a2a09d2c29e0126e4d1e2ff
+        uses: QwenLM/qwen-code-action@5fd6818d04d64e87d255ee4d5f77995e32fbf4c2
         env:
-          GITHUB_TOKEN: ${{ steps.generate_token.outputs.token }}
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
           ISSUES_TO_TRIAGE: ${{ steps.find_issues.outputs.issues_to_triage }}
           REPOSITORY: ${{ github.repository }}
         with:
-          version: 0.1.8-rc.0
-          GEMINI_API_KEY: ${{ secrets.GEMINI_API_KEY }}
-          OTLP_GCP_WIF_PROVIDER: ${{ secrets.OTLP_GCP_WIF_PROVIDER }}
-          OTLP_GOOGLE_CLOUD_PROJECT: ${{ secrets.OTLP_GOOGLE_CLOUD_PROJECT }}
+          version: 0.0.7
+          OPENAI_API_KEY: ${{ secrets.OPENAI_API_KEY }}
+          OPENAI_BASE_URL: ${{ secrets.OPENAI_BASE_URL }}
+          OPENAI_MODEL: ${{ secrets.OPENAI_MODEL }}
           settings_json: |
             {
               "coreTools": [
                 "run_shell_command(echo)",
                 "run_shell_command(gh label list)",
                 "run_shell_command(gh issue edit)",
-                "run_shell_command(gh issue list)"
+                "run_shell_command(gh issue list)",
+                "run_shell_command(gh issue view)"
               ],
-              "telemetry": {
-                "enabled": true,
-                "target": "gcp"
-              },
               "sandbox": false
             }
           prompt: |
-            You are an issue triage assistant. Analyze issues and apply appropriate labels ONE AT A TIME.
-
-            Repository: ${{ github.repository }}
-
+            You are an issue triage assistant. Analyze the current GitHub issues apply the most appropriate existing labels. 
             Steps:
-            1. Run: `gh label list --repo ${{ github.repository }} --limit 100` to see available labels
+            1. Run: `gh label list --repo ${{ github.repository }} --limit 100` to get all available labels.
             2. Check environment variable for issues to triage: $ISSUES_TO_TRIAGE (JSON array of issues)
-            3. Parse the JSON array from step 2 and for EACH INDIVIDUAL issue, apply appropriate labels using separate commands:
-               - `gh issue edit ISSUE_NUMBER --repo ${{ github.repository }} --add-label "label1"`
-               - `gh issue edit ISSUE_NUMBER --repo ${{ github.repository }} --add-label "label2"`
-               - Continue for each label separately
-
-            IMPORTANT: Label each issue individually, one command per issue, one label at a time if needed.
-
-            Guidelines:
-            - Only use existing repository labels from step 1
-            - Do not add comments to issues
-            - Triage each issue independently based on title and body content
-            - Focus on applying: kind/* (bug/enhancement/documentation), area/* (core/cli/testing/windows), and priority/* labels
-            - If an issue has insufficient information, consider applying "status/need-information"
-            - After applying appropriate labels to an issue, remove the "status/need-triage" label if present: `gh issue edit ISSUE_NUMBER --repo ${{ github.repository }} --remove-label "status/need-triage"`
-            - Execute one `gh issue edit` command per issue, wait for success before proceeding to the next
-
-            Example triage logic:
-            - Issues with "bug", "error", "broken" → kind/bug
-            - Issues with "feature", "enhancement", "improve" → kind/enhancement
-            - Issues about Windows/performance → area/windows, area/performance
-            - Critical bugs → priority/p0, other bugs → priority/p1, enhancements → priority/p2
-
+            3. Review the issue title, body and any comments provided in the environment variables.
+            4. Ignore any existing priorities or tags on the issue.
+            5. Select the most relevant labels from the existing labels, focusing on kind/*, area/*, sub-area/* and priority/*. 
+            6. Get the list of labels already on the issue using `gh issue view ISSUE_NUMBER --repo ${{ github.repository }} --json labels -t '{{range .labels}}{{.name}}{{"\n"}}{{end}}'
+            7. For area/* and kind/* limit yourself to only the single most applicable label in each case. 
+            8. Give me a single short paragraph about why you are selecting each label in the process. use the format Issue ID: , Title, Label applied:, Label removed, ovearll explanation
+            9. Parse the JSON array from step 2 and for EACH INDIVIDUAL issue, apply appropriate labels using separate commands:
+              - `gh issue edit ISSUE_NUMBER --repo ${{ github.repository }} --add-label "label1"`
+              - `gh issue edit ISSUE_NUMBER --repo ${{ github.repository }} --add-label "label2"`
+              - Continue for each label separately
+              - IMPORTANT: Label each issue individually, one command per issue, one label at a time if needed.
+              - Make sure after you apply labels there is only one area/* and one kind/* label per issue.  
+              - To do this look for labels found in step 6 that no longer apply remove them one at a time using 
+              - `gh issue edit ISSUE_NUMBER --repo ${{ github.repository }} --remove-label "label-name1"`
+              - `gh issue edit ISSUE_NUMBER --repo ${{ github.repository }} --remove-label "label-name2"`
+              - IMPORTANT: Remove each label one at a time, one command per issue if needed.
+            10. For each issue please check if CLI version is present, this is usually in the output of the /about command and will look like 0.1.5 
+              - Anything more than 6 versions older than the most recent should add the status/need-retesting label
+            11. If you see that the issue doesn’t look like it has sufficient information recommend the status/need-information label
+              - After applying appropriate labels to an issue, remove the "status/need-triage" label if present: `gh issue edit ISSUE_NUMBER --repo ${{ github.repository }} --remove-label "status/need-triage"`
+              - Execute one `gh issue edit` command per issue, wait for success before proceeding to the next
             Process each issue sequentially and confirm each labeling operation before moving to the next issue.
+            Guidelines:
+              - Only use labels that already exist in the repository.
+              - Do not add comments or modify the issue content.
+              - Do not remove labels titled help wanted or good first issue.
+              - Triage only the current issue.
+              - Apply only one area/ label
+              - Apply only one kind/ label (Do not apply kind/duplicate or kind/parent-issue) 
+              - Apply all applicable sub-area/* and priority/* labels based on the issue content. It's ok to have multiple of these.
+              - Once you categorize the issue if it needs information bump down the priority by 1 eg.. a p0 would become a p1 a p1 would become a p2. P2 and P3 can stay as is in this scenario.
+            Categorization Guidelines: 
+            P0: Critical / Blocker
+              - A P0 bug is a catastrophic failure that demands immediate attention. It represents a complete showstopper for a significant portion of users or for the development process itself.
+              Impact:
+              - Blocks development or testing for the entire team.
+              - Major security vulnerability that could compromise user data or system integrity.
+              - Causes data loss or corruption with no workaround.
+              - Crashes the application or makes a core feature completely unusable for all or most users in a production environment. Will it cause severe quality degration? 
+              - Is it preventing contributors from contributing to the repository or is it a release blocker?
+              Qualifier: Is the main function of the software broken?
+              Example: The gemini auth login command fails with an unrecoverable error, preventing any user from authenticating and using the rest of the CLI.
+            P1: High
+              - A P1 bug is a serious issue that significantly degrades the user experience or impacts a core feature. While not a complete blocker, it's a major problem that needs a fast resolution. 
+              - Feature requests are almost never P1.
+              Impact:
+              - A core feature is broken or behaving incorrectly for a large number of users or large number of use cases.
+              - Review the bug details and comments to try figure out if this issue affects a large set of use cases or if it's a narrow set of use cases.
+              - Severe performance degradation making the application frustratingly slow.
+              - No straightforward workaround exists, or the workaround is difficult and non-obvious.
+              Qualifier: Is a key feature unusable or giving very wrong results?
+              Example: The gemini -p "..." command consistently returns a malformed JSON response or an empty result, making the CLI's primary generation feature unreliable.
+            P2: Medium
+              - A P2 bug is a moderately impactful issue. It's a noticeable problem but doesn't prevent the use of the software's main functionality.
+              Impact:
+              - Affects a non-critical feature or a smaller, specific subset of users.
+              - An inconvenient but functional workaround is available and easy to execute.
+              - Noticeable UI/UX problems that don't break functionality but look unprofessional (e.g., elements are misaligned or overlapping).
+              Qualifier: Is it an annoying but non-blocking problem?
+              Example: An error message is unclear or contains a typo, causing user confusion but not halting their workflow.
+            P3: Low
+              - A P3 bug is a minor, low-impact issue that is trivial or cosmetic. It has little to no effect on the overall functionality of the application.
+              Impact:
+              - Minor cosmetic issues like color inconsistencies, typos in documentation, or slight alignment problems on a non-critical page.
+              - An edge-case bug that is very difficult to reproduce and affects a tiny fraction of users.
+              Qualifier: Is it a "nice-to-fix" issue?
+              Example: Spelling mistakes etc.
+            Additional Context: 
+              - If users are talking about issues where the model gets downgraded from pro to flash then i want you to categorize that as a performance issue
+              - This product is designed to use different models eg.. using pro, downgrading to flash etc. 
+              - When users report that they dont expect the model to change those would be categorized as feature requests.
+            Definition of Areas
+            area/ux: 
+              - Issues concerning user-facing elements like command usability, interactive features, help docs, and perceived performance.
+              - I am seeing my screen flicker when using Gemini CLI 
+              - I am seeing the output malformed 
+              - Theme changes aren't taking effect 
+              - My keyboard inputs arent' being recognzied
+            area/platform: 
+              - Issues related to installation, packaging, OS compatibility (Windows, macOS, Linux), and the underlying CLI framework.
+            area/background: Issues related to long-running background tasks, daemons, and autonomous or proactive agent features.
+            area/models: 
+              - i am not getting a response that is reasonable or expected. this can include things like
+              - I am calling a tool and the tool is not performing as expected.
+              - i am expecting a tool to be called and it is not getting called ,
+              - Including experience when using
+              - built-in tools (e.g., web search, code interpreter, read file, writefile, etc..),
+              - Function calling issues should be under this area
+              - i am getting responses from the model that are malformed.
+              - Issues concerning Gemini quality of response and inference,
+              - Issues talking about unnecessary token consumption.
+              - Issues talking about Model getting stuck in a loop be watchful as this could be the root cause for issues that otherwise seem like model performance issues.
+              - Memory compression
+              - unexpected responses,
+              - poor quality of generated code
+            area/tools: 
+              - These are primarily issues related to Model Context Protocol 
+              - These are issues that mention MCP support 
+              - feature requests asking for support for new tools. 
+            area/core: 
+              - Issues with fundamental components like command parsing, configuration management, session state, and the main API client logic. Introducing multi-modality
+            area/contribution: 
+              - Issues related to improving the developer contribution experience, such as CI/CD pipelines, build scripts, and test automation infrastructure.
+            area/authentication: 
+              -  Issues related to user identity, login flows, API key handling, credential storage, and access token management, unable to sign in selecting wrong authentication path etc..
+            area/security-privacy: 
+              - Issues concerning vulnerability patching, dependency security, data sanitization, privacy controls, and preventing unauthorized data access.
+            area/extensibility: 
+              - Issues related to the plugin system, extension APIs, or making the CLI's functionality available in other applications, github actions, ide support etc..
+            area/performance: 
+              - Issues focused on model performance
+              - Issues with running out of capacity,
+              - 429 errors etc..
+              - could also pertain to latency,
+              - other general software performance like, memory usage, CPU consumption, and algorithmic efficiency.
+              - Switching models from one to the other unexpectedly.

.github/workflows/gemini-scheduled-pr-triage.yml

@@ -1,4 +1,4 @@
-name: Gemini Scheduled PR Triage 🚀
+name: Qwen Scheduled PR Triage 🚀
 
 on:
   schedule:
@@ -8,7 +8,7 @@ on:
 jobs:
   audit-prs:
     timeout-minutes: 15
-    if: ${{ github.repository == 'google-gemini/gemini-cli' }}
+    if: ${{ github.repository == 'QwenLM/qwen-code' }}
     permissions:
       contents: read
       id-token: write
@@ -21,16 +21,9 @@ jobs:
       - name: Checkout repository
         uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4
 
-      - name: Generate GitHub App Token
-        id: generate_token
-        uses: actions/create-github-app-token@df432ceedc7162793a195dd1713ff69aefc7379e # v2
-        with:
-          app-id: ${{ secrets.APP_ID }}
-          private-key: ${{ secrets.PRIVATE_KEY }}
-
       - name: Run PR Triage Script
         id: run_triage
         env:
-          GITHUB_TOKEN: ${{ steps.generate_token.outputs.token }}
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
           GITHUB_REPOSITORY: ${{ github.repository }}
         run: ./.github/scripts/pr-triage.sh

.github/workflows/no-response.yml

@@ -0,0 +1,32 @@
+name: No Response
+
+# Run as a daily cron at 1:45 AM
+on:
+  schedule:
+    - cron: '45 1 * * *'
+  workflow_dispatch: {}
+
+jobs:
+  no-response:
+    runs-on: ubuntu-latest
+    if: ${{ github.repository == 'google-gemini/gemini-cli' }}
+    permissions:
+      issues: write
+      pull-requests: write
+    concurrency:
+      group: ${{ github.workflow }}-no-response
+      cancel-in-progress: true
+    steps:
+      - uses: actions/stale@5bef64f19d7facfb25b37b414482c7164d639639
+        with:
+          repo-token: ${{ secrets.GITHUB_TOKEN }}
+          days-before-stale: -1
+          days-before-close: 14
+          stale-issue-label: 'status/need-information'
+          close-issue-message: >
+            This issue was marked as needing more information and has not received a response in 14 days.
+            Closing it for now. If you still face this problem, feel free to reopen with more details. Thank you!
+          stale-pr-label: 'status/need-information'
+          close-pr-message: >
+            This pull request was marked as needing more information and has had no updates in 14 days.
+            Closing it for now. You are welcome to reopen with the required info. Thanks for contributing!

.github/workflows/qwen-code-pr-review.yml

@@ -0,0 +1,195 @@
+name: 🧐 Qwen Pull Request Review
+
+on:
+  pull_request_target:
+    types: [opened]
+  pull_request_review_comment:
+    types: [created]
+  pull_request_review:
+    types: [submitted]
+  workflow_dispatch:
+    inputs:
+      pr_number:
+        description: 'PR number to review'
+        required: true
+        type: number
+
+jobs:
+  review-pr:
+    if: >
+      github.event_name == 'workflow_dispatch' ||
+      (github.event_name == 'pull_request_target' && 
+       github.event.action == 'opened' &&
+       (github.event.pull_request.author_association == 'OWNER' ||
+        github.event.pull_request.author_association == 'MEMBER' ||
+        github.event.pull_request.author_association == 'COLLABORATOR')) ||
+      (github.event_name == 'issue_comment' &&
+        github.event.issue.pull_request &&
+        contains(github.event.comment.body, '@qwen /review') &&
+        (github.event.comment.author_association == 'OWNER' ||
+         github.event.comment.author_association == 'MEMBER' ||
+         github.event.comment.author_association == 'COLLABORATOR')) ||
+      (github.event_name == 'pull_request_review_comment' &&
+        contains(github.event.comment.body, '@qwen /review') &&
+        (github.event.comment.author_association == 'OWNER' ||
+         github.event.comment.author_association == 'MEMBER' ||
+         github.event.comment.author_association == 'COLLABORATOR')) ||
+      (github.event_name == 'pull_request_review' &&
+        contains(github.event.review.body, '@qwen /review') &&
+        (github.event.review.author_association == 'OWNER' ||
+         github.event.review.author_association == 'MEMBER' ||
+         github.event.review.author_association == 'COLLABORATOR'))
+    timeout-minutes: 15
+    runs-on: ubuntu-latest
+    permissions:
+      contents: read
+      id-token: write
+      pull-requests: write
+      issues: write
+    steps:
+      - name: Checkout PR code
+        uses: actions/checkout@v4
+        with:
+          token: ${{ secrets.GITHUB_TOKEN }}
+          fetch-depth: 0
+
+      - name: Get PR details (pull_request_target & workflow_dispatch)
+        id: get_pr
+        if: github.event_name == 'pull_request_target' || github.event_name == 'workflow_dispatch'
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+        run: |
+          if [ "${{ github.event_name }}" = "workflow_dispatch" ]; then
+            PR_NUMBER=${{ github.event.inputs.pr_number }}
+          else
+            PR_NUMBER=${{ github.event.pull_request.number }}
+          fi
+          echo "pr_number=$PR_NUMBER" >> "$GITHUB_OUTPUT"
+          # Get PR details
+          PR_DATA=$(gh pr view $PR_NUMBER --json title,body,additions,deletions,changedFiles,baseRefName,headRefName)
+          echo "pr_data=$PR_DATA" >> "$GITHUB_OUTPUT"
+          # Get file changes
+          CHANGED_FILES=$(gh pr diff $PR_NUMBER --name-only)
+          echo "changed_files<<EOF" >> "$GITHUB_OUTPUT"
+          echo "$CHANGED_FILES" >> "$GITHUB_OUTPUT"
+          echo "EOF" >> "$GITHUB_OUTPUT"
+
+      - name: Get PR details (issue_comment)
+        id: get_pr_comment
+        if: github.event_name == 'issue_comment'
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          COMMENT_BODY: ${{ github.event.comment.body }}
+        run: |
+          PR_NUMBER=${{ github.event.issue.number }}
+          echo "pr_number=$PR_NUMBER" >> "$GITHUB_OUTPUT"
+          # Extract additional instructions from comment
+          ADDITIONAL_INSTRUCTIONS=$(echo "$COMMENT_BODY" | sed 's/.*@qwen \/review//' | xargs)
+          echo "additional_instructions=$ADDITIONAL_INSTRUCTIONS" >> "$GITHUB_OUTPUT"
+          # Get PR details
+          PR_DATA=$(gh pr view $PR_NUMBER --json title,body,additions,deletions,changedFiles,baseRefName,headRefName)
+          echo "pr_data=$PR_DATA" >> "$GITHUB_OUTPUT"
+          # Get file changes
+          CHANGED_FILES=$(gh pr diff $PR_NUMBER --name-only)
+          echo "changed_files<<EOF" >> "$GITHUB_OUTPUT"
+          echo "$CHANGED_FILES" >> "$GITHUB_OUTPUT"
+          echo "EOF" >> "$GITHUB_OUTPUT"
+
+      - name: Run Qwen PR Review
+        uses: QwenLM/qwen-code-action@5fd6818d04d64e87d255ee4d5f77995e32fbf4c2
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          PR_NUMBER: ${{ steps.get_pr.outputs.pr_number || steps.get_pr_comment.outputs.pr_number }}
+          PR_DATA: ${{ steps.get_pr.outputs.pr_data || steps.get_pr_comment.outputs.pr_data }}
+          CHANGED_FILES: ${{ steps.get_pr.outputs.changed_files || steps.get_pr_comment.outputs.changed_files }}
+          ADDITIONAL_INSTRUCTIONS: ${{ steps.get_pr.outputs.additional_instructions || steps.get_pr_comment.outputs.additional_instructions }}
+          REPOSITORY: ${{ github.repository }}
+        with:
+          OPENAI_API_KEY: ${{ secrets.OPENAI_API_KEY }}
+          OPENAI_BASE_URL: ${{ secrets.OPENAI_BASE_URL }}
+          OPENAI_MODEL: ${{ secrets.OPENAI_MODEL }}
+          settings_json: |
+            {
+              "coreTools": [
+                "run_shell_command(echo)",
+                "run_shell_command(gh pr view)",
+                "run_shell_command(gh pr diff)",
+                "run_shell_command(gh pr comment)",
+                "run_shell_command(cat)",
+                "run_shell_command(head)",
+                "run_shell_command(tail)",
+                "run_shell_command(grep)",
+                "write_file"
+              ],
+              "sandbox": false
+            }
+          prompt: |
+            You are an expert code reviewer. You have access to shell commands to gather PR information and perform the review.
+
+            IMPORTANT: Use the available shell commands to gather information. Do not ask for information to be provided.
+
+            Start by running these commands to gather the required data:
+            1. Run: echo "$PR_DATA" to get PR details (JSON format)
+            2. Run: echo "$CHANGED_FILES" to get the list of changed files
+            3. Run: echo "$PR_NUMBER" to get the PR number
+            4. Run: echo "$ADDITIONAL_INSTRUCTIONS" to see any specific review instructions from the user
+            5. Run: gh pr diff $PR_NUMBER to see the full diff
+            6. For any specific files, use: cat filename, head -50 filename, or tail -50 filename
+
+            Additional Review Instructions:
+            If ADDITIONAL_INSTRUCTIONS contains text, prioritize those specific areas or focus points in your review.
+            Common instruction examples: "focus on security", "check performance", "review error handling", "check for breaking changes"
+
+            Once you have the information, provide a comprehensive code review by:
+            1. Writing your review to a file: write_file("review.md", "<your detailed review feedback here>")
+            2. Posting the review: gh pr comment $PR_NUMBER --body-file review.md --repo $REPOSITORY
+
+            Review Areas:
+            - **Security**: Authentication, authorization, input validation, data sanitization
+            - **Performance**: Algorithms, database queries, caching, resource usage
+            - **Reliability**: Error handling, logging, testing coverage, edge cases
+            - **Maintainability**: Code structure, documentation, naming conventions
+            - **Functionality**: Logic correctness, requirements fulfillment
+
+            Output Format:
+            Structure your review using this exact format with markdown:
+
+            ## 📋 Review Summary
+            Provide a brief 2-3 sentence overview of the PR and overall assessment.
+
+            ## 🔍 General Feedback
+            - List general observations about code quality
+            - Mention overall patterns or architectural decisions
+            - Highlight positive aspects of the implementation
+            - Note any recurring themes across files
+
+            ## 🎯 Specific Feedback
+            Only include sections below that have actual issues. If there are no issues in a priority category, omit that entire section.
+
+            ### 🔴 Critical
+            (Only include this section if there are critical issues)
+            Issues that must be addressed before merging (security vulnerabilities, breaking changes, major bugs):
+            - **File: `filename:line`** - Description of critical issue with specific recommendation
+
+            ### 🟡 High
+            (Only include this section if there are high priority issues)
+            Important issues that should be addressed (performance problems, design flaws, significant bugs):
+            - **File: `filename:line`** - Description of high priority issue with suggested fix
+
+            ### 🟢 Medium
+            (Only include this section if there are medium priority issues)
+            Improvements that would enhance code quality (style issues, minor optimizations, better practices):
+            - **File: `filename:line`** - Description of medium priority improvement
+
+            ### 🔵 Low
+            (Only include this section if there are suggestions)
+            Nice-to-have improvements and suggestions (documentation, naming, minor refactoring):
+            - **File: `filename:line`** - Description of suggestion or enhancement
+
+            **Note**: If no specific issues are found in any category, simply state "No specific issues identified in this review."
+
+            ## ✅ Highlights
+            (Only include this section if there are positive aspects to highlight)
+            - Mention specific good practices or implementations
+            - Acknowledge well-written code sections
+            - Note improvements from previous versions

.github/workflows/stale.yml

@@ -0,0 +1,38 @@
+name: Mark stale issues and pull requests
+
+# Run as a daily cron at 1:30 AM
+on:
+  schedule:
+    - cron: '30 1 * * *'
+  workflow_dispatch: {}
+
+jobs:
+  stale:
+    runs-on: ubuntu-latest
+    if: ${{ github.repository == 'google-gemini/gemini-cli' }}
+    permissions:
+      issues: write
+      pull-requests: write
+    concurrency:
+      group: ${{ github.workflow }}-stale
+      cancel-in-progress: true
+    steps:
+      - uses: actions/stale@5bef64f19d7facfb25b37b414482c7164d639639
+        with:
+          repo-token: ${{ secrets.GITHUB_TOKEN }}
+          stale-issue-message: >
+            This issue has been automatically marked as stale due to 60 days of inactivity.
+            It will be closed in 14 days if no further activity occurs.
+          stale-pr-message: >
+            This pull request has been automatically marked as stale due to 60 days of inactivity.
+            It will be closed in 14 days if no further activity occurs.
+          close-issue-message: >
+            This issue has been closed due to 14 additional days of inactivity after being marked as stale.
+            If you believe this is still relevant, feel free to comment or reopen the issue. Thank you!
+          close-pr-message: >
+            This pull request has been closed due to 14 additional days of inactivity after being marked as stale.
+            If this is still relevant, you are welcome to reopen or leave a comment. Thanks for contributing!
+          days-before-stale: 60
+          days-before-close: 14
+          exempt-issue-labels: pinned,security
+          exempt-pr-labels: pinned,security

.npmrc

@@ -1 +1 @@
-@google:registry=https://wombat-dressing-room.appspot.com
+registry=https://registry.npmjs.org

.vscode/launch.json

@@ -50,7 +50,7 @@
       "type": "node",
       // fix source mapping when debugging in sandbox using global installation
       // note this does not interfere when remoteRoot is also ${workspaceFolder}/packages
-      "remoteRoot": "/usr/local/share/npm-global/lib/node_modules/@gemini-cli",
+      "remoteRoot": "/usr/local/share/npm-global/lib/node_modules/@qwen-code",
       "localRoot": "${workspaceFolder}/packages"
     },
     {

CHANGELOG.md

@@ -0,0 +1,26 @@
+# Changelog
+
+## 0.0.7
+
+- Fix MCP tools
+- Fix Web Fetch tool
+- Fix Web Search tool, by replacing web search from Google/Gemini to Tavily API
+- Fix: Compatible with occasional tool call parameters returned by LLM that are invalid JSON
+- Fix: prevent concurrent query submissions on some rare cases
+- Fix: incorrect qwen logger exit handler setup
+- Fix: seperate static QR code and dynamic spin components
+- Sync gemini-cli to v0.1.18
+
+## 0.0.6
+
+- Add usage statistics logging for Qwen integration
+- Make `/init` command respect configured context filename and align docs with QWEN.md
+- Fix EPERM error when run `qwen --sandbox` in macOS
+- Fix terminal flicker when waiting for login
+- Fix `glm-4.5` model request error
+
+## 0.0.5
+
+- Support Qwen OAuth login and provide up to 2000 free requests per day
+- Sync gemini-cli to v0.1.17
+- Add systemPromptMappings Configuration Feature

CONTRIBUTING.md

@@ -242,6 +242,8 @@ To hit a breakpoint inside the sandbox container run:
 DEBUG=1 gemini
 ```
 
+**Note:** If you have `DEBUG=true` in a project's `.env` file, it won't affect gemini-cli due to automatic exclusion. Use `.gemini/.env` files for gemini-cli specific debug settings.
+
 ### React DevTools
 
 To debug the CLI's React-based UI, you can use React DevTools. Ink, the library used for the CLI's interface, is compatible with React DevTools version 4.x.

Dockerfile

@@ -1,3 +1,31 @@
+# Build stage
+FROM docker.io/library/node:20-slim AS builder
+
+# Install build dependencies
+RUN apt-get update && apt-get install -y --no-install-recommends \
+  python3 \
+  make \
+  g++ \
+  git \
+  && apt-get clean \
+  && rm -rf /var/lib/apt/lists/*
+
+# Set up npm global package folder
+RUN mkdir -p /usr/local/share/npm-global
+ENV NPM_CONFIG_PREFIX=/usr/local/share/npm-global
+ENV PATH=$PATH:/usr/local/share/npm-global/bin
+
+# Copy source code
+COPY . /home/node/app
+WORKDIR /home/node/app
+
+# Install dependencies and build packages
+RUN npm ci \
+  && npm run build --workspaces \
+  && npm pack -w @qwen-code/qwen-code --pack-destination ./packages/cli/dist \
+  && npm pack -w @qwen-code/qwen-code-core --pack-destination ./packages/core/dist
+
+# Runtime stage
 FROM docker.io/library/node:20-slim
 
 ARG SANDBOX_NAME="qwen-code-sandbox"
@@ -5,11 +33,9 @@ ARG CLI_VERSION_ARG
 ENV SANDBOX="$SANDBOX_NAME"
 ENV CLI_VERSION=$CLI_VERSION_ARG
 
-# install minimal set of packages, then clean up
+# Install runtime dependencies
 RUN apt-get update && apt-get install -y --no-install-recommends \
   python3 \
-  make \
-  g++ \
   man-db \
   curl \
   dnsutils \
@@ -29,22 +55,19 @@ RUN apt-get update && apt-get install -y --no-install-recommends \
   && apt-get clean \
   && rm -rf /var/lib/apt/lists/*
 
-# set up npm global package folder under /usr/local/share
-# give it to non-root user node, already set up in base image
-RUN mkdir -p /usr/local/share/npm-global \
-  && chown -R node:node /usr/local/share/npm-global
+# Set up npm global package folder
+RUN mkdir -p /usr/local/share/npm-global
 ENV NPM_CONFIG_PREFIX=/usr/local/share/npm-global
 ENV PATH=$PATH:/usr/local/share/npm-global/bin
 
-# switch to non-root user node
-USER node
+# Copy built packages from builder stage
+COPY --from=builder /home/node/app/packages/cli/dist/*.tgz /tmp/
+COPY --from=builder /home/node/app/packages/core/dist/*.tgz /tmp/
 
-# install qwen-code and clean up
-COPY packages/cli/dist/qwen-code-*.tgz /usr/local/share/npm-global/qwen-code.tgz
-COPY packages/core/dist/qwen-code-qwen-code-core-*.tgz /usr/local/share/npm-global/qwen-code-core.tgz
-RUN npm install -g /usr/local/share/npm-global/qwen-code.tgz /usr/local/share/npm-global/qwen-code-core.tgz \
+# Install built packages globally
+RUN npm install -g /tmp/*.tgz \
   && npm cache clean --force \
-  && rm -f /usr/local/share/npm-global/qwen-{code,code-core}.tgz
+  && rm -rf /tmp/*.tgz
 
-# default entrypoint when none specified
-CMD ["qwen"]
+# Default entrypoint when none specified
+CMD ["qwen"]

LICENSE

@@ -188,6 +188,7 @@
       identification within third-party archives.
 
   Copyright 2025 Google LLC
+  Copyright 2025 Qwen
 
    Licensed under the Apache License, Version 2.0 (the "License");
    you may not use this file except in compliance with the License.

Makefile

@@ -53,7 +53,7 @@ debug:
 
 
 run-npx:
-	npx https://github.com/google-gemini/gemini-cli
+	npx https://github.com/QwenLM/qwen-code
 
 create-alias:
 	scripts/create_alias.sh

README.md

@@ -17,10 +17,27 @@
 
 Qwen Code is a powerful command-line AI workflow tool adapted from [**Gemini CLI**](https://github.com/google-gemini/gemini-cli) ([details](./README.gemini.md)), specifically optimized for [Qwen3-Coder](https://github.com/QwenLM/Qwen3-Coder) models. It enhances your development workflow with advanced code understanding, automated tasks, and intelligent assistance.
 
+## 💡 Free Options Available
+
+Get started with Qwen Code at no cost using any of these free options:
+
+### 🔥 Qwen OAuth (Recommended)
+
+- **2,000 requests per day** with no token limits
+- **60 requests per minute** rate limit
+- Simply run `qwen` and authenticate with your qwen.ai account
+- Automatic credential management and refresh
+- Use `/auth` command to switch to Qwen OAuth if you have initialized with OpenAI compatible mode
+
+### 🌏 Regional Free Tiers
+
+- **Mainland China**: ModelScope offers **2,000 free API calls per day**
+- **International**: OpenRouter provides **up to 1,000 free API calls per day** worldwide
+
+For detailed setup instructions, see [Authorization](#authorization).
+
 > [!WARNING]
 > **Token Usage Notice**: Qwen Code may issue multiple API calls per cycle, resulting in higher token usage (similar to Claude Code). We're actively optimizing API efficiency.
->
-> 💡 **Free Option**: ModelScope provides **2,000 free API calls per day** for users in mainland China. OpenRouter offers up to **1,000 free API calls per day** worldwide. For setup instructions, see [API Configuration](#api-configuration).
 
 ## Key Features
 
@@ -84,15 +101,43 @@ Create or edit `.qwen/settings.json` in your home directory:
 
 - **`/compress`** - Compress conversation history to continue within token limits
 - **`/clear`** - Clear all conversation history and start fresh
-- **`/status`** - Check current token usage and limits
+- **`/stats`** - Check current token usage and limits
 
 > 📝 **Note**: Session token limit applies to a single conversation, not cumulative API calls.
 
-### API Configuration
+### Authorization
 
-Qwen Code supports multiple API providers. You can configure your API key through environment variables or a `.env` file in your project root.
+Choose your preferred authentication method based on your needs:
 
-#### Configuration Methods
+#### 1. Qwen OAuth (🚀 Recommended - Start in 30 seconds)
+
+The easiest way to get started - completely free with generous quotas:
+
+```bash
+# Just run this command and follow the browser authentication
+qwen
+```
+
+**What happens:**
+
+1. **Instant Setup**: CLI opens your browser automatically
+2. **One-Click Login**: Authenticate with your qwen.ai account
+3. **Automatic Management**: Credentials cached locally for future use
+4. **No Configuration**: Zero setup required - just start coding!
+
+**Free Tier Benefits:**
+
+- ✅ **2,000 requests/day** (no token counting needed)
+- ✅ **60 requests/minute** rate limit
+- ✅ **Automatic credential refresh**
+- ✅ **Zero cost** for individual users
+- ℹ️ **Note**: Model fallback may occur to maintain service quality
+
+#### 2. OpenAI-Compatible API
+
+Use API keys for OpenAI or other compatible providers:
+
+**Configuration Methods:**
 
 1. **Environment Variables**
 
@@ -110,7 +155,7 @@ Qwen Code supports multiple API providers. You can configure your API key throug
    OPENAI_MODEL=your_model_choice
    ```
 
-#### API Provider Options
+**API Provider Options**
 
 > ⚠️ **Regional Notice:**
 >
@@ -265,7 +310,7 @@ qwen
 - `/help` - Display available commands
 - `/clear` - Clear conversation history
 - `/compress` - Compress history to save tokens
-- `/status` - Show current session information
+- `/stats` - Show current session information
 - `/exit` or `/quit` - Exit Qwen Code
 
 ### Keyboard Shortcuts
@@ -287,6 +332,8 @@ qwen
 
 See [CONTRIBUTING.md](./CONTRIBUTING.md) to learn how to contribute to the project.
 
+For detailed authentication setup, see the [authentication guide](./docs/cli/authentication.md).
+
 ## Troubleshooting
 
 If you encounter issues, check the [troubleshooting guide](docs/troubleshooting.md).

ROADMAP.md

@@ -1,4 +1,4 @@
-# Gemini CLI Roadmap
+# Qwen CLI Roadmap
 
 The [Official Gemini CLI Roadmap](https://github.com/orgs/google-gemini/projects/11/)
 
@@ -56,7 +56,7 @@ find initiatives that interest you.
 Gemini CLI is an open-source project, and we welcome contributions from the community! Whether you're a developer, a designer, or just an enthusiastic user you can find our [Community Guidelines here](https://github.com/google-gemini/gemini-cli/blob/main/CONTRIBUTING.md) to learn how to get started. There are many ways to get involved:
 
 - **Roadmap:** Please review and find areas in our [roadmap](https://github.com/google-gemini/gemini-cli/issues/4191) that you would like to contribute to. Contributions based on this will be easiest to integrate with.
-- **Report Bugs:** If you find an issue, please create a bug(https://github.com/google-gemini/gemini-cli/issues/new?template=bug_report.yml) with as much detail as possible. If you believe it is a critical breaking issue preventing direct CLI usage, please tag it as `priorty/p0`.
+- **Report Bugs:** If you find an issue, please create a [bug](https://github.com/google-gemini/gemini-cli/issues/new?template=bug_report.yml) with as much detail as possible. If you believe it is a critical breaking issue preventing direct CLI usage, please tag it as `priority/p0`.
 - **Suggest Features:** Have a great idea? We'd love to hear it! Open a [feature request](https://github.com/google-gemini/gemini-cli/issues/new?template=feature_request.yml).
 - **Contribute Code:** Check out our [CONTRIBUTING.md](https://github.com/google-gemini/gemini-cli/blob/main/CONTRIBUTING.md) file for guidelines on how to submit pull requests. We have a list of "good first issues" for new contributors.
 - **Write Documentation:** Help us improve our documentation, tutorials, and examples.

SECURITY.md

@@ -0,0 +1,8 @@
+# Reporting Security Issues
+
+To report a security issue, please use [https://g.co/vulnz](https://g.co/vulnz).
+We use g.co/vulnz for our intake, and do coordination and disclosure here on
+GitHub (including using GitHub Security Advisory). The Google Security Team will
+respond within 5 working days of your report on g.co/vulnz.
+
+[GitHub Security Advisory]: https://github.com/google-gemini/gemini-cli/security/advisories

docs/cli/authentication.md

@@ -1,104 +1,93 @@
 # Authentication Setup
 
-The Gemini CLI requires you to authenticate with Google's AI services. On initial startup you'll need to configure **one** of the following authentication methods:
+Qwen Code supports two main authentication methods to access AI models. Choose the method that best fits your use case:
 
-1.  **Login with Google (Gemini Code Assist):**
-    - Use this option to log in with your google account.
-    - During initial startup, Gemini CLI will direct you to a webpage for authentication. Once authenticated, your credentials will be cached locally so the web login can be skipped on subsequent runs.
-    - Note that the web login must be done in a browser that can communicate with the machine Gemini CLI is being run from. (Specifically, the browser will be redirected to a localhost url that Gemini CLI will be listening on).
-    - <a id="workspace-gca">Users may have to specify a GOOGLE_CLOUD_PROJECT if:</a>
-      1. You have a Google Workspace account. Google Workspace is a paid service for businesses and organizations that provides a suite of productivity tools, including a custom email domain (e.g. your-name@your-company.com), enhanced security features, and administrative controls. These accounts are often managed by an employer or school.
-      1. You have received a Gemini Code Assist license through the [Google Developer Program](https://developers.google.com/program/plans-and-pricing) (including qualified Google Developer Experts)
-      1. You have been assigned a license to a current Gemini Code Assist standard or enterprise subscription.
-      1. You are using the product outside the [supported regions](https://developers.google.com/gemini-code-assist/resources/available-locations) for free individual usage.
-      1. You are a Google account holder under the age of 18
-      - If you fall into one of these categories, you must first configure a Google Cloud Project ID to use, [enable the Gemini for Cloud API](https://cloud.google.com/gemini/docs/discover/set-up-gemini#enable-api) and [configure access permissions](https://cloud.google.com/gemini/docs/discover/set-up-gemini#grant-iam).
+1.  **Qwen OAuth (Recommended):**
+    - Use this option to log in with your qwen.ai account.
+    - During initial startup, Qwen Code will direct you to the qwen.ai authentication page. Once authenticated, your credentials will be cached locally so the web login can be skipped on subsequent runs.
+    - **Requirements:**
+      - Valid qwen.ai account
+      - Internet connection for initial authentication
+    - **Benefits:**
+      - Seamless access to Qwen models
+      - Automatic credential refresh
+      - No manual API key management required
 
-      You can temporarily set the environment variable in your current shell session using the following command:
+    **Getting Started:**
 
-      ```bash
-      export GOOGLE_CLOUD_PROJECT="YOUR_PROJECT_ID"
-      ```
+    ```bash
+    # Start Qwen Code and follow the OAuth flow
+    qwen
+    ```
 
-      - For repeated use, you can add the environment variable to your [.env file](#persisting-environment-variables-with-env-files) or your shell's configuration file (like `~/.bashrc`, `~/.zshrc`, or `~/.profile`). For example, the following command adds the environment variable to a `~/.bashrc` file:
+    The CLI will automatically open your browser and guide you through the authentication process.
 
-      ```bash
-      echo 'export GOOGLE_CLOUD_PROJECT="YOUR_PROJECT_ID"' >> ~/.bashrc
-      source ~/.bashrc
-      ```
+    **For users who authenticate using their qwen.ai account:**
 
-2.  **<a id="gemini-api-key"></a>Gemini API key:**
-    - Obtain your API key from Google AI Studio: [https://aistudio.google.com/app/apikey](https://aistudio.google.com/app/apikey)
-    - Set the `GEMINI_API_KEY` environment variable. In the following methods, replace `YOUR_GEMINI_API_KEY` with the API key you obtained from Google AI Studio:
-      - You can temporarily set the environment variable in your current shell session using the following command:
-        ```bash
-        export GEMINI_API_KEY="YOUR_GEMINI_API_KEY"
-        ```
-      - For repeated use, you can add the environment variable to your [.env file](#persisting-environment-variables-with-env-files).
+    **Quota:**
+    - 60 requests per minute
+    - 2,000 requests per day
+    - Token usage is not applicable
 
-      - Alternatively you can export the API key from your shell's configuration file (like `~/.bashrc`, `~/.zshrc`, or `~/.profile`). For example, the following command adds the environment variable to a `~/.bashrc` file:
+    **Cost:** Free
 
-        ```bash
-        echo 'export GEMINI_API_KEY="YOUR_GEMINI_API_KEY"' >> ~/.bashrc
-        source ~/.bashrc
-        ```
+    **Notes:** A specific quota for different models is not specified; model fallback may occur to preserve shared experience quality.
 
-        :warning: Be advised that when you export your API key inside your shell configuration file, any other process executed from the shell can read it.
+2.  **<a id="openai-api"></a>OpenAI-Compatible API:**
+    - Use API keys for OpenAI or other compatible providers.
+    - This method allows you to use various AI models through API keys.
 
-3.  **Vertex AI:**
-    - Obtain your Google Cloud API key: [Get an API Key](https://cloud.google.com/vertex-ai/generative-ai/docs/start/api-keys?usertype=newuser)
-      - Set the `GOOGLE_API_KEY` environment variable. In the following methods, replace `YOUR_GOOGLE_API_KEY` with your Vertex AI API key:
-        - You can temporarily set these environment variables in your current shell session using the following commands:
-          ```bash
-          export GOOGLE_API_KEY="YOUR_GOOGLE_API_KEY"
-          ```
-        - For repeated use, you can add the environment variables to your [.env file](#persisting-environment-variables-with-env-files) or your shell's configuration file (like `~/.bashrc`, `~/.zshrc`, or `~/.profile`). For example, the following commands add the environment variables to a `~/.bashrc` file:
-          ```bash
-          echo 'export GOOGLE_API_KEY="YOUR_GOOGLE_API_KEY"' >> ~/.bashrc
-          source ~/.bashrc
-          ```
-    - To use Application Default Credentials (ADC), use the following command:
-      - Ensure you have a Google Cloud project and have enabled the Vertex AI API.
-        ```bash
-        gcloud auth application-default login
-        ```
-        For more information, see [Set up Application Default Credentials for Google Cloud](https://cloud.google.com/docs/authentication/provide-credentials-adc).
-      - Set the `GOOGLE_CLOUD_PROJECT` and `GOOGLE_CLOUD_LOCATION` environment variables. In the following methods, replace `YOUR_PROJECT_ID` and `YOUR_PROJECT_LOCATION` with the relevant values for your project:
-        - You can temporarily set these environment variables in your current shell session using the following commands:
-          ```bash
-          export GOOGLE_CLOUD_PROJECT="YOUR_PROJECT_ID"
-          export GOOGLE_CLOUD_LOCATION="YOUR_PROJECT_LOCATION" # e.g., us-central1
-          ```
-        - For repeated use, you can add the environment variables to your [.env file](#persisting-environment-variables-with-env-files)
+    **Configuration Methods:**
 
-        - Alternatively you can export the environment variables from your shell's configuration file (like `~/.bashrc`, `~/.zshrc`, or `~/.profile`). For example, the following commands add the environment variables to a `~/.bashrc` file:
+    a) **Environment Variables:**
 
-          ```bash
-          echo 'export GOOGLE_CLOUD_PROJECT="YOUR_PROJECT_ID"' >> ~/.bashrc
-          echo 'export GOOGLE_CLOUD_LOCATION="YOUR_PROJECT_LOCATION"' >> ~/.bashrc
-          source ~/.bashrc
-          ```
+    ```bash
+    export OPENAI_API_KEY="your_api_key_here"
+    export OPENAI_BASE_URL="your_api_endpoint"  # Optional
+    export OPENAI_MODEL="your_model_choice"     # Optional
+    ```
 
-          :warning: Be advised that when you export your API key inside your shell configuration file, any other process executed from the shell can read it.
+    b) **Project `.env` File:**
+    Create a `.env` file in your project root:
 
-4.  **Cloud Shell:**
-    - This option is only available when running in a Google Cloud Shell environment.
-    - It automatically uses the credentials of the logged-in user in the Cloud Shell environment.
-    - This is the default authentication method when running in Cloud Shell and no other method is configured.
+    ```env
+    OPENAI_API_KEY=your_api_key_here
+    OPENAI_BASE_URL=your_api_endpoint
+    OPENAI_MODEL=your_model_choice
+    ```
 
-          :warning: Be advised that when you export your API key inside your shell configuration file, any other process executed from the shell can read it.
+    **Supported Providers:**
+    - OpenAI (https://platform.openai.com/api-keys)
+    - Alibaba Cloud Bailian
+    - ModelScope
+    - OpenRouter
+    - Azure OpenAI
+    - Any OpenAI-compatible API
+
+## Switching Authentication Methods
+
+To switch between authentication methods during a session, use the `/auth` command in the CLI interface:
+
+```bash
+# Within the CLI, type:
+/auth
+```
+
+This will allow you to reconfigure your authentication method without restarting the application.
 
 ### Persisting Environment Variables with `.env` Files
 
-You can create a **`.gemini/.env`** file in your project directory or in your home directory. Creating a plain **`.env`** file also works, but `.gemini/.env` is recommended to keep Gemini variables isolated from other tools.
+You can create a **`.qwen/.env`** file in your project directory or in your home directory. Creating a plain **`.env`** file also works, but `.qwen/.env` is recommended to keep Qwen Code variables isolated from other tools.
 
-Gemini CLI automatically loads environment variables from the **first** `.env` file it finds, using the following search order:
+**Important:** Some environment variables (like `DEBUG` and `DEBUG_MODE`) are automatically excluded from project `.env` files to prevent interference with qwen-code behavior. Use `.qwen/.env` files for qwen-code specific variables.
+
+Qwen Code automatically loads environment variables from the **first** `.env` file it finds, using the following search order:
 
 1. Starting in the **current directory** and moving upward toward `/`, for each directory it checks:
-   1. `.gemini/.env`
+   1. `.qwen/.env`
    2. `.env`
 2. If no file is found, it falls back to your **home directory**:
-   - `~/.gemini/.env`
+   - `~/.qwen/.env`
    - `~/.env`
 
 > **Important:** The search stops at the **first** file encountered—variables are **not merged** across multiple files.
@@ -108,37 +97,47 @@ Gemini CLI automatically loads environment variables from the **first** `.env` f
 **Project-specific overrides** (take precedence when you are inside the project):
 
 ```bash
-mkdir -p .gemini
-echo 'GOOGLE_CLOUD_PROJECT="your-project-id"' >> .gemini/.env
+mkdir -p .qwen
+cat >> .qwen/.env <<'EOF'
+OPENAI_API_KEY="your-api-key"
+OPENAI_BASE_URL="https://api-inference.modelscope.cn/v1"
+OPENAI_MODEL="Qwen/Qwen3-Coder-480B-A35B-Instruct"
+EOF
 ```
 
 **User-wide settings** (available in every directory):
 
 ```bash
-mkdir -p ~/.gemini
-cat >> ~/.gemini/.env <<'EOF'
-GOOGLE_CLOUD_PROJECT="your-project-id"
-GEMINI_API_KEY="your-gemini-api-key"
+mkdir -p ~/.qwen
+cat >> ~/.qwen/.env <<'EOF'
+OPENAI_API_KEY="your-api-key"
+OPENAI_BASE_URL="https://dashscope.aliyuncs.com/compatible-mode/v1"
+OPENAI_MODEL="qwen3-coder-plus"
 EOF
 ```
 
 ## Non-Interactive Mode / Headless Environments
 
-When running the Gemini CLI in a non-interactive environment, you cannot use the interactive login flow.
+When running Qwen Code in a non-interactive environment, you cannot use the OAuth login flow.
 Instead, you must configure authentication using environment variables.
 
-The CLI will automatically detect if it is running in a non-interactive terminal and will use one of the
-following authentication methods if available:
+The CLI will automatically detect if it is running in a non-interactive terminal and will use the
+OpenAI-compatible API method if configured:
 
-1.  **Gemini API Key:**
-    - Set the `GEMINI_API_KEY` environment variable.
-    - The CLI will use this key to authenticate with the Gemini API.
+1.  **OpenAI-Compatible API:**
+    - Set the `OPENAI_API_KEY` environment variable.
+    - Optionally set `OPENAI_BASE_URL` and `OPENAI_MODEL` for custom endpoints.
+    - The CLI will use these credentials to authenticate with the API provider.
 
-2.  **Vertex AI:**
-    - Set the `GOOGLE_GENAI_USE_VERTEXAI=true` environment variable.
-    - **Using an API Key:** Set the `GOOGLE_API_KEY` environment variable.
-    - **Using Application Default Credentials (ADC):**
-      - Run `gcloud auth application-default login` in your environment to configure ADC.
-      - Ensure the `GOOGLE_CLOUD_PROJECT` and `GOOGLE_CLOUD_LOCATION` environment variables are set.
+**Example for headless environments:**
 
-If none of these environment variables are set in a non-interactive session, the CLI will exit with an error.
+```bash
+export OPENAI_API_KEY="your-api-key"
+export OPENAI_BASE_URL="https://api-inference.modelscope.cn/v1"
+export OPENAI_MODEL="Qwen/Qwen3-Coder-480B-A35B-Instruct"
+
+# Run Qwen Code
+qwen
+```
+
+If no API key is set in a non-interactive session, the CLI will exit with an error prompting you to configure authentication.

docs/cli/commands.md

@@ -17,11 +17,19 @@ Slash commands provide meta-level control over the CLI itself.
     - **`save`**
       - **Description:** Saves the current conversation history. You must add a `<tag>` for identifying the conversation state.
       - **Usage:** `/chat save <tag>`
+      - **Details on Checkpoint Location:** The default locations for saved chat checkpoints are:
+        - Linux/macOS: `~/.config/google-generative-ai/checkpoints/`
+        - Windows: `C:\Users\<YourUsername>\AppData\Roaming\google-generative-ai\checkpoints\`
+        - When you run `/chat list`, the CLI only scans these specific directories to find available checkpoints.
+        - **Note:** These checkpoints are for manually saving and resuming conversation states. For automatic checkpoints created before file modifications, see the [Checkpointing documentation](../checkpointing.md).
     - **`resume`**
       - **Description:** Resumes a conversation from a previous save.
       - **Usage:** `/chat resume <tag>`
     - **`list`**
       - **Description:** Lists available tags for chat state resumption.
+    - **`delete`**
+      - **Description:** Deletes a saved conversation checkpoint.
+      - **Usage:** `/chat delete <tag>`
 
 - **`/clear`**
   - **Description:** Clear the terminal screen, including the visible session history and scrollback within the CLI. The underlying session data (for history recall) might be preserved depending on the exact implementation, but the visual display is cleared.
@@ -33,6 +41,28 @@ Slash commands provide meta-level control over the CLI itself.
 - **`/copy`**
   - **Description:** Copies the last output produced by Qwen Code to your clipboard, for easy sharing or reuse.
 
+- **`/directory`** (or **`/dir`**)
+  - **Description:** Manage workspace directories for multi-directory support.
+  - **Sub-commands:**
+    - **`add`**:
+      - **Description:** Add a directory to the workspace. The path can be absolute or relative to the current working directory. Moreover, the reference from home directory is supported as well.
+      - **Usage:** `/directory add <path1>,<path2>`
+      - **Note:** Disabled in restrictive sandbox profiles. If you're using that, use `--include-directories` when starting the session instead.
+    - **`show`**:
+      - **Description:** Display all directories added by `/directory add` and `--include-directories`.
+      - **Usage:** `/directory show`
+
+- **`/directory`** (or **`/dir`**)
+  - **Description:** Manage workspace directories for multi-directory support.
+  - **Sub-commands:**
+    - **`add`**:
+      - **Description:** Add a directory to the workspace. The path can be absolute or relative to the current working directory. Moreover, the reference from home directory is supported as well.
+      - **Usage:** `/directory add <path1>,<path2>`
+      - **Note:** Disabled in restrictive sandbox profiles. If you're using that, use `--include-directories` when starting the session instead.
+    - **`show`**:
+      - **Description:** Display all directories added by `/directory add` and `--include-directories`.
+      - **Usage:** `/directory show`
+
 - **`/editor`**
   - **Description:** Open a dialog for selecting supported editors.
 
@@ -54,15 +84,15 @@ Slash commands provide meta-level control over the CLI itself.
   - **Keyboard Shortcut:** Press **Ctrl+T** at any time to toggle between showing and hiding tool descriptions.
 
 - **`/memory`**
-  - **Description:** Manage the AI's instructional context (hierarchical memory loaded from `GEMINI.md` files).
+  - **Description:** Manage the AI's instructional context (hierarchical memory loaded from `QWEN.md` files by default; configurable via `contextFileName`).
   - **Sub-commands:**
     - **`add`**:
       - **Description:** Adds the following text to the AI's memory. Usage: `/memory add <text to remember>`
     - **`show`**:
-      - **Description:** Display the full, concatenated content of the current hierarchical memory that has been loaded from all `GEMINI.md` files. This lets you inspect the instructional context being provided to the Gemini model.
+      - **Description:** Display the full, concatenated content of the current hierarchical memory that has been loaded from all context files (e.g., `QWEN.md`). This lets you inspect the instructional context being provided to the model.
     - **`refresh`**:
-      - **Description:** Reload the hierarchical instructional memory from all `GEMINI.md` files found in the configured locations (global, project/ancestors, and sub-directories). This command updates the model with the latest `GEMINI.md` content.
-    - **Note:** For more details on how `GEMINI.md` files contribute to hierarchical memory, see the [CLI Configuration documentation](./configuration.md#4-geminimd-files-hierarchical-instructional-context).
+      - **Description:** Reload the hierarchical instructional memory from all context files (default: `QWEN.md`) found in the configured locations (global, project/ancestors, and sub-directories). This updates the model with the latest context content.
+    - **Note:** For more details on how context files contribute to hierarchical memory, see the [CLI Configuration documentation](./configuration.md#context-files-hierarchical-instructional-context).
 
 - **`/restore`**
   - **Description:** Restores the project files to the state they were in just before a tool was executed. This is particularly useful for undoing file edits made by a tool. If run without a tool call ID, it will list available checkpoints to restore from.
@@ -106,6 +136,9 @@ Slash commands provide meta-level control over the CLI itself.
     - **Persistent setting:** Vim mode preference is saved to `~/.gemini/settings.json` and restored between sessions
   - **Status indicator:** When enabled, shows `[NORMAL]` or `[INSERT]` in the footer
 
+- **`/init`**
+  - **Description:** Analyzes the current directory and creates a `QWEN.md` context file by default (or the filename specified by `contextFileName`). If a non-empty file already exists, no changes are made. The command seeds an empty file and prompts the model to populate it with project-specific instructions.
+
 ### Custom Commands
 
 For a quick start, see the [example](#example-a-pure-function-refactoring-command) below.
@@ -234,7 +267,7 @@ Please generate a Conventional Commit message based on the following git diff:
 
 ```diff
 !{git diff --staged}
-````
+```
 
 """
 
@@ -255,7 +288,7 @@ First, ensure the user commands directory exists, then create a `refactor` subdi
 ```bash
 mkdir -p ~/.gemini/commands/refactor
 touch ~/.gemini/commands/refactor/pure.toml
-````
+```
 
 **2. Add the content to the file:**
 

docs/cli/configuration.md

@@ -38,8 +38,8 @@ In addition to a project settings file, a project's `.gemini` directory can cont
 ### Available settings in `settings.json`:
 
 - **`contextFileName`** (string or array of strings):
-  - **Description:** Specifies the filename for context files (e.g., `GEMINI.md`, `AGENTS.md`). Can be a single filename or a list of accepted filenames.
-  - **Default:** `GEMINI.md`
+  - **Description:** Specifies the filename for context files (e.g., `QWEN.md`, `AGENTS.md`). Can be a single filename or a list of accepted filenames.
+  - **Default:** `QWEN.md`
   - **Example:** `"contextFileName": "AGENTS.md"`
 
 - **`bugCommand`** (object):
@@ -240,6 +240,39 @@ In addition to a project settings file, a project's `.gemini` directory can cont
     }
     ```
 
+- **`excludedProjectEnvVars`** (array of strings):
+  - **Description:** Specifies environment variables that should be excluded from being loaded from project `.env` files. This prevents project-specific environment variables (like `DEBUG=true`) from interfering with gemini-cli behavior. Variables from `.gemini/.env` files are never excluded.
+  - **Default:** `["DEBUG", "DEBUG_MODE"]`
+  - **Example:**
+    ```json
+    "excludedProjectEnvVars": ["DEBUG", "DEBUG_MODE", "NODE_ENV"]
+    ```
+
+- **`includeDirectories`** (array of strings):
+  - **Description:** Specifies an array of additional absolute or relative paths to include in the workspace context. This allows you to work with files across multiple directories as if they were one. Paths can use `~` to refer to the user's home directory. This setting can be combined with the `--include-directories` command-line flag.
+  - **Default:** `[]`
+  - **Example:**
+    ```json
+    "includeDirectories": [
+      "/path/to/another/project",
+      "../shared-library",
+      "~/common-utils"
+    ]
+    ```
+
+- **`loadMemoryFromIncludeDirectories`** (boolean):
+  - **Description:** Controls the behavior of the `/memory refresh` command. If set to `true`, `QWEN.md` files should be loaded from all directories that are added. If set to `false`, `QWEN.md` should only be loaded from the current directory.
+  - **Default:** `false`
+  - **Example:**
+    ```json
+    "loadMemoryFromIncludeDirectories": true
+    ```
+
+- **`tavilyApiKey`** (string):
+  - **Description:** API key for Tavily web search service. Required to enable the `web_search` tool functionality. If not configured, the web search tool will be disabled and skipped.
+  - **Default:** `undefined` (web search disabled)
+  - **Example:** `"tavilyApiKey": "tvly-your-api-key-here"`
+
 ### Example `settings.json`:
 
 ```json
@@ -248,6 +281,7 @@ In addition to a project settings file, a project's `.gemini` directory can cont
   "sandbox": "docker",
   "toolDiscoveryCommand": "bin/get_tools",
   "toolCallCommand": "bin/call_tool",
+  "tavilyApiKey": "$TAVILY_API_KEY",
   "mcpServers": {
     "mainServer": {
       "command": "bin/mcp_server.py"
@@ -271,7 +305,10 @@ In addition to a project settings file, a project's `.gemini` directory can cont
     "run_shell_command": {
       "tokenBudget": 100
     }
-  }
+  },
+  "excludedProjectEnvVars": ["DEBUG", "DEBUG_MODE", "NODE_ENV"],
+  "includeDirectories": ["path/to/dir1", "~/path/to/dir2", "../path/to/dir3"],
+  "loadMemoryFromIncludeDirectories": true
 }
 ```
 
@@ -293,6 +330,8 @@ The CLI automatically loads environment variables from an `.env` file. The loadi
 2.  If not found, it searches upwards in parent directories until it finds an `.env` file or reaches the project root (identified by a `.git` folder) or the home directory.
 3.  If still not found, it looks for `~/.env` (in the user's home directory).
 
+**Environment Variable Exclusion:** Some environment variables (like `DEBUG` and `DEBUG_MODE`) are automatically excluded from being loaded from project `.env` files to prevent interference with gemini-cli behavior. Variables from `.gemini/.env` files are never excluded. You can customize this behavior using the `excludedProjectEnvVars` setting in your `settings.json` file.
+
 - **`GEMINI_API_KEY`** (Required):
   - Your API key for the Gemini API.
   - **Crucial for operation.** The CLI will not function without it.
@@ -332,6 +371,7 @@ The CLI automatically loads environment variables from an `.env` file. The loadi
   - `<profile_name>`: Uses a custom profile. To define a custom profile, create a file named `sandbox-macos-<profile_name>.sb` in your project's `.qwen/` directory (e.g., `my-project/.qwen/sandbox-macos-custom.sb`).
 - **`DEBUG` or `DEBUG_MODE`** (often used by underlying libraries or the CLI itself):
   - Set to `true` or `1` to enable verbose debug logging, which can be helpful for troubleshooting.
+  - **Note:** These variables are automatically excluded from project `.env` files by default to prevent interference with gemini-cli behavior. Use `.gemini/.env` files if you need to set these for gemini-cli specifically.
 - **`NO_COLOR`**:
   - Set to any value to disable all color output in the CLI.
 - **`CLI_TITLE`**:
@@ -339,6 +379,11 @@ The CLI automatically loads environment variables from an `.env` file. The loadi
 - **`CODE_ASSIST_ENDPOINT`**:
   - Specifies the endpoint for the code assist server.
   - This is useful for development and testing.
+- **`TAVILY_API_KEY`**:
+  - Your API key for the Tavily web search service.
+  - Required to enable the `web_search` tool functionality.
+  - If not configured, the web search tool will be disabled and skipped.
+  - Example: `export TAVILY_API_KEY="tvly-your-api-key-here"`
 
 ## Command-Line Arguments
 
@@ -387,10 +432,18 @@ Arguments passed directly when running the CLI can override other configurations
 - **`--proxy`**:
   - Sets the proxy for the CLI.
   - Example: `--proxy http://localhost:7890`.
+- **`--include-directories <dir1,dir2,...>`**:
+  - Includes additional directories in the workspace for multi-directory support.
+  - Can be specified multiple times or as comma-separated values.
+  - 5 directories can be added at maximum.
+  - Example: `--include-directories /path/to/project1,/path/to/project2` or `--include-directories /path/to/project1 --include-directories /path/to/project2`
 - **`--version`**:
   - Displays the version of the CLI.
 - **`--openai-logging`**:
   - Enables logging of OpenAI API calls for debugging and analysis. This flag overrides the `enableOpenAILogging` setting in `settings.json`.
+- **`--tavily-api-key <api_key>`**:
+  - Sets the Tavily API key for web search functionality for this session.
+  - Example: `gemini --tavily-api-key tvly-your-api-key-here`
 
 ## Context Files (Hierarchical Instructional Context)
 
@@ -398,7 +451,7 @@ While not strictly configuration for the CLI's _behavior_, context files (defaul
 
 - **Purpose:** These Markdown files contain instructions, guidelines, or context that you want the Gemini model to be aware of during your interactions. The system is designed to manage this instructional context hierarchically.
 
-### Example Context File Content (e.g., `GEMINI.md`)
+### Example Context File Content (e.g., `QWEN.md`)
 
 Here's a conceptual example of what a context file at the root of a TypeScript project might contain:
 
@@ -433,9 +486,9 @@ Here's a conceptual example of what a context file at the root of a TypeScript p
 
 This example demonstrates how you can provide general project context, specific coding conventions, and even notes about particular files or components. The more relevant and precise your context files are, the better the AI can assist you. Project-specific context files are highly encouraged to establish conventions and context.
 
-- **Hierarchical Loading and Precedence:** The CLI implements a sophisticated hierarchical memory system by loading context files (e.g., `GEMINI.md`) from several locations. Content from files lower in this list (more specific) typically overrides or supplements content from files higher up (more general). The exact concatenation order and final context can be inspected using the `/memory show` command. The typical loading order is:
+- **Hierarchical Loading and Precedence:** The CLI implements a sophisticated hierarchical memory system by loading context files (e.g., `QWEN.md`) from several locations. Content from files lower in this list (more specific) typically overrides or supplements content from files higher up (more general). The exact concatenation order and final context can be inspected using the `/memory show` command. The typical loading order is:
   1.  **Global Context File:**
-      - Location: `~/.gemini/<contextFileName>` (e.g., `~/.gemini/GEMINI.md` in your user home directory).
+      - Location: `~/.qwen/<contextFileName>` (e.g., `~/.qwen/QWEN.md` in your user home directory).
       - Scope: Provides default instructions for all your projects.
   2.  **Project Root & Ancestors Context Files:**
       - Location: The CLI searches for the configured context file in the current working directory and then in each parent directory up to either the project root (identified by a `.git` folder) or your home directory.
@@ -444,6 +497,7 @@ This example demonstrates how you can provide general project context, specific
       - Location: The CLI also scans for the configured context file in subdirectories _below_ the current working directory (respecting common ignore patterns like `node_modules`, `.git`, etc.). The breadth of this search is limited to 200 directories by default, but can be configured with a `memoryDiscoveryMaxDirs` field in your `settings.json` file.
       - Scope: Allows for highly specific instructions relevant to a particular component, module, or subsection of your project.
 - **Concatenation & UI Indication:** The contents of all found context files are concatenated (with separators indicating their origin and path) and provided as part of the system prompt to the Gemini model. The CLI footer displays the count of loaded context files, giving you a quick visual cue about the active instructional context.
+- **Importing Content:** You can modularize your context files by importing other Markdown files using the `@path/to/file.md` syntax. For more details, see the [Memory Import Processor documentation](../core/memport.md).
 - **Commands for Memory Management:**
   - Use `/memory refresh` to force a re-scan and reload of all context files from all configured locations. This updates the AI's instructional context.
   - Use `/memory show` to display the combined instructional context currently loaded, allowing you to verify the hierarchy and content being used by the AI.
@@ -505,3 +559,5 @@ You can opt out of usage statistics collection at any time by setting the `usage
   "usageStatisticsEnabled": false
 }
 ```
+
+Note: When usage statistics are enabled, events are sent to an Alibaba Cloud RUM collection endpoint.

docs/cli/index.md

@@ -1,28 +1,28 @@
-# Gemini CLI
+# Qwen Code CLI
 
-Within Gemini CLI, `packages/cli` is the frontend for users to send and receive prompts with the Gemini AI model and its associated tools. For a general overview of Gemini CLI, see the [main documentation page](../index.md).
+Within Qwen Code, `packages/cli` is the frontend for users to send and receive prompts with Qwen and other AI models and their associated tools. For a general overview of Qwen Code, see the [main documentation page](../index.md).
 
 ## Navigating this section
 
-- **[Authentication](./authentication.md):** A guide to setting up authentication with Google's AI services.
-- **[Commands](./commands.md):** A reference for Gemini CLI commands (e.g., `/help`, `/tools`, `/theme`).
-- **[Configuration](./configuration.md):** A guide to tailoring Gemini CLI behavior using configuration files.
+- **[Authentication](./authentication.md):** A guide to setting up authentication with Qwen OAuth and OpenAI-compatible providers.
+- **[Commands](./commands.md):** A reference for Qwen Code CLI commands (e.g., `/help`, `/tools`, `/theme`).
+- **[Configuration](./configuration.md):** A guide to tailoring Qwen Code CLI behavior using configuration files.
 - **[Token Caching](./token-caching.md):** Optimize API costs through token caching.
 - **[Themes](./themes.md)**: A guide to customizing the CLI's appearance with different themes.
-- **[Tutorials](tutorials.md)**: A tutorial showing how to use Gemini CLI to automate a development task.
+- **[Tutorials](tutorials.md)**: A tutorial showing how to use Qwen Code to automate a development task.
 
 ## Non-interactive mode
 
-Gemini CLI can be run in a non-interactive mode, which is useful for scripting and automation. In this mode, you pipe input to the CLI, it executes the command, and then it exits.
+Qwen Code can be run in a non-interactive mode, which is useful for scripting and automation. In this mode, you pipe input to the CLI, it executes the command, and then it exits.
 
-The following example pipes a command to Gemini CLI from your terminal:
+The following example pipes a command to Qwen Code from your terminal:
 
 ```bash
-echo "What is fine tuning?" | gemini
+echo "What is fine tuning?" | qwen
 ```
 
-Gemini CLI executes the command and prints the output to your terminal. Note that you can achieve the same behavior by using the `--prompt` or `-p` flag. For example:
+Qwen Code executes the command and prints the output to your terminal. Note that you can achieve the same behavior by using the `--prompt` or `-p` flag. For example:
 
 ```bash
-gemini -p "What is fine tuning?"
+qwen -p "What is fine tuning?"
 ```

docs/cli/themes.md

@@ -58,7 +58,11 @@ Add a `customThemes` block to your user, project, or system `settings.json` file
       "AccentYellow": "#E5C07B",
       "AccentRed": "#E06C75",
       "Comment": "#5C6370",
-      "Gray": "#ABB2BF"
+      "Gray": "#ABB2BF",
+      "DiffAdded": "#A6E3A1",
+      "DiffRemoved": "#F38BA8",
+      "DiffModified": "#89B4FA",
+      "GradientColors": ["#4796E4", "#847ACE", "#C3677F"]
     }
   }
 }
@@ -77,6 +81,9 @@ Add a `customThemes` block to your user, project, or system `settings.json` file
 - `AccentRed`
 - `Comment`
 - `Gray`
+- `DiffAdded` (optional, for added lines in diffs)
+- `DiffRemoved` (optional, for removed lines in diffs)
+- `DiffModified` (optional, for modified lines in diffs)
 
 **Required Properties:**
 

docs/core/index.md

@@ -5,14 +5,14 @@ Gemini CLI's core package (`packages/core`) is the backend portion of Gemini CLI
 ## Navigating this section
 
 - **[Core tools API](./tools-api.md):** Information on how tools are defined, registered, and used by the core.
-- **[Memory Import Processor](./memport.md):** Documentation for the modular GEMINI.md import feature using @file.md syntax.
+- **[Memory Import Processor](./memport.md):** Documentation for the modular QWEN.md import feature using @file.md syntax.
 
 ## Role of the core
 
 While the `packages/cli` portion of Gemini CLI provides the user interface, `packages/core` is responsible for:
 
 - **Gemini API interaction:** Securely communicating with the Google Gemini API, sending user prompts, and receiving model responses.
-- **Prompt engineering:** Constructing effective prompts for the Gemini model, potentially incorporating conversation history, tool definitions, and instructional context from `GEMINI.md` files.
+- **Prompt engineering:** Constructing effective prompts for the model, potentially incorporating conversation history, tool definitions, and instructional context from context files (e.g., `QWEN.md`).
 - **Tool management & orchestration:**
   - Registering available tools (e.g., file system tools, shell command execution).
   - Interpreting tool use requests from the Gemini model.
@@ -48,8 +48,8 @@ The file discovery service is responsible for finding files in the project that
 
 ## Memory discovery service
 
-The memory discovery service is responsible for finding and loading the `GEMINI.md` files that provide context to the model. It searches for these files in a hierarchical manner, starting from the current working directory and moving up to the project root and the user's home directory. It also searches in subdirectories.
+The memory discovery service is responsible for finding and loading the context files (default: `QWEN.md`) that provide context to the model. It searches for these files in a hierarchical manner, starting from the current working directory and moving up to the project root and the user's home directory. It also searches in subdirectories.
 
 This allows you to have global, project-level, and component-level context files, which are all combined to provide the model with the most relevant information.
 
-You can use the [`/memory` command](../cli/commands.md) to `show`, `add`, and `refresh` the content of loaded `GEMINI.md` files.
+You can use the [`/memory` command](../cli/commands.md) to `show`, `add`, and `refresh` the content of loaded context files.

docs/core/memport.md

@@ -1,21 +1,17 @@
 # Memory Import Processor
 
-The Memory Import Processor is a feature that allows you to modularize your GEMINI.md files by importing content from other markdown files using the `@file.md` syntax.
+The Memory Import Processor is a feature that allows you to modularize your context files (e.g., `QWEN.md`) by importing content from other files using the `@file.md` syntax.
 
 ## Overview
 
-This feature enables you to break down large GEMINI.md files into smaller, more manageable components that can be reused across different contexts. The import processor supports both relative and absolute paths, with built-in safety features to prevent circular imports and ensure file access security.
-
-## Important Limitations
-
-**This feature only supports `.md` (markdown) files.** Attempting to import files with other extensions (like `.txt`, `.json`, etc.) will result in a warning and the import will fail.
+This feature enables you to break down large context files (e.g., `QWEN.md`) into smaller, more manageable components that can be reused across different contexts. The import processor supports both relative and absolute paths, with built-in safety features to prevent circular imports and ensure file access security.
 
 ## Syntax
 
-Use the `@` symbol followed by the path to the markdown file you want to import:
+Use the `@` symbol followed by the path to the file you want to import:
 
 ```markdown
-# Main GEMINI.md file
+# Main QWEN.md file
 
 This is the main content.
 
@@ -43,7 +39,7 @@ More content here.
 ### Basic Import
 
 ```markdown
-# My GEMINI.md
+# My QWEN.md
 
 Welcome to my project!
 
@@ -96,24 +92,10 @@ The `validateImportPath` function ensures that imports are only allowed from spe
 
 ### Maximum Import Depth
 
-To prevent infinite recursion, there's a configurable maximum import depth (default: 10 levels).
+To prevent infinite recursion, there's a configurable maximum import depth (default: 5 levels).
 
 ## Error Handling
 
-### Non-MD File Attempts
-
-If you try to import a non-markdown file, you'll see a warning:
-
-```markdown
-@./instructions.txt <!-- This will show a warning and fail -->
-```
-
-Console output:
-
-```
-[WARN] [ImportProcessor] Import processor only supports .md files. Attempting to import non-md file: ./instructions.txt. This will fail.
-```
-
 ### Missing Files
 
 If a referenced file doesn't exist, the import will fail gracefully with an error comment in the output.
@@ -122,11 +104,41 @@ If a referenced file doesn't exist, the import will fail gracefully with an erro
 
 Permission issues or other file system errors are handled gracefully with appropriate error messages.
 
+## Code Region Detection
+
+The import processor uses the `marked` library to detect code blocks and inline code spans, ensuring that `@` imports inside these regions are properly ignored. This provides robust handling of nested code blocks and complex Markdown structures.
+
+## Import Tree Structure
+
+The processor returns an import tree that shows the hierarchy of imported files. This helps users debug problems with their context files by showing which files were read and their import relationships.
+
+Example tree structure:
+
+```
+ Memory Files
+ L project: QWEN.md
+            L a.md
+              L b.md
+                L c.md
+              L d.md
+                L e.md
+                  L f.md
+            L included.md
+```
+
+The tree preserves the order that files were imported and shows the complete import chain for debugging purposes.
+
+## Comparison to Claude Code's `/memory` (`claude.md`) Approach
+
+Claude Code's `/memory` feature (as seen in `claude.md`) produces a flat, linear document by concatenating all included files, always marking file boundaries with clear comments and path names. It does not explicitly present the import hierarchy, but the LLM receives all file contents and paths, which is sufficient for reconstructing the hierarchy if needed.
+
+Note: The import tree is mainly for clarity during development and has limited relevance to LLM consumption.
+
 ## API Reference
 
 ### `processImports(content, basePath, debugMode?, importState?)`
 
-Processes import statements in GEMINI.md content.
+Processes import statements in context file content.
 
 **Parameters:**
 
@@ -135,7 +147,25 @@ Processes import statements in GEMINI.md content.
 - `debugMode` (boolean, optional): Whether to enable debug logging (default: false)
 - `importState` (ImportState, optional): State tracking for circular import prevention
 
-**Returns:** Promise<string> - Processed content with imports resolved
+**Returns:** Promise<ProcessImportsResult> - Object containing processed content and import tree
+
+### `ProcessImportsResult`
+
+```typescript
+interface ProcessImportsResult {
+  content: string; // The processed content with imports resolved
+  importTree: MemoryFile; // Tree structure showing the import hierarchy
+}
+```
+
+### `MemoryFile`
+
+```typescript
+interface MemoryFile {
+  path: string; // The file path
+  imports?: MemoryFile[]; // Direct imports, in the order they were imported
+}
+```
 
 ### `validateImportPath(importPath, basePath, allowedDirectories)`
 
@@ -149,6 +179,16 @@ Validates import paths to ensure they are safe and within allowed directories.
 
 **Returns:** boolean - Whether the import path is valid
 
+### `findProjectRoot(startDir)`
+
+Finds the project root by searching for a `.git` directory upwards from the given start directory. Implemented as an **async** function using non-blocking file system APIs to avoid blocking the Node.js event loop.
+
+**Parameters:**
+
+- `startDir` (string): The directory to start searching from
+
+**Returns:** Promise<string> - The project root directory (or the start directory if no `.git` is found)
+
 ## Best Practices
 
 1. **Use descriptive file names** for imported components
@@ -161,7 +201,7 @@ Validates import paths to ensure they are safe and within allowed directories.
 
 ### Common Issues
 
-1. **Import not working**: Check that the file exists and has a `.md` extension
+1. **Import not working**: Check that the file exists and the path is correct
 2. **Circular import warnings**: Review your import structure for circular references
 3. **Permission errors**: Ensure the files are readable and within allowed directories
 4. **Path resolution issues**: Use absolute paths if relative paths aren't resolving correctly

docs/core/tools-api.md

@@ -15,9 +15,11 @@ The Gemini CLI core (`packages/core`) features a robust system for defining, reg
   - `execute()`: The core method that performs the tool's action and returns a `ToolResult`.
 
 - **`ToolResult` (`tools.ts`):** An interface defining the structure of a tool's execution outcome:
-  - `llmContent`: The factual string content to be included in the history sent back to the LLM for context.
+  - `llmContent`: The factual content to be included in the history sent back to the LLM for context. This can be a simple string or a `PartListUnion` (an array of `Part` objects and strings) for rich content.
   - `returnDisplay`: A user-friendly string (often Markdown) or a special object (like `FileDiff`) for display in the CLI.
 
+- **Returning Rich Content:** Tools are not limited to returning simple text. The `llmContent` can be a `PartListUnion`, which is an array that can contain a mix of `Part` objects (for images, audio, etc.) and `string`s. This allows a single tool execution to return multiple pieces of rich content.
+
 - **Tool Registry (`tool-registry.ts`):** A class (`ToolRegistry`) responsible for:
   - **Registering Tools:** Holding a collection of all available built-in tools (e.g., `ReadFileTool`, `ShellTool`).
   - **Discovering Tools:** It can also discover tools dynamically:

docs/extension.md

@@ -28,15 +28,49 @@ The `gemini-extension.json` file contains the configuration for the extension. T
       "command": "node my-server.js"
     }
   },
-  "contextFileName": "GEMINI.md",
+  "contextFileName": "QWEN.md",
   "excludeTools": ["run_shell_command"]
 }
 ```
 
-- `name`: The name of the extension. This is used to uniquely identify the extension. This should match the name of your extension directory.
+- `name`: The name of the extension. This is used to uniquely identify the extension and for conflict resolution when extension commands have the same name as user or project commands.
 - `version`: The version of the extension.
 - `mcpServers`: A map of MCP servers to configure. The key is the name of the server, and the value is the server configuration. These servers will be loaded on startup just like MCP servers configured in a [`settings.json` file](./cli/configuration.md). If both an extension and a `settings.json` file configure an MCP server with the same name, the server defined in the `settings.json` file takes precedence.
-- `contextFileName`: The name of the file that contains the context for the extension. This will be used to load the context from the workspace. If this property is not used but a `GEMINI.md` file is present in your extension directory, then that file will be loaded.
+- `contextFileName`: The name of the file that contains the context for the extension. This will be used to load the context from the workspace. If this property is not used but a `QWEN.md` file is present in your extension directory, then that file will be loaded.
 - `excludeTools`: An array of tool names to exclude from the model. You can also specify command-specific restrictions for tools that support it, like the `run_shell_command` tool. For example, `"excludeTools": ["run_shell_command(rm -rf)"]` will block the `rm -rf` command.
 
 When Gemini CLI starts, it loads all the extensions and merges their configurations. If there are any conflicts, the workspace configuration takes precedence.
+
+## Extension Commands
+
+Extensions can provide [custom commands](./cli/commands.md#custom-commands) by placing TOML files in a `commands/` subdirectory within the extension directory. These commands follow the same format as user and project custom commands and use standard naming conventions.
+
+### Example
+
+An extension named `gcp` with the following structure:
+
+```
+.gemini/extensions/gcp/
+├── gemini-extension.json
+└── commands/
+    ├── deploy.toml
+    └── gcs/
+        └── sync.toml
+```
+
+Would provide these commands:
+
+- `/deploy` - Shows as `[gcp] Custom command from deploy.toml` in help
+- `/gcs:sync` - Shows as `[gcp] Custom command from sync.toml` in help
+
+### Conflict Resolution
+
+Extension commands have the lowest precedence. When a conflict occurs with user or project commands:
+
+1. **No conflict**: Extension command uses its natural name (e.g., `/deploy`)
+2. **With conflict**: Extension command is renamed with the extension prefix (e.g., `/gcp.deploy`)
+
+For example, if both a user and the `gcp` extension define a `deploy` command:
+
+- `/deploy` - Executes the user's deploy command
+- `/gcp.deploy` - Executes the extension's deploy command (marked with `[gcp]` tag)

docs/gemini-ignore.md

@@ -0,0 +1,59 @@
+# Ignoring Files
+
+This document provides an overview of the Gemini Ignore (`.geminiignore`) feature of the Gemini CLI.
+
+The Gemini CLI includes the ability to automatically ignore files, similar to `.gitignore` (used by Git) and `.aiexclude` (used by Gemini Code Assist). Adding paths to your `.geminiignore` file will exclude them from tools that support this feature, although they will still be visible to other services (such as Git).
+
+## How it works
+
+When you add a path to your `.geminiignore` file, tools that respect this file will exclude matching files and directories from their operations. For example, when you use the [`read_many_files`](./tools/multi-file.md) command, any paths in your `.geminiignore` file will be automatically excluded.
+
+For the most part, `.geminiignore` follows the conventions of `.gitignore` files:
+
+- Blank lines and lines starting with `#` are ignored.
+- Standard glob patterns are supported (such as `*`, `?`, and `[]`).
+- Putting a `/` at the end will only match directories.
+- Putting a `/` at the beginning anchors the path relative to the `.geminiignore` file.
+- `!` negates a pattern.
+
+You can update your `.geminiignore` file at any time. To apply the changes, you must restart your Gemini CLI session.
+
+## How to use `.geminiignore`
+
+To enable `.geminiignore`:
+
+1. Create a file named `.geminiignore` in the root of your project directory.
+
+To add a file or directory to `.geminiignore`:
+
+1. Open your `.geminiignore` file.
+2. Add the path or file you want to ignore, for example: `/archive/` or `apikeys.txt`.
+
+### `.geminiignore` examples
+
+You can use `.geminiignore` to ignore directories and files:
+
+```
+# Exclude your /packages/ directory and all subdirectories
+/packages/
+
+# Exclude your apikeys.txt file
+apikeys.txt
+```
+
+You can use wildcards in your `.geminiignore` file with `*`:
+
+```
+# Exclude all .md files
+*.md
+```
+
+Finally, you can exclude files and directories from exclusion with `!`:
+
+```
+# Exclude all .md files except README.md
+*.md
+!README.md
+```
+
+To remove paths from your `.geminiignore` file, delete the relevant lines.

docs/index.md

@@ -28,7 +28,7 @@ This documentation is organized into the following sections:
   - **[Multi-File Read Tool](./tools/multi-file.md):** Documentation for the `read_many_files` tool.
   - **[Shell Tool](./tools/shell.md):** Documentation for the `run_shell_command` tool.
   - **[Web Fetch Tool](./tools/web-fetch.md):** Documentation for the `web_fetch` tool.
-  - **[Web Search Tool](./tools/web-search.md):** Documentation for the `google_web_search` tool.
+  - **[Web Search Tool](./tools/web-search.md):** Documentation for the `web_search` tool.
   - **[Memory Tool](./tools/memory.md):** Documentation for the `save_memory` tool.
 - **[Contributing & Development Guide](../CONTRIBUTING.md):** Information for contributors and developers, including setup, building, testing, and coding conventions.
 - **[NPM Workspaces and Publishing](./npm.md):** Details on how the project's packages are managed and published.

docs/issue-and-pr-automation.md

@@ -0,0 +1,84 @@
+# Automation and Triage Processes
+
+This document provides a detailed overview of the automated processes we use to manage and triage issues and pull requests. Our goal is to provide prompt feedback and ensure that contributions are reviewed and integrated efficiently. Understanding this automation will help you as a contributor know what to expect and how to best interact with our repository bots.
+
+## Guiding Principle: Issues and Pull Requests
+
+First and foremost, almost every Pull Request (PR) should be linked to a corresponding Issue. The issue describes the "what" and the "why" (the bug or feature), while the PR is the "how" (the implementation). This separation helps us track work, prioritize features, and maintain clear historical context. Our automation is built around this principle.
+
+---
+
+## Detailed Automation Workflows
+
+Here is a breakdown of the specific automation workflows that run in our repository.
+
+### 1. When you open an Issue: `Automated Issue Triage`
+
+This is the first bot you will interact with when you create an issue. Its job is to perform an initial analysis and apply the correct labels.
+
+- **Workflow File**: `.github/workflows/gemini-automated-issue-triage.yml`
+- **When it runs**: Immediately after an issue is created or reopened.
+- **What it does**:
+  - It uses a Gemini model to analyze the issue's title and body against a detailed set of guidelines.
+  - **Applies one `area/*` label**: Categorizes the issue into a functional area of the project (e.g., `area/ux`, `area/models`, `area/platform`).
+  - **Applies one `kind/*` label**: Identifies the type of issue (e.g., `kind/bug`, `kind/enhancement`, `kind/question`).
+  - **Applies one `priority/*` label**: Assigns a priority from P0 (critical) to P3 (low) based on the described impact.
+  - **May apply `status/need-information`**: If the issue lacks critical details (like logs or reproduction steps), it will be flagged for more information.
+  - **May apply `status/need-retesting`**: If the issue references a CLI version that is more than six versions old, it will be flagged for retesting on a current version.
+- **What you should do**:
+  - Fill out the issue template as completely as possible. The more detail you provide, the more accurate the triage will be.
+  - If the `status/need-information` label is added, please provide the requested details in a comment.
+
+### 2. When you open a Pull Request: `Continuous Integration (CI)`
+
+This workflow ensures that all changes meet our quality standards before they can be merged.
+
+- **Workflow File**: `.github/workflows/ci.yml`
+- **When it runs**: On every push to a pull request.
+- **What it does**:
+  - **Lint**: Checks that your code adheres to our project's formatting and style rules.
+  - **Test**: Runs our full suite of automated tests across macOS, Windows, and Linux, and on multiple Node.js versions. This is the most time-consuming part of the CI process.
+  - **Post Coverage Comment**: After all tests have successfully passed, a bot will post a comment on your PR. This comment provides a summary of how well your changes are covered by tests.
+- **What you should do**:
+  - Ensure all CI checks pass. A green checkmark ✅ will appear next to your commit when everything is successful.
+  - If a check fails (a red "X" ❌), click the "Details" link next to the failed check to view the logs, identify the problem, and push a fix.
+
+### 3. Ongoing Triage for Pull Requests: `PR Auditing and Label Sync`
+
+This workflow runs periodically to ensure all open PRs are correctly linked to issues and have consistent labels.
+
+- **Workflow File**: `.github/workflows/gemini-scheduled-pr-triage.yml`
+- **When it runs**: Every 15 minutes on all open pull requests.
+- **What it does**:
+  - **Checks for a linked issue**: The bot scans your PR description for a keyword that links it to an issue (e.g., `Fixes #123`, `Closes #456`).
+  - **Adds `status/need-issue`**: If no linked issue is found, the bot will add the `status/need-issue` label to your PR. This is a clear signal that an issue needs to be created and linked.
+  - **Synchronizes labels**: If an issue _is_ linked, the bot ensures the PR's labels perfectly match the issue's labels. It will add any missing labels and remove any that don't belong, and it will remove the `status/need-issue` label if it was present.
+- **What you should do**:
+  - **Always link your PR to an issue.** This is the most important step. Add a line like `Resolves #<issue-number>` to your PR description.
+  - This will ensure your PR is correctly categorized and moves through the review process smoothly.
+
+### 4. Ongoing Triage for Issues: `Scheduled Issue Triage`
+
+This is a fallback workflow to ensure that no issue gets missed by the triage process.
+
+- **Workflow File**: `.github/workflows/gemini-scheduled-issue-triage.yml`
+- **When it runs**: Every hour on all open issues.
+- **What it does**:
+  - It actively seeks out issues that either have no labels at all or still have the `status/need-triage` label.
+  - It then triggers the same powerful Gemini-based analysis as the initial triage bot to apply the correct labels.
+- **What you should do**:
+  - You typically don't need to do anything. This workflow is a safety net to ensure every issue is eventually categorized, even if the initial triage fails.
+
+### 5. Release Automation
+
+This workflow handles the process of packaging and publishing new versions of the Gemini CLI.
+
+- **Workflow File**: `.github/workflows/release.yml`
+- **When it runs**: On a daily schedule for "nightly" releases, and manually for official patch/minor releases.
+- **What it does**:
+  - Automatically builds the project, bumps the version numbers, and publishes the packages to npm.
+  - Creates a corresponding release on GitHub with generated release notes.
+- **What you should do**:
+  - As a contributor, you don't need to do anything for this process. You can be confident that once your PR is merged into the `main` branch, your changes will be included in the very next nightly release.
+
+We hope this detailed overview is helpful. If you have any questions about our automation or processes, please don't hesitate to ask!

docs/keyboard-shortcuts.md

@@ -0,0 +1,62 @@
+# Gemini CLI Keyboard Shortcuts
+
+This document lists the available keyboard shortcuts in the Gemini CLI.
+
+## General
+
+| Shortcut | Description                                                                                                           |
+| -------- | --------------------------------------------------------------------------------------------------------------------- |
+| `Esc`    | Close dialogs and suggestions.                                                                                        |
+| `Ctrl+C` | Exit the application. Press twice to confirm.                                                                         |
+| `Ctrl+D` | Exit the application if the input is empty. Press twice to confirm.                                                   |
+| `Ctrl+L` | Clear the screen.                                                                                                     |
+| `Ctrl+O` | Toggle the display of the debug console.                                                                              |
+| `Ctrl+S` | Allows long responses to print fully, disabling truncation. Use your terminal's scrollback to view the entire output. |
+| `Ctrl+T` | Toggle the display of tool descriptions.                                                                              |
+| `Ctrl+Y` | Toggle auto-approval (YOLO mode) for all tool calls.                                                                  |
+
+## Input Prompt
+
+| Shortcut                                           | Description                                                                                                                         |
+| -------------------------------------------------- | ----------------------------------------------------------------------------------------------------------------------------------- |
+| `!`                                                | Toggle shell mode when the input is empty.                                                                                          |
+| `\` (at end of line) + `Enter`                     | Insert a newline.                                                                                                                   |
+| `Down Arrow`                                       | Navigate down through the input history.                                                                                            |
+| `Enter`                                            | Submit the current prompt.                                                                                                          |
+| `Meta+Delete` / `Ctrl+Delete`                      | Delete the word to the right of the cursor.                                                                                         |
+| `Tab`                                              | Autocomplete the current suggestion if one exists.                                                                                  |
+| `Up Arrow`                                         | Navigate up through the input history.                                                                                              |
+| `Ctrl+A` / `Home`                                  | Move the cursor to the beginning of the line.                                                                                       |
+| `Ctrl+B` / `Left Arrow`                            | Move the cursor one character to the left.                                                                                          |
+| `Ctrl+C`                                           | Clear the input prompt                                                                                                              |
+| `Ctrl+D` / `Delete`                                | Delete the character to the right of the cursor.                                                                                    |
+| `Ctrl+E` / `End`                                   | Move the cursor to the end of the line.                                                                                             |
+| `Ctrl+F` / `Right Arrow`                           | Move the cursor one character to the right.                                                                                         |
+| `Ctrl+H` / `Backspace`                             | Delete the character to the left of the cursor.                                                                                     |
+| `Ctrl+K`                                           | Delete from the cursor to the end of the line.                                                                                      |
+| `Ctrl+Left Arrow` / `Meta+Left Arrow` / `Meta+B`   | Move the cursor one word to the left.                                                                                               |
+| `Ctrl+N`                                           | Navigate down through the input history.                                                                                            |
+| `Ctrl+P`                                           | Navigate up through the input history.                                                                                              |
+| `Ctrl+Right Arrow` / `Meta+Right Arrow` / `Meta+F` | Move the cursor one word to the right.                                                                                              |
+| `Ctrl+U`                                           | Delete from the cursor to the beginning of the line.                                                                                |
+| `Ctrl+V`                                           | Paste clipboard content. If the clipboard contains an image, it will be saved and a reference to it will be inserted in the prompt. |
+| `Ctrl+W` / `Meta+Backspace` / `Ctrl+Backspace`     | Delete the word to the left of the cursor.                                                                                          |
+| `Ctrl+X` / `Meta+Enter`                            | Open the current input in an external editor.                                                                                       |
+
+## Suggestions
+
+| Shortcut        | Description                            |
+| --------------- | -------------------------------------- |
+| `Down Arrow`    | Navigate down through the suggestions. |
+| `Tab` / `Enter` | Accept the selected suggestion.        |
+| `Up Arrow`      | Navigate up through the suggestions.   |
+
+## Radio Button Select
+
+| Shortcut           | Description                                                                                                   |
+| ------------------ | ------------------------------------------------------------------------------------------------------------- |
+| `Down Arrow` / `j` | Move selection down.                                                                                          |
+| `Enter`            | Confirm selection.                                                                                            |
+| `Up Arrow` / `k`   | Move selection up.                                                                                            |
+| `1-9`              | Select an item by its number.                                                                                 |
+| (multi-digit)      | For items with numbers greater than 9, press the digits in quick succession to select the corresponding item. |

docs/sandbox.md

@@ -77,6 +77,24 @@ Built-in profiles (set via `SEATBELT_PROFILE` env var):
 - `restrictive-open`: Strict restrictions, network allowed
 - `restrictive-closed`: Maximum restrictions
 
+### Custom Sandbox Flags
+
+For container-based sandboxing, you can inject custom flags into the `docker` or `podman` command using the `SANDBOX_FLAGS` environment variable. This is useful for advanced configurations, such as disabling security features for specific use cases.
+
+**Example (Podman)**:
+
+To disable SELinux labeling for volume mounts, you can set the following:
+
+```bash
+export SANDBOX_FLAGS="--security-opt label=disable"
+```
+
+Multiple flags can be provided as a space-separated string:
+
+```bash
+export SANDBOX_FLAGS="--flag1 --flag2=value"
+```
+
 ## Linux UID/GID handling
 
 The sandbox automatically handles user permissions on Linux. Override these permissions with:
@@ -111,6 +129,8 @@ export SANDBOX_SET_UID_GID=false  # Disable UID/GID mapping
 DEBUG=1 gemini -s -p "debug command"
 ```
 
+**Note:** If you have `DEBUG=true` in a project's `.env` file, it won't affect gemini-cli due to automatic exclusion. Use `.gemini/.env` files for gemini-cli specific debug settings.
+
 ### Inspect sandbox
 
 ```bash

docs/telemetry.md

@@ -209,6 +209,11 @@ Logs are timestamped records of specific events. The following events are logged
   - **Attributes**:
     - `auth_type`
 
+- `gemini_cli.slash_command`: This event occurs when a user executes a slash command.
+  - **Attributes**:
+    - `command` (string)
+    - `subcommand` (string, if applicable)
+
 ### Metrics
 
 Metrics are numerical measurements of behavior over time. The following metrics are collected for Gemini CLI:

docs/tools/mcp-server.md

@@ -169,6 +169,7 @@ Use the `/mcp auth` command to manage OAuth authentication:
 - **`scopes`** (string[]): Required OAuth scopes
 - **`redirectUri`** (string): Custom redirect URI (defaults to `http://localhost:7777/oauth/callback`)
 - **`tokenParamName`** (string): Query parameter name for tokens in SSE URLs
+- **`audiences`** (string[]): Audiences the token is valid for
 
 #### Token Management
 
@@ -570,3 +571,120 @@ The MCP integration tracks several states:
 - **Conflict resolution:** Tool name conflicts between servers are resolved through automatic prefixing
 
 This comprehensive integration makes MCP servers a powerful way to extend the Gemini CLI's capabilities while maintaining security, reliability, and ease of use.
+
+## Returning Rich Content from Tools
+
+MCP tools are not limited to returning simple text. You can return rich, multi-part content, including text, images, audio, and other binary data in a single tool response. This allows you to build powerful tools that can provide diverse information to the model in a single turn.
+
+All data returned from the tool is processed and sent to the model as context for its next generation, enabling it to reason about or summarize the provided information.
+
+### How It Works
+
+To return rich content, your tool's response must adhere to the MCP specification for a [`CallToolResult`](https://modelcontextprotocol.io/specification/2025-06-18/server/tools#tool-result). The `content` field of the result should be an array of `ContentBlock` objects. The Gemini CLI will correctly process this array, separating text from binary data and packaging it for the model.
+
+You can mix and match different content block types in the `content` array. The supported block types include:
+
+- `text`
+- `image`
+- `audio`
+- `resource` (embedded content)
+- `resource_link`
+
+### Example: Returning Text and an Image
+
+Here is an example of a valid JSON response from an MCP tool that returns both a text description and an image:
+
+```json
+{
+  "content": [
+    {
+      "type": "text",
+      "text": "Here is the logo you requested."
+    },
+    {
+      "type": "image",
+      "data": "BASE64_ENCODED_IMAGE_DATA_HERE",
+      "mimeType": "image/png"
+    },
+    {
+      "type": "text",
+      "text": "The logo was created in 2025."
+    }
+  ]
+}
+```
+
+When the Gemini CLI receives this response, it will:
+
+1.  Extract all the text and combine it into a single `functionResponse` part for the model.
+2.  Present the image data as a separate `inlineData` part.
+3.  Provide a clean, user-friendly summary in the CLI, indicating that both text and an image were received.
+
+This enables you to build sophisticated tools that can provide rich, multi-modal context to the Gemini model.
+
+## MCP Prompts as Slash Commands
+
+In addition to tools, MCP servers can expose predefined prompts that can be executed as slash commands within the Gemini CLI. This allows you to create shortcuts for common or complex queries that can be easily invoked by name.
+
+### Defining Prompts on the Server
+
+Here's a small example of a stdio MCP server that defines prompts:
+
+```ts
+import { McpServer } from '@modelcontextprotocol/sdk/server/mcp.js';
+import { StdioServerTransport } from '@modelcontextprotocol/sdk/server/stdio.js';
+import { z } from 'zod';
+
+const server = new McpServer({
+  name: 'prompt-server',
+  version: '1.0.0',
+});
+
+server.registerPrompt(
+  'poem-writer',
+  {
+    title: 'Poem Writer',
+    description: 'Write a nice haiku',
+    argsSchema: { title: z.string(), mood: z.string().optional() },
+  },
+  ({ title, mood }) => ({
+    messages: [
+      {
+        role: 'user',
+        content: {
+          type: 'text',
+          text: `Write a haiku${mood ? ` with the mood ${mood}` : ''} called ${title}. Note that a haiku is 5 syllables followed by 7 syllables followed by 5 syllables `,
+        },
+      },
+    ],
+  }),
+);
+
+const transport = new StdioServerTransport();
+await server.connect(transport);
+```
+
+This can be included in `settings.json` under `mcpServers` with:
+
+```json
+"nodeServer": {
+  "command": "node",
+  "args": ["filename.ts"],
+}
+```
+
+### Invoking Prompts
+
+Once a prompt is discovered, you can invoke it using its name as a slash command. The CLI will automatically handle parsing arguments.
+
+```bash
+/poem-writer --title="Gemini CLI" --mood="reverent"
+```
+
+or, using positional arguments:
+
+```bash
+/poem-writer "Gemini CLI" reverent
+```
+
+When you run this command, the Gemini CLI executes the `prompts/get` method on the MCP server with the provided arguments. The server is responsible for substituting the arguments into the prompt template and returning the final prompt text. The CLI then sends this prompt to the model for execution. This provides a convenient way to automate and share common workflows.

docs/tools/memory.md

@@ -4,7 +4,7 @@ This document describes the `save_memory` tool for the Gemini CLI.
 
 ## Description
 
-Use `save_memory` to save and recall information across your Gemini CLI sessions. With `save_memory`, you can direct the CLI to remember key details across sessions, providing personalized and directed assistance.
+Use `save_memory` to save and recall information across your Qwen Code sessions. With `save_memory`, you can direct the CLI to remember key details across sessions, providing personalized and directed assistance.
 
 ### Arguments
 
@@ -14,9 +14,9 @@ Use `save_memory` to save and recall information across your Gemini CLI sessions
 
 ## How to use `save_memory` with the Gemini CLI
 
-The tool appends the provided `fact` to a special `GEMINI.md` file located in the user's home directory (`~/.gemini/GEMINI.md`). This file can be configured to have a different name.
+The tool appends the provided `fact` to your context file in the user's home directory (`~/.qwen/QWEN.md` by default). This filename can be configured via `contextFileName`.
 
-Once added, the facts are stored under a `## Gemini Added Memories` section. This file is loaded as context in subsequent sessions, allowing the CLI to recall the saved information.
+Once added, the facts are stored under a `## Qwen Added Memories` section. This file is loaded as context in subsequent sessions, allowing the CLI to recall the saved information.
 
 Usage:
 

docs/tools/multi-file.md

@@ -11,11 +11,13 @@ Use `read_many_files` to read content from multiple files specified by paths or
 
 `read_many_files` can be used to perform tasks such as getting an overview of a codebase, finding where specific functionality is implemented, reviewing documentation, or gathering context from multiple configuration files.
 
+**Note:** `read_many_files` looks for files following the provided paths or glob patterns. A directory path such as `"/docs"` will return an empty result; the tool requires a pattern such as `"/docs/*"` or `"/docs/*.md"` to identify the relevant files.
+
 ### Arguments
 
 `read_many_files` takes the following arguments:
 
-- `paths` (list[string], required): An array of glob patterns or paths relative to the tool's target directory (e.g., `["src/**/*.ts"]`, `["README.md", "docs/", "assets/logo.png"]`).
+- `paths` (list[string], required): An array of glob patterns or paths relative to the tool's target directory (e.g., `["src/**/*.ts"]`, `["README.md", "docs/*", "assets/logo.png"]`).
 - `exclude` (list[string], optional): Glob patterns for files/directories to exclude (e.g., `["**/*.log", "temp/"]`). These are added to default excludes if `useDefaultExcludes` is true.
 - `include` (list[string], optional): Additional glob patterns to include. These are merged with `paths` (e.g., `["*.test.ts"]` to specifically add test files if they were broadly excluded, or `["images/*.jpg"]` to include specific image types).
 - `recursive` (boolean, optional): Whether to search recursively. This is primarily controlled by `**` in glob patterns. Defaults to `true`.
@@ -50,7 +52,7 @@ Read the main README, all Markdown files in the `docs` directory, and a specific
 read_many_files(paths=["README.md", "docs/**/*.md", "assets/logo.png"], exclude=["docs/OLD_README.md"])
 ```
 
-Read all JavaScript files but explicitly including test files and all JPEGs in an `images` folder:
+Read all JavaScript files but explicitly include test files and all JPEGs in an `images` folder:
 
 ```
 read_many_files(paths=["**/*.js"], include=["**/*.test.js", "images/**/*.jpg"], useDefaultExcludes=False)

docs/tools/shell.md

@@ -137,6 +137,5 @@ To block all shell commands, add the `run_shell_command` wildcard to `excludeToo
 
 ## Security Note for `excludeTools`
 
-Command-specific restrictions in
-`excludeTools` for `run_shell_command` are based on simple string matching and can be easily bypassed. This feature is **not a security mechanism** and should not be relied upon to safely execute untrusted code. It is recommended to use `coreTools` to explicitly select commands
+Command-specific restrictions in `excludeTools` for `run_shell_command` are based on simple string matching and can be easily bypassed. This feature is **not a security mechanism** and should not be relied upon to safely execute untrusted code. It is recommended to use `coreTools` to explicitly select commands
 that can be executed.

docs/tools/web-fetch.md

@@ -4,24 +4,25 @@ This document describes the `web_fetch` tool for the Gemini CLI.
 
 ## Description
 
-Use `web_fetch` to summarize, compare, or extract information from web pages. The `web_fetch` tool processes content from one or more URLs (up to 20) embedded in a prompt. `web_fetch` takes a natural language prompt and returns a generated response.
+Use `web_fetch` to fetch content from a specified URL and process it using an AI model. The tool takes a URL and a prompt as input, fetches the URL content, converts HTML to markdown, and processes the content with the prompt using a small, fast model.
 
 ### Arguments
 
-`web_fetch` takes one argument:
+`web_fetch` takes two arguments:
 
-- `prompt` (string, required): A comprehensive prompt that includes the URL(s) (up to 20) to fetch and specific instructions on how to process their content. For example: `"Summarize https://example.com/article and extract key points from https://another.com/data"`. The prompt must contain at least one URL starting with `http://` or `https://`.
+- `url` (string, required): The URL to fetch content from. Must be a fully-formed valid URL starting with `http://` or `https://`.
+- `prompt` (string, required): The prompt describing what information you want to extract from the page content.
 
 ## How to use `web_fetch` with the Gemini CLI
 
-To use `web_fetch` with the Gemini CLI, provide a natural language prompt that contains URLs. The tool will ask for confirmation before fetching any URLs. Once confirmed, the tool will process URLs through Gemini API's `urlContext`.
+To use `web_fetch` with the Gemini CLI, provide a URL and a prompt describing what you want to extract from that URL. The tool will ask for confirmation before fetching the URL. Once confirmed, the tool will fetch the content directly and process it using an AI model.
 
-If the Gemini API cannot access the URL, the tool will fall back to fetching content directly from the local machine. The tool will format the response, including source attribution and citations where possible. The tool will then provide the response to the user.
+The tool automatically converts HTML to text, handles GitHub blob URLs (converting them to raw URLs), and upgrades HTTP URLs to HTTPS for security.
 
 Usage:
 
 ```
-web_fetch(prompt="Your prompt, including a URL such as https://google.com.")
+web_fetch(url="https://example.com", prompt="Summarize the main points of this article")
 ```
 
 ## `web_fetch` examples
@@ -29,16 +30,25 @@ web_fetch(prompt="Your prompt, including a URL such as https://google.com.")
 Summarize a single article:
 
 ```
-web_fetch(prompt="Can you summarize the main points of https://example.com/news/latest")
+web_fetch(url="https://example.com/news/latest", prompt="Can you summarize the main points of this article?")
 ```
 
-Compare two articles:
+Extract specific information:
 
 ```
-web_fetch(prompt="What are the differences in the conclusions of these two papers: https://arxiv.org/abs/2401.0001 and https://arxiv.org/abs/2401.0002?")
+web_fetch(url="https://arxiv.org/abs/2401.0001", prompt="What are the key findings and methodology described in this paper?")
+```
+
+Analyze GitHub documentation:
+
+```
+web_fetch(url="https://github.com/google/gemini-react/blob/main/README.md", prompt="What are the installation steps and main features?")
 ```
 
 ## Important notes
 
-- **URL processing:** `web_fetch` relies on the Gemini API's ability to access and process the given URLs.
+- **Single URL processing:** `web_fetch` processes one URL at a time. To analyze multiple URLs, make separate calls to the tool.
+- **URL format:** The tool automatically upgrades HTTP URLs to HTTPS and converts GitHub blob URLs to raw format for better content access.
+- **Content processing:** The tool fetches content directly and processes it using an AI model, converting HTML to readable text format.
 - **Output quality:** The quality of the output will depend on the clarity of the instructions in the prompt.
+- **MCP tools:** If an MCP-provided web fetch tool is available (starting with "mcp\_\_"), prefer using that tool as it may have fewer restrictions.

docs/tools/web-search.md

@@ -1,36 +1,43 @@
-# Web Search Tool (`google_web_search`)
+# Web Search Tool (`web_search`)
 
-This document describes the `google_web_search` tool.
+This document describes the `web_search` tool.
 
 ## Description
 
-Use `google_web_search` to perform a web search using Google Search via the Gemini API. The `google_web_search` tool returns a summary of web results with sources.
+Use `web_search` to perform a web search using the Tavily API. The tool returns a concise answer with sources when possible.
 
 ### Arguments
 
-`google_web_search` takes one argument:
+`web_search` takes one argument:
 
 - `query` (string, required): The search query.
 
-## How to use `google_web_search` with the Gemini CLI
+## How to use `web_search`
 
-The `google_web_search` tool sends a query to the Gemini API, which then performs a web search. `google_web_search` will return a generated response based on the search results, including citations and sources.
+`web_search` calls the Tavily API directly. You must configure the `TAVILY_API_KEY` through one of the following methods:
+
+1. **Settings file**: Add `"tavilyApiKey": "your-key-here"` to your `settings.json`
+2. **Environment variable**: Set `TAVILY_API_KEY` in your environment or `.env` file
+3. **Command line**: Use `--tavily-api-key your-key-here` when running the CLI
+
+If the key is not configured, the tool will be disabled and skipped.
 
 Usage:
 
 ```
-google_web_search(query="Your query goes here.")
+web_search(query="Your query goes here.")
 ```
 
-## `google_web_search` examples
+## `web_search` examples
 
 Get information on a topic:
 
 ```
-google_web_search(query="latest advancements in AI-powered code generation")
+web_search(query="latest advancements in AI-powered code generation")
 ```
 
 ## Important notes
 
-- **Response returned:** The `google_web_search` tool returns a processed summary, not a raw list of search results.
-- **Citations:** The response includes citations to the sources used to generate the summary.
+- **Response returned:** The `web_search` tool returns a concise answer when available, with a list of source links.
+- **Citations:** Source links are appended as a numbered list.
+- **API key:** Configure `TAVILY_API_KEY` via settings.json, environment variables, .env files, or command line arguments. If not configured, the tool is not registered.

docs/tos-privacy.md

@@ -63,6 +63,8 @@ You may opt-out from sending Usage Statistics to Google by following the instruc
 
 Whether your code, including prompts and answers, is used to train Google's models depends on the type of authentication method you use and your account type.
 
+By default (if you have not opted out):
+
 - **Google account with Gemini Code Assist for Individuals**: Yes. When you use your personal Google account, the [Gemini Code Assist Privacy Notice for Individuals](https://developers.google.com/gemini-code-assist/resources/privacy-notice-gemini-code-assist-individuals) applies. Under this notice,
   your **prompts, answers, and related code are collected** and may be used to improve Google's products, including for model training.
 - **Google account with Gemini Code Assist for Workspace, Standard, or Enterprise**: No. For these accounts, your data is governed by the [Gemini Code Assist Privacy Notices](https://cloud.google.com/gemini/docs/codeassist/security-privacy-compliance#standard_and_enterprise_data_protection_and_privacy) terms, which treat your inputs as confidential. Your **prompts, answers, and related code are not collected** and are not used to train models.
@@ -71,17 +73,21 @@ Whether your code, including prompts and answers, is used to train Google's mode
   - **Paid services**: No. When you use the Gemini API key via the Gemini Developer API with a paid service, the [Gemini API Terms of Service - Paid Services](https://ai.google.dev/gemini-api/terms#paid-services) terms apply, which treats your inputs as confidential. Your **prompts, answers, and related code are not collected** and are not used to train models.
 - **Gemini API key via the Vertex AI GenAI API**: No. For these accounts, your data is governed by the [Google Cloud Privacy Notice](https://cloud.google.com/terms/cloud-privacy-notice) terms, which treat your inputs as confidential. Your **prompts, answers, and related code are not collected** and are not used to train models.
 
+For more information about opting out, refer to the next question.
+
 ### 2. What are Usage Statistics and what does the opt-out control?
 
 The **Usage Statistics** setting is the single control for all optional data collection in the Gemini CLI.
 
 The data it collects depends on your account and authentication type:
 
-- **Google account with Gemini Code Assist for Individuals**: When enabled, this setting allows Google to collect both anonymous telemetry (for example, commands run and performance metrics) and **your prompts and answers** for model improvement.
-- **Google account with Gemini Code Assist for Workspace, Standard, or Enterprise**: This setting only controls the collection of anonymous telemetry. Your prompts and answers are never collected, regardless of this setting.
+- **Google account with Gemini Code Assist for Individuals**: When enabled, this setting allows Google to collect both anonymous telemetry (for example, commands run and performance metrics) and **your prompts and answers, including code,** for model improvement.
+- **Google account with Gemini Code Assist for Workspace, Standard, or Enterprise**: This setting only controls the collection of anonymous telemetry. Your prompts and answers, including code, are never collected, regardless of this setting.
 - **Gemini API key via the Gemini Developer API**:
-  **Unpaid services**: When enabled, this setting allows Google to collect both anonymous telemetry (like commands run and performance metrics) and **your prompts and answers** for model improvement. When disabled we will use your data as described in [How Google Uses Your Data](https://ai.google.dev/gemini-api/terms#data-use-unpaid).
+  **Unpaid services**: When enabled, this setting allows Google to collect both anonymous telemetry (like commands run and performance metrics) and **your prompts and answers, including code,** for model improvement. When disabled we will use your data as described in [How Google Uses Your Data](https://ai.google.dev/gemini-api/terms#data-use-unpaid).
   **Paid services**: This setting only controls the collection of anonymous telemetry. Google logs prompts and responses for a limited period of time, solely for the purpose of detecting violations of the Prohibited Use Policy and any required legal or regulatory disclosures.
-- **Gemini API key via the Vertex AI GenAI API:** This setting only controls the collection of anonymous telemetry. Your prompts and answers are never collected, regardless of this setting.
+- **Gemini API key via the Vertex AI GenAI API:** This setting only controls the collection of anonymous telemetry. Your prompts and answers, including code, are never collected, regardless of this setting.
+
+Please refer to the Privacy Notice that applies to your authentication method for more information about what data is collected and how this data is used.
 
 You can disable Usage Statistics for any account type by following the instructions in the [Usage Statistics Configuration](./cli/configuration.md#usage-statistics) documentation.

docs/troubleshooting.md

@@ -1,28 +1,38 @@
-# Troubleshooting Guide
+# Troubleshooting guide
 
-This guide provides solutions to common issues and debugging tips.
+This guide provides solutions to common issues and debugging tips, including topics on:
 
-## Authentication
+- Authentication or login errors
+- Frequently asked questions (FAQs)
+- Debugging tips
+- Existing GitHub Issues similar to yours or creating new Issues
+
+## Authentication or login errors
 
 - **Error: `Failed to login. Message: Request contains an invalid argument`**
-  - Users with Google Workspace accounts, or users with Google Cloud accounts
+  - Users with Google Workspace accounts or Google Cloud accounts
     associated with their Gmail accounts may not be able to activate the free
     tier of the Google Code Assist plan.
   - For Google Cloud accounts, you can work around this by setting
     `GOOGLE_CLOUD_PROJECT` to your project ID.
-  - You can also grab an API key from [AI Studio](https://aistudio.google.com/app/apikey), which also includes a
+  - Alternatively, you can obtain the Gemini API key from
+    [Google AI Studio](http://aistudio.google.com/app/apikey), which also includes a
     separate free tier.
 
 ## Frequently asked questions (FAQs)
 
 - **Q: How do I update Gemini CLI to the latest version?**
-  - A: If installed globally via npm, update Gemini CLI using the command `npm install -g @google/gemini-cli@latest`. If run from source, pull the latest changes from the repository and rebuild using `npm run build`.
+  - A: If you installed it globally via `npm`, update it using the command `npm install -g @google/gemini-cli@latest`. If you compiled it from source, pull the latest changes from the repository, and then rebuild using the command `npm run build`.
 
-- **Q: Where are Gemini CLI configuration files stored?**
-  - A: The CLI configuration is stored within two `settings.json` files: one in your home directory and one in your project's root directory. In both locations, `settings.json` is found in the `.gemini/` folder. Refer to [CLI Configuration](./cli/configuration.md) for more details.
+- **Q: Where are the Gemini CLI configuration or settings files stored?**
+  - A: The Gemini CLI configuration is stored in two `settings.json` files:
+    1. In your home directory: `~/.gemini/settings.json`.
+    2. In your project's root directory: `./.gemini/settings.json`.
+
+    Refer to [Gemini CLI Configuration](./cli/configuration.md) for more details.
 
 - **Q: Why don't I see cached token counts in my stats output?**
-  - A: Cached token information is only displayed when cached tokens are being used. This feature is available for API key users (Gemini API key or Vertex AI) but not for OAuth users (Google Personal/Enterprise accounts) at this time, as the Code Assist API does not support cached content creation. You can still view your total token usage with the `/stats` command.
+  - A: Cached token information is only displayed when cached tokens are being used. This feature is available for API key users (Gemini API key or Google Cloud Vertex AI) but not for OAuth users (such as Google Personal/Enterprise accounts like Google Gmail or Google Workspace, respectively). This is because the Gemini Code Assist API does not support cached content creation. You can still view your total token usage using the `/stats` command in Gemini CLI.
 
 ## Common error messages and solutions
 
@@ -31,28 +41,34 @@ This guide provides solutions to common issues and debugging tips.
   - **Solution:**
     Either stop the other process that is using the port or configure the MCP server to use a different port.
 
-- **Error: Command not found (when attempting to run Gemini CLI).**
-  - **Cause:** Gemini CLI is not correctly installed or not in your system's PATH.
+- **Error: Command not found (when attempting to run Gemini CLI with `gemini`).**
+  - **Cause:** Gemini CLI is not correctly installed or it is not in your system's `PATH`.
   - **Solution:**
-    1.  Ensure Gemini CLI installation was successful.
-    2.  If installed globally, check that your npm global binary directory is in your PATH.
-    3.  If running from source, ensure you are using the correct command to invoke it (e.g., `node packages/cli/dist/index.js ...`).
+    The update depends on how you installed Gemini CLI:
+    - If you installed `gemini` globally, check that your `npm` global binary directory is in your `PATH`. You can update Gemini CLI using the command `npm install -g @google/gemini-cli@latest`.
+    - If you are running `gemini` from source, ensure you are using the correct command to invoke it (e.g., `node packages/cli/dist/index.js ...`). To update Gemini CLI, pull the latest changes from the repository, and then rebuild using the command `npm run build`.
 
 - **Error: `MODULE_NOT_FOUND` or import errors.**
   - **Cause:** Dependencies are not installed correctly, or the project hasn't been built.
   - **Solution:**
     1.  Run `npm install` to ensure all dependencies are present.
     2.  Run `npm run build` to compile the project.
+    3.  Verify that the build completed successfully with `npm run start`.
 
 - **Error: "Operation not permitted", "Permission denied", or similar.**
-  - **Cause:** If sandboxing is enabled, then the application is likely attempting an operation restricted by your sandbox, such as writing outside the project directory or system temp directory.
-  - **Solution:** See [Sandboxing](./cli/configuration.md#sandboxing) for more information, including how to customize your sandbox configuration.
+  - **Cause:** When sandboxing is enabled, Gemini CLI may attempt operations that are restricted by your sandbox configuration, such as writing outside the project directory or system temp directory.
+  - **Solution:** Refer to the [Configuration: Sandboxing](./cli/configuration.md#sandboxing) documentation for more information, including how to customize your sandbox configuration.
 
-- **CLI is not interactive in "CI" environments**
-  - **Issue:** The CLI does not enter interactive mode (no prompt appears) if an environment variable starting with `CI_` (e.g., `CI_TOKEN`) is set. This is because the `is-in-ci` package, used by the underlying UI framework, detects these variables and assumes a non-interactive CI environment.
-  - **Cause:** The `is-in-ci` package checks for the presence of `CI`, `CONTINUOUS_INTEGRATION`, or any environment variable with a `CI_` prefix. When any of these are found, it signals that the environment is non-interactive, which prevents the CLI from starting in its interactive mode.
+- **Gemini CLI is not running in interactive mode in "CI" environments**
+  - **Issue:** The Gemini CLI does not enter interactive mode (no prompt appears) if an environment variable starting with `CI_` (e.g., `CI_TOKEN`) is set. This is because the `is-in-ci` package, used by the underlying UI framework, detects these variables and assumes a non-interactive CI environment.
+  - **Cause:** The `is-in-ci` package checks for the presence of `CI`, `CONTINUOUS_INTEGRATION`, or any environment variable with a `CI_` prefix. When any of these are found, it signals that the environment is non-interactive, which prevents the Gemini CLI from starting in its interactive mode.
   - **Solution:** If the `CI_` prefixed variable is not needed for the CLI to function, you can temporarily unset it for the command. e.g., `env -u CI_TOKEN gemini`
 
+- **DEBUG mode not working from project .env file**
+  - **Issue:** Setting `DEBUG=true` in a project's `.env` file doesn't enable debug mode for gemini-cli.
+  - **Cause:** The `DEBUG` and `DEBUG_MODE` variables are automatically excluded from project `.env` files to prevent interference with gemini-cli behavior.
+  - **Solution:** Use a `.gemini/.env` file instead, or configure the `excludedProjectEnvVars` setting in your `settings.json` to exclude fewer variables.
+
 ## Debugging Tips
 
 - **CLI debugging:**
@@ -67,9 +83,11 @@ This guide provides solutions to common issues and debugging tips.
 - **Tool issues:**
   - If a specific tool is failing, try to isolate the issue by running the simplest possible version of the command or operation the tool performs.
   - For `run_shell_command`, check that the command works directly in your shell first.
-  - For file system tools, double-check paths and permissions.
+  - For _file system tools_, verify that paths are correct and check the permissions.
 
 - **Pre-flight checks:**
   - Always run `npm run preflight` before committing code. This can catch many common issues related to formatting, linting, and type errors.
 
-If you encounter an issue not covered here, consider searching the project's issue tracker on GitHub or reporting a new issue with detailed information.
+## Existing GitHub Issues similar to yours or creating new Issues
+
+If you encounter an issue that was not covered here in this _Troubleshooting guide_, consider searching the Gemini CLI [Issue tracker on GitHub](https://github.com/google-gemini/gemini-cli/issues). If you can't find an issue similar to yours, consider creating a new GitHub Issue with a detailed description. Pull requests are also welcome!

eslint.config.js

@@ -34,6 +34,7 @@ export default tseslint.config(
       'packages/server/dist/**',
       'packages/vscode-ide-companion/dist/**',
       'bundle/**',
+      'package/bundle/**',
     ],
   },
   eslint.configs.recommended,
@@ -150,24 +151,6 @@ export default tseslint.config(
       'default-case': 'error',
     },
   },
-  {
-    files: ['./**/*.{tsx,ts,js}'],
-    plugins: {
-      'license-header': licenseHeader,
-    },
-    rules: {
-      'license-header/header': [
-        'error',
-        [
-          '/**',
-          ' * @license',
-          ' * Copyright 2025 Google LLC',
-          ' * SPDX-License-Identifier: Apache-2.0',
-          ' */',
-        ],
-      ],
-    },
-  },
   // extra settings for scripts that we run directly with node
   {
     files: ['./scripts/**/*.js', 'esbuild.config.js'],
@@ -203,6 +186,21 @@ export default tseslint.config(
       '@typescript-eslint/no-require-imports': 'off',
     },
   },
+  // extra settings for scripts that we run directly with node
+  {
+    files: ['packages/vscode-ide-companion/scripts/**/*.js'],
+    languageOptions: {
+      globals: {
+        ...globals.node,
+        process: 'readonly',
+        console: 'readonly',
+      },
+    },
+    rules: {
+      'no-restricted-syntax': 'off',
+      '@typescript-eslint/no-require-imports': 'off',
+    },
+  },
   // Prettier config must be last
   prettierConfig,
   // extra settings for scripts that we run directly with node

integration-tests/file-system.test.js

@@ -6,25 +6,84 @@
 
 import { strict as assert } from 'assert';
 import { test } from 'node:test';
-import { TestRig } from './test-helper.js';
+import { TestRig, printDebugInfo, validateModelOutput } from './test-helper.js';
 
-test('reads a file', (t) => {
+test('should be able to read a file', async () => {
   const rig = new TestRig();
-  rig.setup(t.name);
+  await rig.setup('should be able to read a file');
   rig.createFile('test.txt', 'hello world');
 
-  const output = rig.run(`read the file name test.txt`);
+  const result = await rig.run(
+    `read the file test.txt and show me its contents`,
+  );
 
-  assert.ok(output.toLowerCase().includes('hello'));
+  const foundToolCall = await rig.waitForToolCall('read_file');
+
+  // Add debugging information
+  if (!foundToolCall || !result.includes('hello world')) {
+    printDebugInfo(rig, result, {
+      'Found tool call': foundToolCall,
+      'Contains hello world': result.includes('hello world'),
+    });
+  }
+
+  assert.ok(foundToolCall, 'Expected to find a read_file tool call');
+
+  // Validate model output - will throw if no output, warn if missing expected content
+  validateModelOutput(result, 'hello world', 'File read test');
 });
 
-test('writes a file', (t) => {
+test('should be able to write a file', async () => {
   const rig = new TestRig();
-  rig.setup(t.name);
+  await rig.setup('should be able to write a file');
   rig.createFile('test.txt', '');
 
-  rig.run(`edit test.txt to have a hello world message`);
+  const result = await rig.run(`edit test.txt to have a hello world message`);
+
+  // Accept multiple valid tools for editing files
+  const foundToolCall = await rig.waitForAnyToolCall([
+    'write_file',
+    'edit',
+    'replace',
+  ]);
+
+  // Add debugging information
+  if (!foundToolCall) {
+    printDebugInfo(rig, result);
+  }
+
+  assert.ok(
+    foundToolCall,
+    'Expected to find a write_file, edit, or replace tool call',
+  );
+
+  // Validate model output - will throw if no output
+  validateModelOutput(result, null, 'File write test');
 
   const fileContent = rig.readFile('test.txt');
-  assert.ok(fileContent.toLowerCase().includes('hello'));
+
+  // Add debugging for file content
+  if (!fileContent.toLowerCase().includes('hello')) {
+    const writeCalls = rig
+      .readToolLogs()
+      .filter((t) => t.toolRequest.name === 'write_file')
+      .map((t) => t.toolRequest.args);
+
+    printDebugInfo(rig, result, {
+      'File content mismatch': true,
+      'Expected to contain': 'hello',
+      'Actual content': fileContent,
+      'Write tool calls': JSON.stringify(writeCalls),
+    });
+  }
+
+  assert.ok(
+    fileContent.toLowerCase().includes('hello'),
+    'Expected file to contain hello',
+  );
+
+  // Log success info if verbose
+  if (process.env.VERBOSE === 'true') {
+    console.log('File written successfully with hello message.');
+  }
 });

integration-tests/google_web_search.test.js

@@ -1,19 +0,0 @@
-/**
- * @license
- * Copyright 2025 Google LLC
- * SPDX-License-Identifier: Apache-2.0
- */
-
-import { test } from 'node:test';
-import { strict as assert } from 'assert';
-import { TestRig } from './test-helper.js';
-
-test('should be able to search the web', async (t) => {
-  const rig = new TestRig();
-  rig.setup(t.name);
-
-  const prompt = `what planet do we live on`;
-  const result = await rig.run(prompt);
-
-  assert.ok(result.toLowerCase().includes('earth'));
-});

integration-tests/list_directory.test.js

@@ -6,19 +6,57 @@
 
 import { test } from 'node:test';
 import { strict as assert } from 'assert';
-import { TestRig } from './test-helper.js';
+import { TestRig, printDebugInfo, validateModelOutput } from './test-helper.js';
+import { existsSync } from 'fs';
+import { join } from 'path';
 
-test('should be able to list a directory', async (t) => {
+test('should be able to list a directory', async () => {
   const rig = new TestRig();
-  rig.setup(t.name);
+  await rig.setup('should be able to list a directory');
   rig.createFile('file1.txt', 'file 1 content');
   rig.mkdir('subdir');
   rig.sync();
 
-  const prompt = `Can you list the files in the current directory. Display them in the style of 'ls'`;
-  const result = rig.run(prompt);
+  // Poll for filesystem changes to propagate in containers
+  await rig.poll(
+    () => {
+      // Check if the files exist in the test directory
+      const file1Path = join(rig.testDir, 'file1.txt');
+      const subdirPath = join(rig.testDir, 'subdir');
+      return existsSync(file1Path) && existsSync(subdirPath);
+    },
+    1000, // 1 second max wait
+    50, // check every 50ms
+  );
 
-  const lines = result.split('\n').filter((line) => line.trim() !== '');
-  assert.ok(lines.some((line) => line.includes('file1.txt')));
-  assert.ok(lines.some((line) => line.includes('subdir')));
+  const prompt = `Can you list the files in the current directory. Display them in the style of 'ls'`;
+
+  const result = await rig.run(prompt);
+
+  const foundToolCall = await rig.waitForToolCall('list_directory');
+
+  // Add debugging information
+  if (
+    !foundToolCall ||
+    !result.includes('file1.txt') ||
+    !result.includes('subdir')
+  ) {
+    const allTools = printDebugInfo(rig, result, {
+      'Found tool call': foundToolCall,
+      'Contains file1.txt': result.includes('file1.txt'),
+      'Contains subdir': result.includes('subdir'),
+    });
+
+    console.error(
+      'List directory calls:',
+      allTools
+        .filter((t) => t.toolRequest.name === 'list_directory')
+        .map((t) => t.toolRequest.args),
+    );
+  }
+
+  assert.ok(foundToolCall, 'Expected to find a list_directory tool call');
+
+  // Validate model output - will throw if no output, warn if missing expected content
+  validateModelOutput(result, ['file1.txt', 'subdir'], 'List directory test');
 });

integration-tests/read_many_files.test.js

@@ -6,17 +6,45 @@
 
 import { test } from 'node:test';
 import { strict as assert } from 'assert';
-import { TestRig } from './test-helper.js';
+import { TestRig, printDebugInfo, validateModelOutput } from './test-helper.js';
 
-test.skip('should be able to read multiple files', async (t) => {
+test('should be able to read multiple files', async () => {
   const rig = new TestRig();
-  rig.setup(t.name);
+  await rig.setup('should be able to read multiple files');
   rig.createFile('file1.txt', 'file 1 content');
   rig.createFile('file2.txt', 'file 2 content');
 
-  const prompt = `Read the files in this directory, list them and print them to the screen`;
+  const prompt = `Please use read_many_files to read file1.txt and file2.txt and show me what's in them`;
+
   const result = await rig.run(prompt);
 
-  assert.ok(result.includes('file 1 content'));
-  assert.ok(result.includes('file 2 content'));
+  // Check for either read_many_files or multiple read_file calls
+  const allTools = rig.readToolLogs();
+  const readManyFilesCall = await rig.waitForToolCall('read_many_files');
+  const readFileCalls = allTools.filter(
+    (t) => t.toolRequest.name === 'read_file',
+  );
+
+  // Accept either read_many_files OR at least 2 read_file calls
+  const foundValidPattern = readManyFilesCall || readFileCalls.length >= 2;
+
+  // Add debugging information
+  if (!foundValidPattern) {
+    printDebugInfo(rig, result, {
+      'read_many_files called': readManyFilesCall,
+      'read_file calls': readFileCalls.length,
+    });
+  }
+
+  assert.ok(
+    foundValidPattern,
+    'Expected to find either read_many_files or multiple read_file tool calls',
+  );
+
+  // Validate model output - will throw if no output, warn if missing expected content
+  validateModelOutput(
+    result,
+    ['file 1 content', 'file 2 content'],
+    'Read many files test',
+  );
 });

integration-tests/replace.test.js

@@ -6,17 +6,61 @@
 
 import { test } from 'node:test';
 import { strict as assert } from 'assert';
-import { TestRig } from './test-helper.js';
+import { TestRig, printDebugInfo, validateModelOutput } from './test-helper.js';
 
-test('should be able to replace content in a file', async (t) => {
+test('should be able to replace content in a file', async () => {
   const rig = new TestRig();
-  rig.setup(t.name);
+  await rig.setup('should be able to replace content in a file');
 
   const fileName = 'file_to_replace.txt';
-  rig.createFile(fileName, 'original content');
+  const originalContent = 'original content';
+  const expectedContent = 'replaced content';
+
+  rig.createFile(fileName, originalContent);
   const prompt = `Can you replace 'original' with 'replaced' in the file 'file_to_replace.txt'`;
 
-  await rig.run(prompt);
+  const result = await rig.run(prompt);
+
+  const foundToolCall = await rig.waitForToolCall('replace');
+
+  // Add debugging information
+  if (!foundToolCall) {
+    printDebugInfo(rig, result);
+  }
+
+  assert.ok(foundToolCall, 'Expected to find a replace tool call');
+
+  // Validate model output - will throw if no output, warn if missing expected content
+  validateModelOutput(
+    result,
+    ['replaced', 'file_to_replace.txt'],
+    'Replace content test',
+  );
+
   const newFileContent = rig.readFile(fileName);
-  assert.strictEqual(newFileContent, 'replaced content');
+
+  // Add debugging for file content
+  if (newFileContent !== expectedContent) {
+    console.error('File content mismatch - Debug info:');
+    console.error('Expected:', expectedContent);
+    console.error('Actual:', newFileContent);
+    console.error(
+      'Tool calls:',
+      rig.readToolLogs().map((t) => ({
+        name: t.toolRequest.name,
+        args: t.toolRequest.args,
+      })),
+    );
+  }
+
+  assert.strictEqual(
+    newFileContent,
+    expectedContent,
+    'File content should be updated correctly',
+  );
+
+  // Log success info if verbose
+  if (process.env.VERBOSE === 'true') {
+    console.log('File replaced successfully. New content:', newFileContent);
+  }
 });

integration-tests/run-tests.js

@@ -101,6 +101,7 @@ async function main() {
           KEEP_OUTPUT: keepOutput.toString(),
           VERBOSE: verbose.toString(),
           TEST_FILE_NAME: testFileName,
+          TELEMETRY_LOG_FILE: join(testFileDir, 'telemetry.log'),
         },
       });
 

integration-tests/run_shell_command.test.js

@@ -6,26 +6,58 @@
 
 import { test } from 'node:test';
 import { strict as assert } from 'assert';
-import { TestRig } from './test-helper.js';
+import { TestRig, printDebugInfo, validateModelOutput } from './test-helper.js';
 
-test('should be able to run a shell command', async (t) => {
+test('should be able to run a shell command', async () => {
   const rig = new TestRig();
-  rig.setup(t.name);
-  rig.createFile('blah.txt', 'some content');
+  await rig.setup('should be able to run a shell command');
 
-  const prompt = `Can you use ls to list the contexts of the current folder`;
-  const result = rig.run(prompt);
+  const prompt = `Please run the command "echo hello-world" and show me the output`;
 
-  assert.ok(result.includes('blah.txt'));
+  const result = await rig.run(prompt);
+
+  const foundToolCall = await rig.waitForToolCall('run_shell_command');
+
+  // Add debugging information
+  if (!foundToolCall || !result.includes('hello-world')) {
+    printDebugInfo(rig, result, {
+      'Found tool call': foundToolCall,
+      'Contains hello-world': result.includes('hello-world'),
+    });
+  }
+
+  assert.ok(foundToolCall, 'Expected to find a run_shell_command tool call');
+
+  // Validate model output - will throw if no output, warn if missing expected content
+  // Model often reports exit code instead of showing output
+  validateModelOutput(
+    result,
+    ['hello-world', 'exit code 0'],
+    'Shell command test',
+  );
 });
 
-test('should be able to run a shell command via stdin', async (t) => {
+test('should be able to run a shell command via stdin', async () => {
   const rig = new TestRig();
-  rig.setup(t.name);
-  rig.createFile('blah.txt', 'some content');
+  await rig.setup('should be able to run a shell command via stdin');
 
-  const prompt = `Can you use ls to list the contexts of the current folder`;
-  const result = rig.run({ stdin: prompt });
+  const prompt = `Please run the command "echo test-stdin" and show me what it outputs`;
 
-  assert.ok(result.includes('blah.txt'));
+  const result = await rig.run({ stdin: prompt });
+
+  const foundToolCall = await rig.waitForToolCall('run_shell_command');
+
+  // Add debugging information
+  if (!foundToolCall || !result.includes('test-stdin')) {
+    printDebugInfo(rig, result, {
+      'Test type': 'Stdin test',
+      'Found tool call': foundToolCall,
+      'Contains test-stdin': result.includes('test-stdin'),
+    });
+  }
+
+  assert.ok(foundToolCall, 'Expected to find a run_shell_command tool call');
+
+  // Validate model output - will throw if no output, warn if missing expected content
+  validateModelOutput(result, 'test-stdin', 'Shell command stdin test');
 });

integration-tests/save_memory.test.js

@@ -6,16 +6,36 @@
 
 import { test } from 'node:test';
 import { strict as assert } from 'assert';
-import { TestRig } from './test-helper.js';
+import { TestRig, printDebugInfo, validateModelOutput } from './test-helper.js';
 
-test('should be able to save to memory', async (t) => {
+test('should be able to save to memory', async () => {
   const rig = new TestRig();
-  rig.setup(t.name);
+  await rig.setup('should be able to save to memory');
 
   const prompt = `remember that my favorite color is  blue.
 
   what is my favorite color? tell me that and surround it with $ symbol`;
   const result = await rig.run(prompt);
 
-  assert.ok(result.toLowerCase().includes('$blue$'));
+  const foundToolCall = await rig.waitForToolCall('save_memory');
+
+  // Add debugging information
+  if (!foundToolCall || !result.toLowerCase().includes('blue')) {
+    const allTools = printDebugInfo(rig, result, {
+      'Found tool call': foundToolCall,
+      'Contains blue': result.toLowerCase().includes('blue'),
+    });
+
+    console.error(
+      'Memory tool calls:',
+      allTools
+        .filter((t) => t.toolRequest.name === 'save_memory')
+        .map((t) => t.toolRequest.args),
+    );
+  }
+
+  assert.ok(foundToolCall, 'Expected to find a save_memory tool call');
+
+  // Validate model output - will throw if no output, warn if missing expected content
+  validateModelOutput(result, 'blue', 'Save memory test');
 });

integration-tests/simple-mcp-server.test.js

@@ -4,67 +4,208 @@
  * SPDX-License-Identifier: Apache-2.0
  */
 
-import { test, describe, before, after } from 'node:test';
+/**
+ * This test verifies MCP (Model Context Protocol) server integration.
+ * It uses a minimal MCP server implementation that doesn't require
+ * external dependencies, making it compatible with Docker sandbox mode.
+ */
+
+import { test, describe, before } from 'node:test';
 import { strict as assert } from 'node:assert';
-import { TestRig } from './test-helper.js';
-import { spawn } from 'child_process';
+import { TestRig, validateModelOutput } from './test-helper.js';
 import { join } from 'path';
 import { fileURLToPath } from 'url';
-import { writeFileSync, unlinkSync } from 'fs';
+import { writeFileSync } from 'fs';
 
 const __dirname = fileURLToPath(new URL('.', import.meta.url));
-const serverScriptPath = join(__dirname, './temp-server.js');
 
-const serverScript = `
-import { McpServer } from '@modelcontextprotocol/sdk/server/mcp.js';
-import { StdioServerTransport } from '@modelcontextprotocol/sdk/server/stdio.js';
-import { z } from 'zod';
+// Create a minimal MCP server that doesn't require external dependencies
+// This implements the MCP protocol directly using Node.js built-ins
+const serverScript = `#!/usr/bin/env node
+/**
+ * @license
+ * Copyright 2025 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
 
-const server = new McpServer({
-  name: 'addition-server',
-  version: '1.0.0',
+const readline = require('readline');
+const fs = require('fs');
+
+// Debug logging to stderr (only when MCP_DEBUG or VERBOSE is set)
+const debugEnabled = process.env.MCP_DEBUG === 'true' || process.env.VERBOSE === 'true';
+function debug(msg) {
+  if (debugEnabled) {
+    fs.writeSync(2, \`[MCP-DEBUG] \${msg}\\n\`);
+  }
+}
+
+debug('MCP server starting...');
+
+// Simple JSON-RPC implementation for MCP
+class SimpleJSONRPC {
+  constructor() {
+    this.handlers = new Map();
+    this.rl = readline.createInterface({
+      input: process.stdin,
+      output: process.stdout,
+      terminal: false
+    });
+    
+    this.rl.on('line', (line) => {
+      debug(\`Received line: \${line}\`);
+      try {
+        const message = JSON.parse(line);
+        debug(\`Parsed message: \${JSON.stringify(message)}\`);
+        this.handleMessage(message);
+      } catch (e) {
+        debug(\`Parse error: \${e.message}\`);
+      }
+    });
+  }
+  
+  send(message) {
+    const msgStr = JSON.stringify(message);
+    debug(\`Sending message: \${msgStr}\`);
+    process.stdout.write(msgStr + '\\n');
+  }
+  
+  async handleMessage(message) {
+    if (message.method && this.handlers.has(message.method)) {
+      try {
+        const result = await this.handlers.get(message.method)(message.params || {});
+        if (message.id !== undefined) {
+          this.send({
+            jsonrpc: '2.0',
+            id: message.id,
+            result
+          });
+        }
+      } catch (error) {
+        if (message.id !== undefined) {
+          this.send({
+            jsonrpc: '2.0',
+            id: message.id,
+            error: {
+              code: -32603,
+              message: error.message
+            }
+          });
+        }
+      }
+    } else if (message.id !== undefined) {
+      this.send({
+        jsonrpc: '2.0',
+        id: message.id,
+        error: {
+          code: -32601,
+          message: 'Method not found'
+        }
+      });
+    }
+  }
+  
+  on(method, handler) {
+    this.handlers.set(method, handler);
+  }
+}
+
+// Create MCP server
+const rpc = new SimpleJSONRPC();
+
+// Handle initialize
+rpc.on('initialize', async (params) => {
+  debug('Handling initialize request');
+  return {
+    protocolVersion: '2024-11-05',
+    capabilities: {
+      tools: {}
+    },
+    serverInfo: {
+      name: 'addition-server',
+      version: '1.0.0'
+    }
+  };
 });
 
-server.registerTool(
-  'add',
-  {
-    title: 'Addition Tool',
-    description: 'Add two numbers',
-    inputSchema: { a: z.number(), b: z.number() },
-  },
-  async ({ a, b }) => ({
-    content: [{ type: 'text', text: String(a + b) }],
-  }),
-);
+// Handle tools/list
+rpc.on('tools/list', async () => {
+  debug('Handling tools/list request');
+  return {
+    tools: [{
+      name: 'add',
+      description: 'Add two numbers',
+      inputSchema: {
+        type: 'object',
+        properties: {
+          a: { type: 'number', description: 'First number' },
+          b: { type: 'number', description: 'Second number' }
+        },
+        required: ['a', 'b']
+      }
+    }]
+  };
+});
 
-const transport = new StdioServerTransport();
-await server.connect(transport);
+// Handle tools/call
+rpc.on('tools/call', async (params) => {
+  debug(\`Handling tools/call request for tool: \${params.name}\`);
+  if (params.name === 'add') {
+    const { a, b } = params.arguments;
+    return {
+      content: [{
+        type: 'text',
+        text: String(a + b)
+      }]
+    };
+  }
+  throw new Error('Unknown tool: ' + params.name);
+});
+
+// Send initialization notification
+rpc.send({
+  jsonrpc: '2.0',
+  method: 'initialized'
+});
 `;
 
 describe('simple-mcp-server', () => {
   const rig = new TestRig();
-  let child;
 
-  before(() => {
-    writeFileSync(serverScriptPath, serverScript);
-    child = spawn('node', [serverScriptPath], {
-      stdio: ['pipe', 'pipe', 'pipe'],
+  before(async () => {
+    // Setup test directory with MCP server configuration
+    await rig.setup('simple-mcp-server', {
+      settings: {
+        mcpServers: {
+          'addition-server': {
+            command: 'node',
+            args: ['mcp-server.cjs'],
+          },
+        },
+      },
     });
-    child.stderr.on('data', (data) => {
-      console.error(`stderr: ${data}`);
-    });
-    // Wait for the server to be ready
-    return new Promise((resolve) => setTimeout(resolve, 2000));
+
+    // Create server script in the test directory
+    const testServerPath = join(rig.testDir, 'mcp-server.cjs');
+    writeFileSync(testServerPath, serverScript);
+
+    // Make the script executable (though running with 'node' should work anyway)
+    if (process.platform !== 'win32') {
+      const { chmodSync } = await import('fs');
+      chmodSync(testServerPath, 0o755);
+    }
   });
 
-  after(() => {
-    child.kill();
-    unlinkSync(serverScriptPath);
-  });
+  test('should add two numbers', async () => {
+    // Test directory is already set up in before hook
+    // Just run the command - MCP server config is in settings.json
+    const output = await rig.run('add 5 and 10');
 
-  test('should add two numbers', () => {
-    rig.setup('should add two numbers');
-    const output = rig.run('add 5 and 10');
-    assert.ok(output.includes('15'));
+    const foundToolCall = await rig.waitForToolCall('add');
+
+    assert.ok(foundToolCall, 'Expected to find an add tool call');
+
+    // Validate model output - will throw if no output, fail if missing expected content
+    validateModelOutput(output, '15', 'MCP server test');
+    assert.ok(output.includes('15'), 'Expected output to contain the sum (15)');
   });
 });

integration-tests/test-helper.js

@@ -4,11 +4,13 @@
  * SPDX-License-Identifier: Apache-2.0
  */
 
-import { execSync } from 'child_process';
+import { execSync, spawn } from 'child_process';
+import { parse } from 'shell-quote';
 import { mkdirSync, writeFileSync, readFileSync } from 'fs';
 import { join, dirname } from 'path';
 import { fileURLToPath } from 'url';
 import { env } from 'process';
+import { fileExists } from '../scripts/telemetry_utils.js';
 
 const __dirname = dirname(fileURLToPath(import.meta.url));
 
@@ -19,17 +21,129 @@ function sanitizeTestName(name) {
     .replace(/-+/g, '-');
 }
 
+// Helper to create detailed error messages
+export function createToolCallErrorMessage(expectedTools, foundTools, result) {
+  const expectedStr = Array.isArray(expectedTools)
+    ? expectedTools.join(' or ')
+    : expectedTools;
+  return (
+    `Expected to find ${expectedStr} tool call(s). ` +
+    `Found: ${foundTools.length > 0 ? foundTools.join(', ') : 'none'}. ` +
+    `Output preview: ${result ? result.substring(0, 200) + '...' : 'no output'}`
+  );
+}
+
+// Helper to print debug information when tests fail
+export function printDebugInfo(rig, result, context = {}) {
+  console.error('Test failed - Debug info:');
+  console.error('Result length:', result.length);
+  console.error('Result (first 500 chars):', result.substring(0, 500));
+  console.error(
+    'Result (last 500 chars):',
+    result.substring(result.length - 500),
+  );
+
+  // Print any additional context provided
+  Object.entries(context).forEach(([key, value]) => {
+    console.error(`${key}:`, value);
+  });
+
+  // Check what tools were actually called
+  const allTools = rig.readToolLogs();
+  console.error(
+    'All tool calls found:',
+    allTools.map((t) => t.toolRequest.name),
+  );
+
+  return allTools;
+}
+
+// Helper to validate model output and warn about unexpected content
+export function validateModelOutput(
+  result,
+  expectedContent = null,
+  testName = '',
+) {
+  // First, check if there's any output at all (this should fail the test if missing)
+  if (!result || result.trim().length === 0) {
+    throw new Error('Expected LLM to return some output');
+  }
+
+  // If expectedContent is provided, check for it and warn if missing
+  if (expectedContent) {
+    const contents = Array.isArray(expectedContent)
+      ? expectedContent
+      : [expectedContent];
+    const missingContent = contents.filter((content) => {
+      if (typeof content === 'string') {
+        return !result.toLowerCase().includes(content.toLowerCase());
+      } else if (content instanceof RegExp) {
+        return !content.test(result);
+      }
+      return false;
+    });
+
+    if (missingContent.length > 0) {
+      console.warn(
+        `Warning: LLM did not include expected content in response: ${missingContent.join(', ')}.`,
+        'This is not ideal but not a test failure.',
+      );
+      console.warn(
+        'The tool was called successfully, which is the main requirement.',
+      );
+      return false;
+    } else if (process.env.VERBOSE === 'true') {
+      console.log(`${testName}: Model output validated successfully.`);
+    }
+    return true;
+  }
+
+  return true;
+}
+
 export class TestRig {
   constructor() {
     this.bundlePath = join(__dirname, '..', 'bundle/gemini.js');
     this.testDir = null;
   }
 
-  setup(testName) {
+  // Get timeout based on environment
+  getDefaultTimeout() {
+    if (env.CI) return 60000; // 1 minute in CI
+    if (env.GEMINI_SANDBOX) return 30000; // 30s in containers
+    return 15000; // 15s locally
+  }
+
+  setup(testName, options = {}) {
     this.testName = testName;
     const sanitizedName = sanitizeTestName(testName);
     this.testDir = join(env.INTEGRATION_TEST_FILE_DIR, sanitizedName);
     mkdirSync(this.testDir, { recursive: true });
+
+    // Create a settings file to point the CLI to the local collector
+    const geminiDir = join(this.testDir, '.qwen');
+    mkdirSync(geminiDir, { recursive: true });
+    // In sandbox mode, use an absolute path for telemetry inside the container
+    // The container mounts the test directory at the same path as the host
+    const telemetryPath =
+      env.GEMINI_SANDBOX && env.GEMINI_SANDBOX !== 'false'
+        ? join(this.testDir, 'telemetry.log') // Absolute path in test directory
+        : env.TELEMETRY_LOG_FILE; // Absolute path for non-sandbox
+
+    const settings = {
+      telemetry: {
+        enabled: true,
+        target: 'local',
+        otlpEndpoint: '',
+        outfile: telemetryPath,
+      },
+      sandbox: env.GEMINI_SANDBOX !== 'false' ? env.GEMINI_SANDBOX : false,
+      ...options.settings, // Allow tests to override/add settings
+    };
+    writeFileSync(
+      join(geminiDir, 'settings.json'),
+      JSON.stringify(settings, null, 2),
+    );
   }
 
   createFile(fileName, content) {
@@ -39,7 +153,7 @@ export class TestRig {
   }
 
   mkdir(dir) {
-    mkdirSync(join(this.testDir, dir));
+    mkdirSync(join(this.testDir, dir), { recursive: true });
   }
 
   sync() {
@@ -70,19 +184,88 @@ export class TestRig {
 
     command += ` ${args.join(' ')}`;
 
-    const output = execSync(command, execOptions);
+    const commandArgs = parse(command);
+    const node = commandArgs.shift();
 
-    if (env.KEEP_OUTPUT === 'true' || env.VERBOSE === 'true') {
-      const testId = `${env.TEST_FILE_NAME.replace(
-        '.test.js',
-        '',
-      )}:${this.testName.replace(/ /g, '-')}`;
-      console.log(`--- TEST: ${testId} ---`);
-      console.log(output);
-      console.log(`--- END TEST: ${testId} ---`);
+    const child = spawn(node, commandArgs, {
+      cwd: this.testDir,
+      stdio: 'pipe',
+    });
+
+    let stdout = '';
+    let stderr = '';
+
+    // Handle stdin if provided
+    if (execOptions.input) {
+      child.stdin.write(execOptions.input);
+      child.stdin.end();
     }
 
-    return output;
+    child.stdout.on('data', (data) => {
+      stdout += data;
+      if (env.KEEP_OUTPUT === 'true' || env.VERBOSE === 'true') {
+        process.stdout.write(data);
+      }
+    });
+
+    child.stderr.on('data', (data) => {
+      stderr += data;
+      if (env.KEEP_OUTPUT === 'true' || env.VERBOSE === 'true') {
+        process.stderr.write(data);
+      }
+    });
+
+    const promise = new Promise((resolve, reject) => {
+      child.on('close', (code) => {
+        if (code === 0) {
+          // Store the raw stdout for Podman telemetry parsing
+          this._lastRunStdout = stdout;
+
+          // Filter out telemetry output when running with Podman
+          // Podman seems to output telemetry to stdout even when writing to file
+          let result = stdout;
+          if (env.GEMINI_SANDBOX === 'podman') {
+            // Remove telemetry JSON objects from output
+            // They are multi-line JSON objects that start with { and contain telemetry fields
+            const lines = result.split('\n');
+            const filteredLines = [];
+            let inTelemetryObject = false;
+            let braceDepth = 0;
+
+            for (const line of lines) {
+              if (!inTelemetryObject && line.trim() === '{') {
+                // Check if this might be start of telemetry object
+                inTelemetryObject = true;
+                braceDepth = 1;
+              } else if (inTelemetryObject) {
+                // Count braces to track nesting
+                for (const char of line) {
+                  if (char === '{') braceDepth++;
+                  else if (char === '}') braceDepth--;
+                }
+
+                // Check if we've closed all braces
+                if (braceDepth === 0) {
+                  inTelemetryObject = false;
+                  // Skip this line (the closing brace)
+                  continue;
+                }
+              } else {
+                // Not in telemetry object, keep the line
+                filteredLines.push(line);
+              }
+            }
+
+            result = filteredLines.join('\n');
+          }
+          resolve(result);
+        } else {
+          reject(new Error(`Process exited with code ${code}:\n${stderr}`));
+        }
+      });
+    });
+
+    return promise;
   }
 
   readFile(fileName) {
@@ -98,4 +281,312 @@ export class TestRig {
     }
     return content;
   }
+
+  async cleanup() {
+    // Clean up test directory
+    if (this.testDir && !env.KEEP_OUTPUT) {
+      try {
+        execSync(`rm -rf ${this.testDir}`);
+      } catch (error) {
+        // Ignore cleanup errors
+        if (env.VERBOSE === 'true') {
+          console.warn('Cleanup warning:', error.message);
+        }
+      }
+    }
+  }
+
+  async waitForTelemetryReady() {
+    // In sandbox mode, telemetry is written to a relative path in the test directory
+    const logFilePath =
+      env.GEMINI_SANDBOX && env.GEMINI_SANDBOX !== 'false'
+        ? join(this.testDir, 'telemetry.log')
+        : env.TELEMETRY_LOG_FILE;
+
+    if (!logFilePath) return;
+
+    // Wait for telemetry file to exist and have content
+    await this.poll(
+      () => {
+        if (!fileExists(logFilePath)) return false;
+        try {
+          const content = readFileSync(logFilePath, 'utf-8');
+          // Check if file has meaningful content (at least one complete JSON object)
+          return content.includes('"event.name"');
+        } catch (_e) {
+          return false;
+        }
+      },
+      2000, // 2 seconds max - reduced since telemetry should flush on exit now
+      100, // check every 100ms
+    );
+  }
+
+  async waitForToolCall(toolName, timeout) {
+    // Use environment-specific timeout
+    if (!timeout) {
+      timeout = this.getDefaultTimeout();
+    }
+
+    // Wait for telemetry to be ready before polling for tool calls
+    await this.waitForTelemetryReady();
+
+    return this.poll(
+      () => {
+        const toolLogs = this.readToolLogs();
+        return toolLogs.some((log) => log.toolRequest.name === toolName);
+      },
+      timeout,
+      100,
+    );
+  }
+
+  async waitForAnyToolCall(toolNames, timeout) {
+    // Use environment-specific timeout
+    if (!timeout) {
+      timeout = this.getDefaultTimeout();
+    }
+
+    // Wait for telemetry to be ready before polling for tool calls
+    await this.waitForTelemetryReady();
+
+    return this.poll(
+      () => {
+        const toolLogs = this.readToolLogs();
+        return toolNames.some((name) =>
+          toolLogs.some((log) => log.toolRequest.name === name),
+        );
+      },
+      timeout,
+      100,
+    );
+  }
+
+  async poll(predicate, timeout, interval) {
+    const startTime = Date.now();
+    let attempts = 0;
+    while (Date.now() - startTime < timeout) {
+      attempts++;
+      const result = predicate();
+      if (env.VERBOSE === 'true' && attempts % 5 === 0) {
+        console.log(
+          `Poll attempt ${attempts}: ${result ? 'success' : 'waiting...'}`,
+        );
+      }
+      if (result) {
+        return true;
+      }
+      await new Promise((resolve) => setTimeout(resolve, interval));
+    }
+    if (env.VERBOSE === 'true') {
+      console.log(`Poll timed out after ${attempts} attempts`);
+    }
+    return false;
+  }
+
+  _parseToolLogsFromStdout(stdout) {
+    const logs = [];
+
+    // The console output from Podman is JavaScript object notation, not JSON
+    // Look for tool call events in the output
+    // Updated regex to handle tool names with hyphens and underscores
+    const toolCallPattern =
+      /body:\s*'Tool call:\s*([\w-]+)\..*?Success:\s*(\w+)\..*?Duration:\s*(\d+)ms\.'/g;
+    const matches = [...stdout.matchAll(toolCallPattern)];
+
+    for (const match of matches) {
+      const toolName = match[1];
+      const success = match[2] === 'true';
+      const duration = parseInt(match[3], 10);
+
+      // Try to find function_args nearby
+      const matchIndex = match.index || 0;
+      const contextStart = Math.max(0, matchIndex - 500);
+      const contextEnd = Math.min(stdout.length, matchIndex + 500);
+      const context = stdout.substring(contextStart, contextEnd);
+
+      // Look for function_args in the context
+      let args = '{}';
+      const argsMatch = context.match(/function_args:\s*'([^']+)'/);
+      if (argsMatch) {
+        args = argsMatch[1];
+      }
+
+      // Also try to find function_name to double-check
+      // Updated regex to handle tool names with hyphens and underscores
+      const nameMatch = context.match(/function_name:\s*'([\w-]+)'/);
+      const actualToolName = nameMatch ? nameMatch[1] : toolName;
+
+      logs.push({
+        timestamp: Date.now(),
+        toolRequest: {
+          name: actualToolName,
+          args: args,
+          success: success,
+          duration_ms: duration,
+        },
+      });
+    }
+
+    // If no matches found with the simple pattern, try the JSON parsing approach
+    // in case the format changes
+    if (logs.length === 0) {
+      const lines = stdout.split('\n');
+      let currentObject = '';
+      let inObject = false;
+      let braceDepth = 0;
+
+      for (const line of lines) {
+        if (!inObject && line.trim() === '{') {
+          inObject = true;
+          braceDepth = 1;
+          currentObject = line + '\n';
+        } else if (inObject) {
+          currentObject += line + '\n';
+
+          // Count braces
+          for (const char of line) {
+            if (char === '{') braceDepth++;
+            else if (char === '}') braceDepth--;
+          }
+
+          // If we've closed all braces, try to parse the object
+          if (braceDepth === 0) {
+            inObject = false;
+            try {
+              const obj = JSON.parse(currentObject);
+
+              // Check for tool call in different formats
+              if (
+                obj.body &&
+                obj.body.includes('Tool call:') &&
+                obj.attributes
+              ) {
+                const bodyMatch = obj.body.match(/Tool call: (\w+)\./);
+                if (bodyMatch) {
+                  logs.push({
+                    timestamp: obj.timestamp || Date.now(),
+                    toolRequest: {
+                      name: bodyMatch[1],
+                      args: obj.attributes.function_args || '{}',
+                      success: obj.attributes.success !== false,
+                      duration_ms: obj.attributes.duration_ms || 0,
+                    },
+                  });
+                }
+              } else if (
+                obj.attributes &&
+                obj.attributes['event.name'] === 'gemini_cli.tool_call'
+              ) {
+                logs.push({
+                  timestamp: obj.attributes['event.timestamp'],
+                  toolRequest: {
+                    name: obj.attributes.function_name,
+                    args: obj.attributes.function_args,
+                    success: obj.attributes.success,
+                    duration_ms: obj.attributes.duration_ms,
+                  },
+                });
+              }
+            } catch (_e) {
+              // Not valid JSON
+            }
+            currentObject = '';
+          }
+        }
+      }
+    }
+
+    return logs;
+  }
+
+  readToolLogs() {
+    // For Podman, first check if telemetry file exists and has content
+    // If not, fall back to parsing from stdout
+    if (env.GEMINI_SANDBOX === 'podman') {
+      // Try reading from file first
+      const logFilePath = join(this.testDir, 'telemetry.log');
+
+      if (fileExists(logFilePath)) {
+        try {
+          const content = readFileSync(logFilePath, 'utf-8');
+          if (content && content.includes('"event.name"')) {
+            // File has content, use normal file parsing
+            // Continue to the normal file parsing logic below
+          } else if (this._lastRunStdout) {
+            // File exists but is empty or doesn't have events, parse from stdout
+            return this._parseToolLogsFromStdout(this._lastRunStdout);
+          }
+        } catch (_e) {
+          // Error reading file, fall back to stdout
+          if (this._lastRunStdout) {
+            return this._parseToolLogsFromStdout(this._lastRunStdout);
+          }
+        }
+      } else if (this._lastRunStdout) {
+        // No file exists, parse from stdout
+        return this._parseToolLogsFromStdout(this._lastRunStdout);
+      }
+    }
+
+    // In sandbox mode, telemetry is written to a relative path in the test directory
+    const logFilePath =
+      env.GEMINI_SANDBOX && env.GEMINI_SANDBOX !== 'false'
+        ? join(this.testDir, 'telemetry.log')
+        : env.TELEMETRY_LOG_FILE;
+
+    if (!logFilePath) {
+      console.warn(`TELEMETRY_LOG_FILE environment variable not set`);
+      return [];
+    }
+
+    // Check if file exists, if not return empty array (file might not be created yet)
+    if (!fileExists(logFilePath)) {
+      return [];
+    }
+
+    const content = readFileSync(logFilePath, 'utf-8');
+
+    // Split the content into individual JSON objects
+    // They are separated by "}\n{" pattern
+    const jsonObjects = content
+      .split(/}\s*\n\s*{/)
+      .map((obj, index, array) => {
+        // Add back the braces we removed during split
+        if (index > 0) obj = '{' + obj;
+        if (index < array.length - 1) obj = obj + '}';
+        return obj.trim();
+      })
+      .filter((obj) => obj);
+
+    const logs = [];
+
+    for (const jsonStr of jsonObjects) {
+      try {
+        const logData = JSON.parse(jsonStr);
+        // Look for tool call logs
+        if (
+          logData.attributes &&
+          logData.attributes['event.name'] === 'qwen-code.tool_call'
+        ) {
+          const toolName = logData.attributes.function_name;
+          logs.push({
+            toolRequest: {
+              name: toolName,
+              args: logData.attributes.function_args,
+              success: logData.attributes.success,
+              duration_ms: logData.attributes.duration_ms,
+            },
+          });
+        }
+      } catch (_e) {
+        // Skip objects that aren't valid JSON
+        if (env.VERBOSE === 'true') {
+          console.error('Failed to parse telemetry object:', _e.message);
+        }
+      }
+    }
+
+    return logs;
+  }
 }

integration-tests/web_search.test.js

@@ -0,0 +1,78 @@
+/**
+ * @license
+ * Copyright 2025 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+import { test } from 'node:test';
+import { strict as assert } from 'assert';
+import { TestRig, printDebugInfo, validateModelOutput } from './test-helper.js';
+
+test('should be able to search the web', async () => {
+  // Skip if Tavily key is not configured
+  if (!process.env.TAVILY_API_KEY) {
+    console.warn('Skipping web search test: TAVILY_API_KEY not set');
+    return;
+  }
+  const rig = new TestRig();
+  await rig.setup('should be able to search the web');
+
+  let result;
+  try {
+    result = await rig.run(`what is the weather in London`);
+  } catch (error) {
+    // Network errors can occur in CI environments
+    if (
+      error.message.includes('network') ||
+      error.message.includes('timeout')
+    ) {
+      console.warn('Skipping test due to network error:', error.message);
+      return; // Skip the test
+    }
+    throw error; // Re-throw if not a network error
+  }
+
+  const foundToolCall = await rig.waitForToolCall('web_search');
+
+  // Add debugging information
+  if (!foundToolCall) {
+    const allTools = printDebugInfo(rig, result);
+
+    // Check if the tool call failed due to network issues
+    const failedSearchCalls = allTools.filter(
+      (t) => t.toolRequest.name === 'web_search' && !t.toolRequest.success,
+    );
+    if (failedSearchCalls.length > 0) {
+      console.warn(
+        'web_search tool was called but failed, possibly due to network issues',
+      );
+      console.warn(
+        'Failed calls:',
+        failedSearchCalls.map((t) => t.toolRequest.args),
+      );
+      return; // Skip the test if network issues
+    }
+  }
+
+  assert.ok(foundToolCall, 'Expected to find a call to web_search');
+
+  // Validate model output - will throw if no output, warn if missing expected content
+  const hasExpectedContent = validateModelOutput(
+    result,
+    ['weather', 'london'],
+    'Web search test',
+  );
+
+  // If content was missing, log the search queries used
+  if (!hasExpectedContent) {
+    const searchCalls = rig
+      .readToolLogs()
+      .filter((t) => t.toolRequest.name === 'web_search');
+    if (searchCalls.length > 0) {
+      console.warn(
+        'Search queries used:',
+        searchCalls.map((t) => t.toolRequest.args),
+      );
+    }
+  }
+});

integration-tests/write_file.test.js

@@ -6,16 +6,63 @@
 
 import { test } from 'node:test';
 import { strict as assert } from 'assert';
-import { TestRig } from './test-helper.js';
+import {
+  TestRig,
+  createToolCallErrorMessage,
+  printDebugInfo,
+  validateModelOutput,
+} from './test-helper.js';
 
-test('should be able to write a file', async (t) => {
+test('should be able to write a file', async () => {
   const rig = new TestRig();
-  rig.setup(t.name);
+  await rig.setup('should be able to write a file');
   const prompt = `show me an example of using the write tool. put a dad joke in dad.txt`;
 
-  await rig.run(prompt);
+  const result = await rig.run(prompt);
+
+  const foundToolCall = await rig.waitForToolCall('write_file');
+
+  // Add debugging information
+  if (!foundToolCall) {
+    printDebugInfo(rig, result);
+  }
+
+  const allTools = rig.readToolLogs();
+  assert.ok(
+    foundToolCall,
+    createToolCallErrorMessage(
+      'write_file',
+      allTools.map((t) => t.toolRequest.name),
+      result,
+    ),
+  );
+
+  // Validate model output - will throw if no output, warn if missing expected content
+  validateModelOutput(result, 'dad.txt', 'Write file test');
+
   const newFilePath = 'dad.txt';
 
   const newFileContent = rig.readFile(newFilePath);
-  assert.notEqual(newFileContent, '');
+
+  // Add debugging for file content
+  if (newFileContent === '') {
+    console.error('File was created but is empty');
+    console.error(
+      'Tool calls:',
+      rig.readToolLogs().map((t) => ({
+        name: t.toolRequest.name,
+        args: t.toolRequest.args,
+      })),
+    );
+  }
+
+  assert.notEqual(newFileContent, '', 'Expected file to have content');
+
+  // Log success info if verbose
+  if (process.env.VERBOSE === 'true') {
+    console.log(
+      'File created successfully with content:',
+      newFileContent.substring(0, 100) + '...',
+    );
+  }
 });

package.json

@@ -1,6 +1,6 @@
 {
   "name": "@qwen-code/qwen-code",
-  "version": "0.0.3",
+  "version": "0.0.8-nightly.3",
   "engines": {
     "node": ">=20.0.0"
   },
@@ -13,7 +13,7 @@
     "url": "git+https://github.com/QwenLM/qwen-code.git"
   },
   "config": {
-    "sandboxImageUri": "ghcr.io/qwenlm/qwen-code:0.0.3"
+    "sandboxImageUri": "ghcr.io/qwenlm/qwen-code:0.0.8-nightly.3"
   },
   "scripts": {
     "start": "node scripts/start.js",
@@ -57,10 +57,12 @@
     "LICENSE"
   ],
   "devDependencies": {
+    "@types/marked": "^5.0.2",
     "@types/micromatch": "^4.0.9",
     "@types/mime-types": "^3.0.1",
     "@types/minimatch": "^5.1.2",
     "@types/mock-fs": "^4.13.4",
+    "@types/qrcode-terminal": "^0.12.2",
     "@types/shell-quote": "^1.7.5",
     "@types/uuid": "^10.0.0",
     "@vitest/coverage-v8": "^3.1.1",
@@ -84,8 +86,5 @@
     "typescript-eslint": "^8.30.1",
     "vitest": "^3.2.4",
     "yargs": "^17.7.2"
-  },
-  "dependencies": {
-    "tiktoken": "^1.0.21"
   }
 }

packages/cli/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@qwen-code/qwen-code",
-  "version": "0.0.3",
+  "version": "0.0.8-nightly.3",
   "description": "Qwen Code",
   "repository": {
     "type": "git",
@@ -25,12 +25,12 @@
     "dist"
   ],
   "config": {
-    "sandboxImageUri": "ghcr.io/qwenlm/qwen-code:0.0.3"
+    "sandboxImageUri": "ghcr.io/qwenlm/qwen-code:0.0.8-nightly.3"
   },
   "dependencies": {
-    "@qwen-code/qwen-code-core": "file:../core",
     "@google/genai": "1.9.0",
     "@iarna/toml": "^2.2.5",
+    "@qwen-code/qwen-code-core": "file:../core",
     "@types/update-notifier": "^6.0.8",
     "command-exists": "^1.2.9",
     "diff": "^7.0.0",
@@ -46,12 +46,14 @@
     "lowlight": "^3.3.0",
     "mime-types": "^3.0.1",
     "open": "^10.1.2",
+    "qrcode-terminal": "^0.12.0",
     "react": "^19.1.0",
     "read-package-up": "^11.0.0",
     "shell-quote": "^1.8.3",
     "string-width": "^7.1.0",
     "strip-ansi": "^7.1.0",
     "strip-json-comments": "^3.1.1",
+    "tiktoken": "^1.0.21",
     "update-notifier": "^7.3.1",
     "yargs": "^17.7.2",
     "zod": "^3.23.8"
@@ -73,7 +75,8 @@
     "pretty-format": "^30.0.2",
     "react-dom": "^19.1.0",
     "typescript": "^5.3.3",
-    "vitest": "^3.1.1"
+    "vitest": "^3.1.1",
+    "@qwen-code/qwen-code-test-utils": "file:../test-utils"
   },
   "engines": {
     "node": ">=20"

packages/cli/src/config/auth.ts

@@ -45,6 +45,12 @@ export const validateAuthMethod = (authMethod: string): string | null => {
     return null;
   }
 
+  if (authMethod === AuthType.QWEN_OAUTH) {
+    // Qwen OAuth doesn't require any environment variables for basic setup
+    // The OAuth flow will handle authentication
+    return null;
+  }
+
   return 'Invalid auth method selected.';
 };
 

packages/cli/src/config/config.integration.test.ts

@@ -37,7 +37,7 @@ describe('Configuration Integration Tests', () => {
   let originalEnv: NodeJS.ProcessEnv;
 
   beforeEach(() => {
-    tempDir = fs.mkdtempSync(path.join(tmpdir(), 'gemini-cli-test-'));
+    tempDir = fs.mkdtempSync(path.join(tmpdir(), 'qwen-code-test-'));
     originalEnv = { ...process.env };
     process.env.GEMINI_API_KEY = 'test-api-key';
     vi.clearAllMocks();

packages/cli/src/config/config.test.ts

@@ -6,7 +6,9 @@
 
 import { describe, it, expect, vi, beforeEach, afterEach } from 'vitest';
 import * as os from 'os';
-import { loadCliConfig, parseArguments, CliArgs } from './config.js';
+import * as fs from 'fs';
+import * as path from 'path';
+import { loadCliConfig, parseArguments } from './config.js';
 import { Settings } from './settings.js';
 import { Extension } from './extension.js';
 import * as ServerConfig from '@qwen-code/qwen-code-core';
@@ -35,9 +37,16 @@ vi.mock('@qwen-code/qwen-code-core', async () => {
   );
   return {
     ...actualServer,
+    IdeClient: {
+      getInstance: vi.fn().mockReturnValue({
+        getConnectionStatus: vi.fn(),
+        initialize: vi.fn(),
+        shutdown: vi.fn(),
+      }),
+    },
     loadEnvironment: vi.fn(),
     loadServerHierarchicalMemory: vi.fn(
-      (cwd, debug, fileService, extensionPaths, _maxDirs) =>
+      (cwd, dirs, debug, fileService, extensionPaths, _maxDirs) =>
         Promise.resolve({
           memoryContent: extensionPaths?.join(',') || '',
           fileCount: extensionPaths?.length || 0,
@@ -492,6 +501,7 @@ describe('Hierarchical Memory Loading (config.ts) - Placeholder Suite', () => {
     await loadCliConfig(settings, extensions, 'session-id', argv);
     expect(ServerConfig.loadServerHierarchicalMemory).toHaveBeenCalledWith(
       expect.any(String),
+      [],
       false,
       expect.any(Object),
       [
@@ -499,6 +509,7 @@ describe('Hierarchical Memory Loading (config.ts) - Placeholder Suite', () => {
         '/path/to/ext3/context1.md',
         '/path/to/ext3/context2.md',
       ],
+      'tree',
       {
         respectGitIgnore: false,
         respectGeminiIgnore: true,
@@ -983,7 +994,69 @@ describe('loadCliConfig extensions', () => {
   });
 });
 
-describe('loadCliConfig ideMode', () => {
+describe('loadCliConfig model selection', () => {
+  it('selects a model from settings.json if provided', async () => {
+    process.argv = ['node', 'script.js'];
+    const argv = await parseArguments();
+    const config = await loadCliConfig(
+      {
+        model: 'qwen3-coder-plus',
+      },
+      [],
+      'test-session',
+      argv,
+    );
+
+    expect(config.getModel()).toBe('qwen3-coder-plus');
+  });
+
+  it('uses the default gemini model if nothing is set', async () => {
+    process.argv = ['node', 'script.js']; // No model set.
+    const argv = await parseArguments();
+    const config = await loadCliConfig(
+      {
+        // No model set.
+      },
+      [],
+      'test-session',
+      argv,
+    );
+
+    expect(config.getModel()).toBe('qwen3-coder-plus');
+  });
+
+  it('always prefers model from argvs', async () => {
+    process.argv = ['node', 'script.js', '--model', 'qwen3-coder-plus'];
+    const argv = await parseArguments();
+    const config = await loadCliConfig(
+      {
+        model: 'qwen3-coder-plus',
+      },
+      [],
+      'test-session',
+      argv,
+    );
+
+    expect(config.getModel()).toBe('qwen3-coder-plus');
+  });
+
+  it('selects the model from argvs if provided', async () => {
+    process.argv = ['node', 'script.js', '--model', 'qwen3-coder-plus'];
+    const argv = await parseArguments();
+    const config = await loadCliConfig(
+      {
+        // No model provided via settings.
+      },
+      [],
+      'test-session',
+      argv,
+    );
+
+    expect(config.getModel()).toBe('qwen3-coder-plus');
+  });
+});
+
+describe('loadCliConfig ideModeFeature', () => {
   const originalArgv = process.argv;
   const originalEnv = { ...process.env };
 
@@ -991,8 +1064,6 @@ describe('loadCliConfig ideMode', () => {
     vi.resetAllMocks();
     vi.mocked(os.homedir).mockReturnValue('/mock/home/user');
     process.env.GEMINI_API_KEY = 'test-api-key';
-    // Explicitly delete TERM_PROGRAM and SANDBOX before each test
-    delete process.env.TERM_PROGRAM;
     delete process.env.SANDBOX;
     delete process.env.GEMINI_CLI_IDE_SERVER_PORT;
   });
@@ -1008,81 +1079,88 @@ describe('loadCliConfig ideMode', () => {
     const settings: Settings = {};
     const argv = await parseArguments();
     const config = await loadCliConfig(settings, [], 'test-session', argv);
-    expect(config.getIdeMode()).toBe(false);
-  });
-
-  it('should be false if --ide-mode is true but TERM_PROGRAM is not vscode', async () => {
-    process.argv = ['node', 'script.js', '--ide-mode'];
-    const settings: Settings = {};
-    const argv = await parseArguments();
-    const config = await loadCliConfig(settings, [], 'test-session', argv);
-    expect(config.getIdeMode()).toBe(false);
-  });
-
-  it('should be false if settings.ideMode is true but TERM_PROGRAM is not vscode', async () => {
-    process.argv = ['node', 'script.js'];
-    const argv = await parseArguments();
-    const settings: Settings = { ideMode: true };
-    const config = await loadCliConfig(settings, [], 'test-session', argv);
-    expect(config.getIdeMode()).toBe(false);
-  });
-
-  it('should be true when --ide-mode is set and TERM_PROGRAM is vscode', async () => {
-    process.argv = ['node', 'script.js', '--ide-mode'];
-    const argv = await parseArguments();
-    process.env.TERM_PROGRAM = 'vscode';
-    process.env.GEMINI_CLI_IDE_SERVER_PORT = '3000';
-    const settings: Settings = {};
-    const config = await loadCliConfig(settings, [], 'test-session', argv);
-    expect(config.getIdeMode()).toBe(true);
-  });
-
-  it('should be true when settings.ideMode is true and TERM_PROGRAM is vscode', async () => {
-    process.argv = ['node', 'script.js'];
-    const argv = await parseArguments();
-    process.env.TERM_PROGRAM = 'vscode';
-    process.env.GEMINI_CLI_IDE_SERVER_PORT = '3000';
-    const settings: Settings = { ideMode: true };
-    const config = await loadCliConfig(settings, [], 'test-session', argv);
-    expect(config.getIdeMode()).toBe(true);
-  });
-
-  it('should prioritize --ide-mode (true) over settings (false) when TERM_PROGRAM is vscode', async () => {
-    process.argv = ['node', 'script.js', '--ide-mode'];
-    const argv = await parseArguments();
-    process.env.TERM_PROGRAM = 'vscode';
-    process.env.GEMINI_CLI_IDE_SERVER_PORT = '3000';
-    const settings: Settings = { ideMode: false };
-    const config = await loadCliConfig(settings, [], 'test-session', argv);
-    expect(config.getIdeMode()).toBe(true);
-  });
-
-  it('should prioritize --no-ide-mode (false) over settings (true) even when TERM_PROGRAM is vscode', async () => {
-    process.argv = ['node', 'script.js', '--no-ide-mode'];
-    const argv = await parseArguments();
-    process.env.TERM_PROGRAM = 'vscode';
-    const settings: Settings = { ideMode: true };
-    const config = await loadCliConfig(settings, [], 'test-session', argv);
-    expect(config.getIdeMode()).toBe(false);
-  });
-
-  it('should be false when --ide-mode is true, TERM_PROGRAM is vscode, but SANDBOX is set', async () => {
-    process.argv = ['node', 'script.js', '--ide-mode'];
-    const argv = await parseArguments();
-    process.env.TERM_PROGRAM = 'vscode';
-    process.env.SANDBOX = 'true';
-    const settings: Settings = {};
-    const config = await loadCliConfig(settings, [], 'test-session', argv);
-    expect(config.getIdeMode()).toBe(false);
-  });
-
-  it('should be false when settings.ideMode is true, TERM_PROGRAM is vscode, but SANDBOX is set', async () => {
-    process.argv = ['node', 'script.js'];
-    const argv = await parseArguments();
-    process.env.TERM_PROGRAM = 'vscode';
-    process.env.SANDBOX = 'true';
-    const settings: Settings = { ideMode: true };
-    const config = await loadCliConfig(settings, [], 'test-session', argv);
-    expect(config.getIdeMode()).toBe(false);
+    expect(config.getIdeModeFeature()).toBe(false);
+  });
+});
+
+vi.mock('fs', async () => {
+  const actualFs = await vi.importActual<typeof fs>('fs');
+  const MOCK_CWD1 = process.cwd();
+  const MOCK_CWD2 = path.resolve(path.sep, 'home', 'user', 'project');
+
+  const mockPaths = new Set([
+    MOCK_CWD1,
+    MOCK_CWD2,
+    path.resolve(path.sep, 'cli', 'path1'),
+    path.resolve(path.sep, 'settings', 'path1'),
+    path.join(os.homedir(), 'settings', 'path2'),
+    path.join(MOCK_CWD2, 'cli', 'path2'),
+    path.join(MOCK_CWD2, 'settings', 'path3'),
+  ]);
+
+  return {
+    ...actualFs,
+    existsSync: vi.fn((p) => mockPaths.has(p.toString())),
+    statSync: vi.fn((p) => {
+      if (mockPaths.has(p.toString())) {
+        return { isDirectory: () => true };
+      }
+      // Fallback for other paths if needed, though the test should be specific.
+      return actualFs.statSync(p);
+    }),
+    realpathSync: vi.fn((p) => p),
+  };
+});
+
+describe('loadCliConfig with includeDirectories', () => {
+  const originalArgv = process.argv;
+  const originalEnv = { ...process.env };
+
+  beforeEach(() => {
+    vi.resetAllMocks();
+    vi.mocked(os.homedir).mockReturnValue('/mock/home/user');
+    process.env.GEMINI_API_KEY = 'test-api-key';
+    vi.spyOn(process, 'cwd').mockReturnValue(
+      path.resolve(path.sep, 'home', 'user', 'project'),
+    );
+  });
+
+  afterEach(() => {
+    process.argv = originalArgv;
+    process.env = originalEnv;
+    vi.restoreAllMocks();
+  });
+
+  it('should combine and resolve paths from settings and CLI arguments', async () => {
+    const mockCwd = path.resolve(path.sep, 'home', 'user', 'project');
+    process.argv = [
+      'node',
+      'script.js',
+      '--include-directories',
+      `${path.resolve(path.sep, 'cli', 'path1')},${path.join(mockCwd, 'cli', 'path2')}`,
+    ];
+    const argv = await parseArguments();
+    const settings: Settings = {
+      includeDirectories: [
+        path.resolve(path.sep, 'settings', 'path1'),
+        path.join(os.homedir(), 'settings', 'path2'),
+        path.join(mockCwd, 'settings', 'path3'),
+      ],
+    };
+    const config = await loadCliConfig(settings, [], 'test-session', argv);
+    const expected = [
+      mockCwd,
+      path.resolve(path.sep, 'cli', 'path1'),
+      path.join(mockCwd, 'cli', 'path2'),
+      path.resolve(path.sep, 'settings', 'path1'),
+      path.join(os.homedir(), 'settings', 'path2'),
+      path.join(mockCwd, 'settings', 'path3'),
+    ];
+    expect(config.getWorkspaceContext().getDirectories()).toEqual(
+      expect.arrayContaining(expected),
+    );
+    expect(config.getWorkspaceContext().getDirectories()).toHaveLength(
+      expected.length,
+    );
   });
 });

packages/cli/src/config/config.ts

@@ -4,6 +4,9 @@
  * SPDX-License-Identifier: Apache-2.0
  */
 
+import * as fs from 'fs';
+import * as path from 'path';
+import { homedir } from 'node:os';
 import yargs from 'yargs/yargs';
 import { hideBin } from 'yargs/helpers';
 import process from 'node:process';
@@ -19,13 +22,13 @@ import {
   FileDiscoveryService,
   TelemetryTarget,
   FileFilteringOptions,
-  IdeClient,
 } from '@qwen-code/qwen-code-core';
 import { Settings } from './settings.js';
 
 import { Extension, annotateActiveExtensions } from './extension.js';
 import { getCliVersion } from '../utils/version.js';
 import { loadSandboxConfig } from './sandboxConfig.js';
+import { resolvePath } from '../utils/resolvePath.js';
 
 // Simple console logger for now - replace with actual logger if available
 const logger = {
@@ -59,11 +62,14 @@ export interface CliArgs {
   experimentalAcp: boolean | undefined;
   extensions: string[] | undefined;
   listExtensions: boolean | undefined;
-  ideMode: boolean | undefined;
+  ideModeFeature: boolean | undefined;
   openaiLogging: boolean | undefined;
   openaiApiKey: string | undefined;
   openaiBaseUrl: string | undefined;
   proxy: string | undefined;
+  includeDirectories: string[] | undefined;
+  loadMemoryFromIncludeDirectories: boolean | undefined;
+  tavilyApiKey: string | undefined;
 }
 
 export async function parseArguments(): Promise<CliArgs> {
@@ -77,7 +83,7 @@ export async function parseArguments(): Promise<CliArgs> {
       alias: 'm',
       type: 'string',
       description: `Model`,
-      default: process.env.GEMINI_MODEL || DEFAULT_GEMINI_MODEL,
+      default: process.env.GEMINI_MODEL,
     })
     .option('prompt', {
       alias: 'p',
@@ -193,7 +199,7 @@ export async function parseArguments(): Promise<CliArgs> {
       type: 'boolean',
       description: 'List all available extensions and exit.',
     })
-    .option('ide-mode', {
+    .option('ide-mode-feature', {
       type: 'boolean',
       description: 'Run in IDE mode?',
     })
@@ -210,11 +216,30 @@ export async function parseArguments(): Promise<CliArgs> {
       type: 'string',
       description: 'OpenAI base URL (for custom endpoints)',
     })
+    .option('tavily-api-key', {
+      type: 'string',
+      description: 'Tavily API key for web search functionality',
+    })
     .option('proxy', {
       type: 'string',
       description:
         'Proxy for gemini client, like schema://user:password@host:port',
     })
+    .option('include-directories', {
+      type: 'array',
+      string: true,
+      description:
+        'Additional directories to include in the workspace (comma-separated or multiple --include-directories)',
+      coerce: (dirs: string[]) =>
+        // Handle comma-separated values
+        dirs.flatMap((dir) => dir.split(',').map((d) => d.trim())),
+    })
+    .option('load-memory-from-include-directories', {
+      type: 'boolean',
+      description:
+        'If true, when refreshing memory, QWEN.md files should be loaded from all directories that are added. If false, QWEN.md files should only be loaded from the primary working directory.',
+      default: false,
+    })
     .version(await getCliVersion()) // This will enable the --version flag based on package.json
     .alias('v', 'version')
     .help()
@@ -230,7 +255,11 @@ export async function parseArguments(): Promise<CliArgs> {
     });
 
   yargsInstance.wrap(yargsInstance.terminalWidth());
-  return yargsInstance.argv;
+  const result = yargsInstance.parseSync();
+
+  // The import format is now only controlled by settings.memoryImportFormat
+  // We no longer accept it as a CLI argument
+  return result as CliArgs;
 }
 
 // This function is now a thin wrapper around the server's implementation.
@@ -238,25 +267,37 @@ export async function parseArguments(): Promise<CliArgs> {
 // TODO: Consider if App.tsx should get memory via a server call or if Config should refresh itself.
 export async function loadHierarchicalGeminiMemory(
   currentWorkingDirectory: string,
+  includeDirectoriesToReadGemini: readonly string[] = [],
   debugMode: boolean,
   fileService: FileDiscoveryService,
   settings: Settings,
   extensionContextFilePaths: string[] = [],
+  memoryImportFormat: 'flat' | 'tree' = 'tree',
   fileFilteringOptions?: FileFilteringOptions,
 ): Promise<{ memoryContent: string; fileCount: number }> {
+  // FIX: Use real, canonical paths for a reliable comparison to handle symlinks.
+  const realCwd = fs.realpathSync(path.resolve(currentWorkingDirectory));
+  const realHome = fs.realpathSync(path.resolve(homedir()));
+  const isHomeDirectory = realCwd === realHome;
+
+  // If it is the home directory, pass an empty string to the core memory
+  // function to signal that it should skip the workspace search.
+  const effectiveCwd = isHomeDirectory ? '' : currentWorkingDirectory;
+
   if (debugMode) {
     logger.debug(
-      `CLI: Delegating hierarchical memory load to server for CWD: ${currentWorkingDirectory}`,
+      `CLI: Delegating hierarchical memory load to server for CWD: ${currentWorkingDirectory} (memoryImportFormat: ${memoryImportFormat})`,
     );
   }
 
-  // Directly call the server function.
-  // The server function will use its own homedir() for the global path.
+  // Directly call the server function with the corrected path.
   return loadServerHierarchicalMemory(
-    currentWorkingDirectory,
+    effectiveCwd,
+    includeDirectoriesToReadGemini,
     debugMode,
     fileService,
     extensionContextFilePaths,
+    memoryImportFormat,
     fileFilteringOptions,
     settings.memoryDiscoveryMaxDirs,
   );
@@ -272,17 +313,13 @@ export async function loadCliConfig(
     argv.debug ||
     [process.env.DEBUG, process.env.DEBUG_MODE].some(
       (v) => v === 'true' || v === '1',
-    );
+    ) ||
+    false;
+  const memoryImportFormat = settings.memoryImportFormat || 'tree';
 
-  const ideMode =
-    (argv.ideMode ?? settings.ideMode ?? false) &&
-    process.env.TERM_PROGRAM === 'vscode' &&
-    !process.env.SANDBOX;
-
-  let ideClient: IdeClient | undefined;
-  if (ideMode) {
-    ideClient = new IdeClient();
-  }
+  const ideMode = settings.ideMode ?? false;
+  const ideModeFeature =
+    argv.ideModeFeature ?? settings.ideModeFeature ?? false;
 
   const allExtensions = annotateActiveExtensions(
     extensions,
@@ -302,6 +339,11 @@ export async function loadCliConfig(
     process.env.OPENAI_BASE_URL = argv.openaiBaseUrl;
   }
 
+  // Handle Tavily API key from command line
+  if (argv.tavilyApiKey) {
+    process.env.TAVILY_API_KEY = argv.tavilyApiKey;
+  }
+
   // Set the context filename in the server's memoryTool module BEFORE loading memory
   // TODO(b/343434939): This is a bit of a hack. The contextFileName should ideally be passed
   // directly to the Config constructor in core, and have core handle setGeminiMdFilename.
@@ -324,13 +366,19 @@ export async function loadCliConfig(
     ...settings.fileFiltering,
   };
 
+  const includeDirectories = (settings.includeDirectories || [])
+    .map(resolvePath)
+    .concat((argv.includeDirectories || []).map(resolvePath));
+
   // Call the (now wrapper) loadHierarchicalGeminiMemory which calls the server's version
   const { memoryContent, fileCount } = await loadHierarchicalGeminiMemory(
     process.cwd(),
+    settings.loadMemoryFromIncludeDirectories ? includeDirectories : [],
     debugMode,
     fileService,
     settings,
     extensionContextFilePaths,
+    memoryImportFormat,
     fileFiltering,
   );
 
@@ -385,12 +433,18 @@ export async function loadCliConfig(
   }
 
   const sandboxConfig = await loadSandboxConfig(settings, argv);
+  const cliVersion = await getCliVersion();
 
   return new Config({
     sessionId,
     embeddingModel: DEFAULT_GEMINI_EMBEDDING_MODEL,
     sandbox: sandboxConfig,
     targetDir: process.cwd(),
+    includeDirectories,
+    loadMemoryFromIncludeDirectories:
+      argv.loadMemoryFromIncludeDirectories ||
+      settings.loadMemoryFromIncludeDirectories ||
+      false,
     debugMode,
     question: argv.promptInteractive || argv.prompt || '',
     fullContext: argv.allFiles || argv.all_files || false,
@@ -438,10 +492,10 @@ export async function loadCliConfig(
     cwd: process.cwd(),
     fileDiscoveryService: fileService,
     bugCommand: settings.bugCommand,
-    model: argv.model!,
+    model: argv.model || settings.model || DEFAULT_GEMINI_MODEL,
     extensionContextFilePaths,
     maxSessionTurns: settings.maxSessionTurns ?? -1,
-    sessionTokenLimit: settings.sessionTokenLimit ?? 32000,
+    sessionTokenLimit: settings.sessionTokenLimit ?? -1,
     maxFolderItems: settings.maxFolderItems ?? 20,
     experimentalAcp: argv.experimentalAcp || false,
     listExtensions: argv.listExtensions || false,
@@ -450,7 +504,7 @@ export async function loadCliConfig(
     noBrowser: !!process.env.NO_BROWSER,
     summarizeToolOutput: settings.summarizeToolOutput,
     ideMode,
-    ideClient,
+    ideModeFeature,
     enableOpenAILogging:
       (typeof argv.openaiLogging === 'undefined'
         ? settings.enableOpenAILogging
@@ -468,6 +522,9 @@ export async function loadCliConfig(
       },
     ],
     contentGenerator: settings.contentGenerator,
+    cliVersion,
+    tavilyApiKey:
+      argv.tavilyApiKey || settings.tavilyApiKey || process.env.TAVILY_API_KEY,
   });
 }
 

packages/cli/src/config/extension.test.ts

@@ -29,10 +29,10 @@ describe('loadExtensions', () => {
 
   beforeEach(() => {
     tempWorkspaceDir = fs.mkdtempSync(
-      path.join(os.tmpdir(), 'gemini-cli-test-workspace-'),
+      path.join(os.tmpdir(), 'qwen-code-test-workspace-'),
     );
     tempHomeDir = fs.mkdtempSync(
-      path.join(os.tmpdir(), 'gemini-cli-test-home-'),
+      path.join(os.tmpdir(), 'qwen-code-test-home-'),
     );
     vi.mocked(os.homedir).mockReturnValue(tempHomeDir);
   });
@@ -42,6 +42,81 @@ describe('loadExtensions', () => {
     fs.rmSync(tempHomeDir, { recursive: true, force: true });
   });
 
+  it('should include extension path in loaded extension', () => {
+    const workspaceExtensionsDir = path.join(
+      tempWorkspaceDir,
+      EXTENSIONS_DIRECTORY_NAME,
+    );
+    fs.mkdirSync(workspaceExtensionsDir, { recursive: true });
+
+    const extensionDir = path.join(workspaceExtensionsDir, 'test-extension');
+    fs.mkdirSync(extensionDir, { recursive: true });
+
+    const config = {
+      name: 'test-extension',
+      version: '1.0.0',
+    };
+    fs.writeFileSync(
+      path.join(extensionDir, EXTENSIONS_CONFIG_FILENAME),
+      JSON.stringify(config),
+    );
+
+    const extensions = loadExtensions(tempWorkspaceDir);
+    expect(extensions).toHaveLength(1);
+    expect(extensions[0].path).toBe(extensionDir);
+    expect(extensions[0].config.name).toBe('test-extension');
+  });
+
+  it('should include extension path in loaded extension', () => {
+    const workspaceExtensionsDir = path.join(
+      tempWorkspaceDir,
+      EXTENSIONS_DIRECTORY_NAME,
+    );
+    fs.mkdirSync(workspaceExtensionsDir, { recursive: true });
+
+    const extensionDir = path.join(workspaceExtensionsDir, 'test-extension');
+    fs.mkdirSync(extensionDir, { recursive: true });
+
+    const config = {
+      name: 'test-extension',
+      version: '1.0.0',
+    };
+    fs.writeFileSync(
+      path.join(extensionDir, EXTENSIONS_CONFIG_FILENAME),
+      JSON.stringify(config),
+    );
+
+    const extensions = loadExtensions(tempWorkspaceDir);
+    expect(extensions).toHaveLength(1);
+    expect(extensions[0].path).toBe(extensionDir);
+    expect(extensions[0].config.name).toBe('test-extension');
+  });
+
+  it('should include extension path in loaded extension', () => {
+    const workspaceExtensionsDir = path.join(
+      tempWorkspaceDir,
+      EXTENSIONS_DIRECTORY_NAME,
+    );
+    fs.mkdirSync(workspaceExtensionsDir, { recursive: true });
+
+    const extensionDir = path.join(workspaceExtensionsDir, 'test-extension');
+    fs.mkdirSync(extensionDir, { recursive: true });
+
+    const config = {
+      name: 'test-extension',
+      version: '1.0.0',
+    };
+    fs.writeFileSync(
+      path.join(extensionDir, EXTENSIONS_CONFIG_FILENAME),
+      JSON.stringify(config),
+    );
+
+    const extensions = loadExtensions(tempWorkspaceDir);
+    expect(extensions).toHaveLength(1);
+    expect(extensions[0].path).toBe(extensionDir);
+    expect(extensions[0].config.name).toBe('test-extension');
+  });
+
   it('should load context file path when QWEN.md is present', () => {
     const workspaceExtensionsDir = path.join(
       tempWorkspaceDir,

packages/cli/src/config/extension.ts

@@ -13,6 +13,7 @@ export const EXTENSIONS_DIRECTORY_NAME = path.join('.qwen', 'extensions');
 export const EXTENSIONS_CONFIG_FILENAME = 'gemini-extension.json';
 
 export interface Extension {
+  path: string;
   config: ExtensionConfig;
   contextFiles: string[];
 }
@@ -90,6 +91,7 @@ function loadExtension(extensionDir: string): Extension | null {
       .filter((contextFilePath) => fs.existsSync(contextFilePath));
 
     return {
+      path: extensionDir,
       config,
       contextFiles,
     };
@@ -121,6 +123,7 @@ export function annotateActiveExtensions(
       name: extension.config.name,
       version: extension.config.version,
       isActive: true,
+      path: extension.path,
     }));
   }
 
@@ -136,6 +139,7 @@ export function annotateActiveExtensions(
       name: extension.config.name,
       version: extension.config.version,
       isActive: false,
+      path: extension.path,
     }));
   }
 
@@ -153,6 +157,7 @@ export function annotateActiveExtensions(
       name: extension.config.name,
       version: extension.config.version,
       isActive,
+      path: extension.path,
     });
   }
 

packages/cli/src/config/settings.test.ts

@@ -59,7 +59,21 @@ const MOCK_WORKSPACE_SETTINGS_PATH = pathActual.join(
   'settings.json',
 );
 
-vi.mock('fs');
+vi.mock('fs', async (importOriginal) => {
+  // Get all the functions from the real 'fs' module
+  const actualFs = await importOriginal<typeof fs>();
+
+  return {
+    ...actualFs, // Keep all the real functions
+    // Now, just override the ones we need for the test
+    existsSync: vi.fn(),
+    readFileSync: vi.fn(),
+    writeFileSync: vi.fn(),
+    mkdirSync: vi.fn(),
+    realpathSync: (p: string) => p,
+  };
+});
+
 vi.mock('strip-json-comments', () => ({
   default: vi.fn((content) => content),
 }));
@@ -98,6 +112,7 @@ describe('Settings Loading and Merging', () => {
       expect(settings.merged).toEqual({
         customThemes: {},
         mcpServers: {},
+        includeDirectories: [],
       });
       expect(settings.errors.length).toBe(0);
     });
@@ -131,6 +146,7 @@ describe('Settings Loading and Merging', () => {
         ...systemSettingsContent,
         customThemes: {},
         mcpServers: {},
+        includeDirectories: [],
       });
     });
 
@@ -164,6 +180,7 @@ describe('Settings Loading and Merging', () => {
         ...userSettingsContent,
         customThemes: {},
         mcpServers: {},
+        includeDirectories: [],
       });
     });
 
@@ -195,6 +212,7 @@ describe('Settings Loading and Merging', () => {
         ...workspaceSettingsContent,
         customThemes: {},
         mcpServers: {},
+        includeDirectories: [],
       });
     });
 
@@ -232,6 +250,7 @@ describe('Settings Loading and Merging', () => {
         contextFileName: 'WORKSPACE_CONTEXT.md',
         customThemes: {},
         mcpServers: {},
+        includeDirectories: [],
       });
     });
 
@@ -281,6 +300,7 @@ describe('Settings Loading and Merging', () => {
         allowMCPServers: ['server1', 'server2'],
         customThemes: {},
         mcpServers: {},
+        includeDirectories: [],
       });
     });
 
@@ -320,6 +340,86 @@ describe('Settings Loading and Merging', () => {
       expect(settings.merged.contextFileName).toBe('PROJECT_SPECIFIC.md');
     });
 
+    it('should handle excludedProjectEnvVars correctly when only in user settings', () => {
+      (mockFsExistsSync as Mock).mockImplementation(
+        (p: fs.PathLike) => p === USER_SETTINGS_PATH,
+      );
+      const userSettingsContent = {
+        excludedProjectEnvVars: ['DEBUG', 'NODE_ENV', 'CUSTOM_VAR'],
+      };
+      (fs.readFileSync as Mock).mockImplementation(
+        (p: fs.PathOrFileDescriptor) => {
+          if (p === USER_SETTINGS_PATH)
+            return JSON.stringify(userSettingsContent);
+          return '';
+        },
+      );
+
+      const settings = loadSettings(MOCK_WORKSPACE_DIR);
+      expect(settings.merged.excludedProjectEnvVars).toEqual([
+        'DEBUG',
+        'NODE_ENV',
+        'CUSTOM_VAR',
+      ]);
+    });
+
+    it('should handle excludedProjectEnvVars correctly when only in workspace settings', () => {
+      (mockFsExistsSync as Mock).mockImplementation(
+        (p: fs.PathLike) => p === MOCK_WORKSPACE_SETTINGS_PATH,
+      );
+      const workspaceSettingsContent = {
+        excludedProjectEnvVars: ['WORKSPACE_DEBUG', 'WORKSPACE_VAR'],
+      };
+      (fs.readFileSync as Mock).mockImplementation(
+        (p: fs.PathOrFileDescriptor) => {
+          if (p === MOCK_WORKSPACE_SETTINGS_PATH)
+            return JSON.stringify(workspaceSettingsContent);
+          return '';
+        },
+      );
+
+      const settings = loadSettings(MOCK_WORKSPACE_DIR);
+      expect(settings.merged.excludedProjectEnvVars).toEqual([
+        'WORKSPACE_DEBUG',
+        'WORKSPACE_VAR',
+      ]);
+    });
+
+    it('should merge excludedProjectEnvVars with workspace taking precedence over user', () => {
+      (mockFsExistsSync as Mock).mockReturnValue(true);
+      const userSettingsContent = {
+        excludedProjectEnvVars: ['DEBUG', 'NODE_ENV', 'USER_VAR'],
+      };
+      const workspaceSettingsContent = {
+        excludedProjectEnvVars: ['WORKSPACE_DEBUG', 'WORKSPACE_VAR'],
+      };
+
+      (fs.readFileSync as Mock).mockImplementation(
+        (p: fs.PathOrFileDescriptor) => {
+          if (p === USER_SETTINGS_PATH)
+            return JSON.stringify(userSettingsContent);
+          if (p === MOCK_WORKSPACE_SETTINGS_PATH)
+            return JSON.stringify(workspaceSettingsContent);
+          return '';
+        },
+      );
+
+      const settings = loadSettings(MOCK_WORKSPACE_DIR);
+      expect(settings.user.settings.excludedProjectEnvVars).toEqual([
+        'DEBUG',
+        'NODE_ENV',
+        'USER_VAR',
+      ]);
+      expect(settings.workspace.settings.excludedProjectEnvVars).toEqual([
+        'WORKSPACE_DEBUG',
+        'WORKSPACE_VAR',
+      ]);
+      expect(settings.merged.excludedProjectEnvVars).toEqual([
+        'WORKSPACE_DEBUG',
+        'WORKSPACE_VAR',
+      ]);
+    });
+
     it('should default contextFileName to undefined if not in any settings file', () => {
       (mockFsExistsSync as Mock).mockReturnValue(true);
       const userSettingsContent = { theme: 'dark' };
@@ -522,6 +622,40 @@ describe('Settings Loading and Merging', () => {
       expect(settings.merged.mcpServers).toEqual({});
     });
 
+    it('should merge includeDirectories from all scopes', () => {
+      (mockFsExistsSync as Mock).mockReturnValue(true);
+      const systemSettingsContent = {
+        includeDirectories: ['/system/dir'],
+      };
+      const userSettingsContent = {
+        includeDirectories: ['/user/dir1', '/user/dir2'],
+      };
+      const workspaceSettingsContent = {
+        includeDirectories: ['/workspace/dir'],
+      };
+
+      (fs.readFileSync as Mock).mockImplementation(
+        (p: fs.PathOrFileDescriptor) => {
+          if (p === getSystemSettingsPath())
+            return JSON.stringify(systemSettingsContent);
+          if (p === USER_SETTINGS_PATH)
+            return JSON.stringify(userSettingsContent);
+          if (p === MOCK_WORKSPACE_SETTINGS_PATH)
+            return JSON.stringify(workspaceSettingsContent);
+          return '{}';
+        },
+      );
+
+      const settings = loadSettings(MOCK_WORKSPACE_DIR);
+
+      expect(settings.merged.includeDirectories).toEqual([
+        '/system/dir',
+        '/user/dir1',
+        '/user/dir2',
+        '/workspace/dir',
+      ]);
+    });
+
     it('should handle JSON parsing errors gracefully', () => {
       (mockFsExistsSync as Mock).mockReturnValue(true); // Both files "exist"
       const invalidJsonContent = 'invalid json';
@@ -560,6 +694,7 @@ describe('Settings Loading and Merging', () => {
       expect(settings.merged).toEqual({
         customThemes: {},
         mcpServers: {},
+        includeDirectories: [],
       });
 
       // Check that error objects are populated in settings.errors
@@ -777,6 +912,48 @@ describe('Settings Loading and Merging', () => {
       }
     });
 
+    it('should correctly merge dnsResolutionOrder with workspace taking precedence', () => {
+      (mockFsExistsSync as Mock).mockReturnValue(true);
+      const userSettingsContent = {
+        dnsResolutionOrder: 'ipv4first',
+      };
+      const workspaceSettingsContent = {
+        dnsResolutionOrder: 'verbatim',
+      };
+
+      (fs.readFileSync as Mock).mockImplementation(
+        (p: fs.PathOrFileDescriptor) => {
+          if (p === USER_SETTINGS_PATH)
+            return JSON.stringify(userSettingsContent);
+          if (p === MOCK_WORKSPACE_SETTINGS_PATH)
+            return JSON.stringify(workspaceSettingsContent);
+          return '{}';
+        },
+      );
+
+      const settings = loadSettings(MOCK_WORKSPACE_DIR);
+      expect(settings.merged.dnsResolutionOrder).toBe('verbatim');
+    });
+
+    it('should use user dnsResolutionOrder if workspace is not defined', () => {
+      (mockFsExistsSync as Mock).mockImplementation(
+        (p: fs.PathLike) => p === USER_SETTINGS_PATH,
+      );
+      const userSettingsContent = {
+        dnsResolutionOrder: 'verbatim',
+      };
+      (fs.readFileSync as Mock).mockImplementation(
+        (p: fs.PathOrFileDescriptor) => {
+          if (p === USER_SETTINGS_PATH)
+            return JSON.stringify(userSettingsContent);
+          return '{}';
+        },
+      );
+
+      const settings = loadSettings(MOCK_WORKSPACE_DIR);
+      expect(settings.merged.dnsResolutionOrder).toBe('verbatim');
+    });
+
     it('should leave unresolved environment variables as is', () => {
       const userSettingsContent = { apiKey: '$UNDEFINED_VAR' };
       (mockFsExistsSync as Mock).mockImplementation(
@@ -954,6 +1131,7 @@ describe('Settings Loading and Merging', () => {
           ...systemSettingsContent,
           customThemes: {},
           mcpServers: {},
+          includeDirectories: [],
         });
       });
     });
@@ -999,4 +1177,140 @@ describe('Settings Loading and Merging', () => {
       expect(loadedSettings.merged.theme).toBe('ocean');
     });
   });
+
+  describe('excludedProjectEnvVars integration', () => {
+    const originalEnv = { ...process.env };
+
+    beforeEach(() => {
+      process.env = { ...originalEnv };
+    });
+
+    afterEach(() => {
+      process.env = originalEnv;
+    });
+
+    it('should exclude DEBUG and DEBUG_MODE from project .env files by default', () => {
+      // Create a workspace settings file with excludedProjectEnvVars
+      const workspaceSettingsContent = {
+        excludedProjectEnvVars: ['DEBUG', 'DEBUG_MODE'],
+      };
+
+      (mockFsExistsSync as Mock).mockImplementation(
+        (p: fs.PathLike) => p === MOCK_WORKSPACE_SETTINGS_PATH,
+      );
+
+      (fs.readFileSync as Mock).mockImplementation(
+        (p: fs.PathOrFileDescriptor) => {
+          if (p === MOCK_WORKSPACE_SETTINGS_PATH)
+            return JSON.stringify(workspaceSettingsContent);
+          return '{}';
+        },
+      );
+
+      // Mock findEnvFile to return a project .env file
+      const originalFindEnvFile = (
+        loadSettings as unknown as { findEnvFile: () => string }
+      ).findEnvFile;
+      (loadSettings as unknown as { findEnvFile: () => string }).findEnvFile =
+        () => '/mock/project/.env';
+
+      // Mock fs.readFileSync for .env file content
+      const originalReadFileSync = fs.readFileSync;
+      (fs.readFileSync as Mock).mockImplementation(
+        (p: fs.PathOrFileDescriptor) => {
+          if (p === '/mock/project/.env') {
+            return 'DEBUG=true\nDEBUG_MODE=1\nGEMINI_API_KEY=test-key';
+          }
+          if (p === MOCK_WORKSPACE_SETTINGS_PATH) {
+            return JSON.stringify(workspaceSettingsContent);
+          }
+          return '{}';
+        },
+      );
+
+      try {
+        // This will call loadEnvironment internally with the merged settings
+        const settings = loadSettings(MOCK_WORKSPACE_DIR);
+
+        // Verify the settings were loaded correctly
+        expect(settings.merged.excludedProjectEnvVars).toEqual([
+          'DEBUG',
+          'DEBUG_MODE',
+        ]);
+
+        // Note: We can't directly test process.env changes here because the mocking
+        // prevents the actual file system operations, but we can verify the settings
+        // are correctly merged and passed to loadEnvironment
+      } finally {
+        (loadSettings as unknown as { findEnvFile: () => string }).findEnvFile =
+          originalFindEnvFile;
+        (fs.readFileSync as Mock).mockImplementation(originalReadFileSync);
+      }
+    });
+
+    it('should respect custom excludedProjectEnvVars from user settings', () => {
+      const userSettingsContent = {
+        excludedProjectEnvVars: ['NODE_ENV', 'DEBUG'],
+      };
+
+      (mockFsExistsSync as Mock).mockImplementation(
+        (p: fs.PathLike) => p === USER_SETTINGS_PATH,
+      );
+
+      (fs.readFileSync as Mock).mockImplementation(
+        (p: fs.PathOrFileDescriptor) => {
+          if (p === USER_SETTINGS_PATH)
+            return JSON.stringify(userSettingsContent);
+          return '{}';
+        },
+      );
+
+      const settings = loadSettings(MOCK_WORKSPACE_DIR);
+      expect(settings.user.settings.excludedProjectEnvVars).toEqual([
+        'NODE_ENV',
+        'DEBUG',
+      ]);
+      expect(settings.merged.excludedProjectEnvVars).toEqual([
+        'NODE_ENV',
+        'DEBUG',
+      ]);
+    });
+
+    it('should merge excludedProjectEnvVars with workspace taking precedence', () => {
+      const userSettingsContent = {
+        excludedProjectEnvVars: ['DEBUG', 'NODE_ENV', 'USER_VAR'],
+      };
+      const workspaceSettingsContent = {
+        excludedProjectEnvVars: ['WORKSPACE_DEBUG', 'WORKSPACE_VAR'],
+      };
+
+      (mockFsExistsSync as Mock).mockReturnValue(true);
+
+      (fs.readFileSync as Mock).mockImplementation(
+        (p: fs.PathOrFileDescriptor) => {
+          if (p === USER_SETTINGS_PATH)
+            return JSON.stringify(userSettingsContent);
+          if (p === MOCK_WORKSPACE_SETTINGS_PATH)
+            return JSON.stringify(workspaceSettingsContent);
+          return '{}';
+        },
+      );
+
+      const settings = loadSettings(MOCK_WORKSPACE_DIR);
+
+      expect(settings.user.settings.excludedProjectEnvVars).toEqual([
+        'DEBUG',
+        'NODE_ENV',
+        'USER_VAR',
+      ]);
+      expect(settings.workspace.settings.excludedProjectEnvVars).toEqual([
+        'WORKSPACE_DEBUG',
+        'WORKSPACE_VAR',
+      ]);
+      expect(settings.merged.excludedProjectEnvVars).toEqual([
+        'WORKSPACE_DEBUG',
+        'WORKSPACE_VAR',
+      ]);
+    });
+  });
 });

packages/cli/src/config/settings.ts

@@ -24,6 +24,7 @@ import { CustomTheme } from '../ui/themes/theme.js';
 export const SETTINGS_DIRECTORY_NAME = '.qwen';
 export const USER_SETTINGS_DIR = path.join(homedir(), SETTINGS_DIRECTORY_NAME);
 export const USER_SETTINGS_PATH = path.join(USER_SETTINGS_DIR, 'settings.json');
+export const DEFAULT_EXCLUDED_ENV_VARS = ['DEBUG', 'DEBUG_MODE'];
 
 export function getSystemSettingsPath(): string {
   if (process.env.GEMINI_CLI_SYSTEM_SETTINGS_PATH) {
@@ -38,6 +39,12 @@ export function getSystemSettingsPath(): string {
   }
 }
 
+export function getWorkspaceSettingsPath(workspaceDir: string): string {
+  return path.join(workspaceDir, SETTINGS_DIRECTORY_NAME, 'settings.json');
+}
+
+export type DnsResolutionOrder = 'ipv4first' | 'verbatim';
+
 export enum SettingScope {
   User = 'User',
   Workspace = 'Workspace',
@@ -60,6 +67,7 @@ export interface Settings {
   theme?: string;
   customThemes?: Record<string, CustomTheme>;
   selectedAuthType?: AuthType;
+  useExternalAuth?: boolean;
   sandbox?: boolean | string;
   coreTools?: string[];
   excludeTools?: string[];
@@ -78,6 +86,8 @@ export interface Settings {
   bugCommand?: BugCommandSettings;
   checkpointing?: CheckpointingSettings;
   autoConfigureMaxOldSpaceSize?: boolean;
+  /** The model name to use (e.g 'gemini-9.0-pro') */
+  model?: string;
   enableOpenAILogging?: boolean;
 
   // Git-aware file filtering settings
@@ -105,10 +115,24 @@ export interface Settings {
   summarizeToolOutput?: Record<string, SummarizeToolOutputSettings>;
 
   vimMode?: boolean;
+  memoryImportFormat?: 'tree' | 'flat';
 
-  // Add other settings here.
+  // Flag to be removed post-launch.
+  ideModeFeature?: boolean;
+  /// IDE mode setting configured via slash command toggle.
   ideMode?: boolean;
+
+  // Setting for disabling auto-update.
+  disableAutoUpdate?: boolean;
+
+  // Setting for disabling the update nag message.
+  disableUpdateNag?: boolean;
+
   memoryDiscoveryMaxDirs?: number;
+  // Environment variables to exclude from project .env files
+  excludedProjectEnvVars?: string[];
+  dnsResolutionOrder?: DnsResolutionOrder;
+
   sampling_params?: Record<string, unknown>;
   systemPromptMappings?: Array<{
     baseUrls: string[];
@@ -119,6 +143,13 @@ export interface Settings {
     timeout?: number;
     maxRetries?: number;
   };
+
+  includeDirectories?: string[];
+
+  loadMemoryFromIncludeDirectories?: boolean;
+
+  // Web search API keys
+  tavilyApiKey?: string;
 }
 
 export interface SettingsError {
@@ -174,6 +205,11 @@ export class LoadedSettings {
         ...(workspace.mcpServers || {}),
         ...(system.mcpServers || {}),
       },
+      includeDirectories: [
+        ...(system.includeDirectories || []),
+        ...(user.includeDirectories || []),
+        ...(workspace.includeDirectories || []),
+      ],
     };
   }
 
@@ -295,15 +331,61 @@ export function setUpCloudShellEnvironment(envFilePath: string | null): void {
   }
 }
 
-export function loadEnvironment(): void {
+export function loadEnvironment(settings?: Settings): void {
   const envFilePath = findEnvFile(process.cwd());
 
+  // Cloud Shell environment variable handling
   if (process.env.CLOUD_SHELL === 'true') {
     setUpCloudShellEnvironment(envFilePath);
   }
 
+  // If no settings provided, try to load workspace settings for exclusions
+  let resolvedSettings = settings;
+  if (!resolvedSettings) {
+    const workspaceSettingsPath = getWorkspaceSettingsPath(process.cwd());
+    try {
+      if (fs.existsSync(workspaceSettingsPath)) {
+        const workspaceContent = fs.readFileSync(
+          workspaceSettingsPath,
+          'utf-8',
+        );
+        const parsedWorkspaceSettings = JSON.parse(
+          stripJsonComments(workspaceContent),
+        ) as Settings;
+        resolvedSettings = resolveEnvVarsInObject(parsedWorkspaceSettings);
+      }
+    } catch (_e) {
+      // Ignore errors loading workspace settings
+    }
+  }
+
   if (envFilePath) {
-    dotenv.config({ path: envFilePath, quiet: true });
+    // Manually parse and load environment variables to handle exclusions correctly.
+    // This avoids modifying environment variables that were already set from the shell.
+    try {
+      const envFileContent = fs.readFileSync(envFilePath, 'utf-8');
+      const parsedEnv = dotenv.parse(envFileContent);
+
+      const excludedVars =
+        resolvedSettings?.excludedProjectEnvVars || DEFAULT_EXCLUDED_ENV_VARS;
+      const isProjectEnvFile = !envFilePath.includes(GEMINI_DIR);
+
+      for (const key in parsedEnv) {
+        if (Object.hasOwn(parsedEnv, key)) {
+          // If it's a project .env file, skip loading excluded variables.
+          if (isProjectEnvFile && excludedVars.includes(key)) {
+            continue;
+          }
+
+          // Load variable only if it's not already set in the environment.
+          if (!Object.hasOwn(process.env, key)) {
+            process.env[key] = parsedEnv[key];
+          }
+        }
+      }
+    } catch (_e) {
+      // Errors are ignored to match the behavior of `dotenv.config({ quiet: true })`.
+    }
   }
 }
 
@@ -312,12 +394,29 @@ export function loadEnvironment(): void {
  * Project settings override user settings.
  */
 export function loadSettings(workspaceDir: string): LoadedSettings {
-  loadEnvironment();
   let systemSettings: Settings = {};
   let userSettings: Settings = {};
   let workspaceSettings: Settings = {};
   const settingsErrors: SettingsError[] = [];
   const systemSettingsPath = getSystemSettingsPath();
+
+  // Resolve paths to their canonical representation to handle symlinks
+  const resolvedWorkspaceDir = path.resolve(workspaceDir);
+  const resolvedHomeDir = path.resolve(homedir());
+
+  let realWorkspaceDir = resolvedWorkspaceDir;
+  try {
+    // fs.realpathSync gets the "true" path, resolving any symlinks
+    realWorkspaceDir = fs.realpathSync(resolvedWorkspaceDir);
+  } catch (_e) {
+    // This is okay. The path might not exist yet, and that's a valid state.
+  }
+
+  // We expect homedir to always exist and be resolvable.
+  const realHomeDir = fs.realpathSync(resolvedHomeDir);
+
+  const workspaceSettingsPath = getWorkspaceSettingsPath(workspaceDir);
+
   // Load system settings
   try {
     if (fs.existsSync(systemSettingsPath)) {
@@ -356,37 +455,34 @@ export function loadSettings(workspaceDir: string): LoadedSettings {
     });
   }
 
-  const workspaceSettingsPath = path.join(
-    workspaceDir,
-    SETTINGS_DIRECTORY_NAME,
-    'settings.json',
-  );
-
-  // Load workspace settings
-  try {
-    if (fs.existsSync(workspaceSettingsPath)) {
-      const projectContent = fs.readFileSync(workspaceSettingsPath, 'utf-8');
-      const parsedWorkspaceSettings = JSON.parse(
-        stripJsonComments(projectContent),
-      ) as Settings;
-      workspaceSettings = resolveEnvVarsInObject(parsedWorkspaceSettings);
-      if (workspaceSettings.theme && workspaceSettings.theme === 'VS') {
-        workspaceSettings.theme = DefaultLight.name;
-      } else if (
-        workspaceSettings.theme &&
-        workspaceSettings.theme === 'VS2015'
-      ) {
-        workspaceSettings.theme = DefaultDark.name;
+  if (realWorkspaceDir !== realHomeDir) {
+    // Load workspace settings
+    try {
+      if (fs.existsSync(workspaceSettingsPath)) {
+        const projectContent = fs.readFileSync(workspaceSettingsPath, 'utf-8');
+        const parsedWorkspaceSettings = JSON.parse(
+          stripJsonComments(projectContent),
+        ) as Settings;
+        workspaceSettings = resolveEnvVarsInObject(parsedWorkspaceSettings);
+        if (workspaceSettings.theme && workspaceSettings.theme === 'VS') {
+          workspaceSettings.theme = DefaultLight.name;
+        } else if (
+          workspaceSettings.theme &&
+          workspaceSettings.theme === 'VS2015'
+        ) {
+          workspaceSettings.theme = DefaultDark.name;
+        }
       }
+    } catch (error: unknown) {
+      settingsErrors.push({
+        message: getErrorMessage(error),
+        path: workspaceSettingsPath,
+      });
     }
-  } catch (error: unknown) {
-    settingsErrors.push({
-      message: getErrorMessage(error),
-      path: workspaceSettingsPath,
-    });
   }
 
-  return new LoadedSettings(
+  // Create LoadedSettings first
+  const loadedSettings = new LoadedSettings(
     {
       path: systemSettingsPath,
       settings: systemSettings,
@@ -401,6 +497,11 @@ export function loadSettings(workspaceDir: string): LoadedSettings {
     },
     settingsErrors,
   );
+
+  // Load environment with merged settings
+  loadEnvironment(loadedSettings.merged);
+
+  return loadedSettings;
 }
 
 export function saveSettings(settingsFile: SettingsFile): void {

packages/cli/src/gemini.test.tsx

@@ -6,7 +6,11 @@
 
 import stripAnsi from 'strip-ansi';
 import { describe, it, expect, vi, beforeEach, afterEach } from 'vitest';
-import { main, setupUnhandledRejectionHandler } from './gemini.js';
+import {
+  main,
+  setupUnhandledRejectionHandler,
+  validateDnsResolutionOrder,
+} from './gemini.js';
 import {
   LoadedSettings,
   SettingsFile,
@@ -211,3 +215,38 @@ describe('gemini.tsx main function', () => {
     processExitSpy.mockRestore();
   });
 });
+
+describe('validateDnsResolutionOrder', () => {
+  let consoleWarnSpy: ReturnType<typeof vi.spyOn>;
+
+  beforeEach(() => {
+    consoleWarnSpy = vi.spyOn(console, 'warn').mockImplementation(() => {});
+  });
+
+  afterEach(() => {
+    consoleWarnSpy.mockRestore();
+  });
+
+  it('should return "ipv4first" when the input is "ipv4first"', () => {
+    expect(validateDnsResolutionOrder('ipv4first')).toBe('ipv4first');
+    expect(consoleWarnSpy).not.toHaveBeenCalled();
+  });
+
+  it('should return "verbatim" when the input is "verbatim"', () => {
+    expect(validateDnsResolutionOrder('verbatim')).toBe('verbatim');
+    expect(consoleWarnSpy).not.toHaveBeenCalled();
+  });
+
+  it('should return the default "ipv4first" when the input is undefined', () => {
+    expect(validateDnsResolutionOrder(undefined)).toBe('ipv4first');
+    expect(consoleWarnSpy).not.toHaveBeenCalled();
+  });
+
+  it('should return the default "ipv4first" and log a warning for an invalid string', () => {
+    expect(validateDnsResolutionOrder('invalid-value')).toBe('ipv4first');
+    expect(consoleWarnSpy).toHaveBeenCalledOnce();
+    expect(consoleWarnSpy).toHaveBeenCalledWith(
+      'Invalid value for dnsResolutionOrder in settings: "invalid-value". Using default "ipv4first".',
+    );
+  });
+});

packages/cli/src/gemini.tsx

@@ -12,9 +12,11 @@ import { readStdin } from './utils/readStdin.js';
 import { basename } from 'node:path';
 import v8 from 'node:v8';
 import os from 'node:os';
+import dns from 'node:dns';
 import { spawn } from 'node:child_process';
 import { start_sandbox } from './utils/sandbox.js';
 import {
+  DnsResolutionOrder,
   LoadedSettings,
   loadSettings,
   SettingScope,
@@ -40,8 +42,27 @@ import {
 import { validateAuthMethod } from './config/auth.js';
 import { setMaxSizedBoxDebugging } from './ui/components/shared/MaxSizedBox.js';
 import { validateNonInteractiveAuth } from './validateNonInterActiveAuth.js';
+import { checkForUpdates } from './ui/utils/updateCheck.js';
+import { handleAutoUpdate } from './utils/handleAutoUpdate.js';
 import { appEvents, AppEvent } from './utils/events.js';
 
+export function validateDnsResolutionOrder(
+  order: string | undefined,
+): DnsResolutionOrder {
+  const defaultValue: DnsResolutionOrder = 'ipv4first';
+  if (order === undefined) {
+    return defaultValue;
+  }
+  if (order === 'ipv4first' || order === 'verbatim') {
+    return order;
+  }
+  // We don't want to throw here, just warn and use the default.
+  console.warn(
+    `Invalid value for dnsResolutionOrder in settings: "${order}". Using default "${defaultValue}".`,
+  );
+  return defaultValue;
+}
+
 function getNodeMemoryArgs(config: Config): string[] {
   const totalMemoryMB = os.totalmem() / (1024 * 1024);
   const heapStats = v8.getHeapStatistics();
@@ -136,6 +157,10 @@ export async function main() {
     argv,
   );
 
+  dns.setDefaultResultOrder(
+    validateDnsResolutionOrder(settings.merged.dnsResolutionOrder),
+  );
+
   if (argv.promptInteractive && !process.stdin.isTTY) {
     console.error(
       'Error: The --prompt-interactive flag is not supported when piping input from stdin.',
@@ -184,7 +209,10 @@ export async function main() {
       : [];
     const sandboxConfig = config.getSandbox();
     if (sandboxConfig) {
-      if (settings.merged.selectedAuthType) {
+      if (
+        settings.merged.selectedAuthType &&
+        !settings.merged.useExternalAuth
+      ) {
         // Validate authentication here because the sandbox will interfere with the Oauth2 web redirect.
         try {
           const err = validateAuthMethod(settings.merged.selectedAuthType);
@@ -197,7 +225,7 @@ export async function main() {
           process.exit(1);
         }
       }
-      await start_sandbox(sandboxConfig, memoryArgs);
+      await start_sandbox(sandboxConfig, memoryArgs, config);
       process.exit(0);
     } else {
       // Not in a sandbox and not entering one, so relaunch with additional
@@ -246,6 +274,17 @@ export async function main() {
       { exitOnCtrlC: false },
     );
 
+    checkForUpdates()
+      .then((info) => {
+        handleAutoUpdate(info, settings, config.getProjectRoot());
+      })
+      .catch((err) => {
+        // Silently ignore update check errors.
+        if (config.getDebugMode()) {
+          console.error('Update check failed:', err);
+        }
+      });
+
     registerCleanup(() => instance.unmount());
     return;
   }
@@ -331,6 +370,7 @@ async function loadNonInteractiveConfig(
 
   return await validateNonInteractiveAuth(
     settings.merged.selectedAuthType,
+    settings.merged.useExternalAuth,
     finalConfig,
   );
 }

packages/cli/src/nonInteractiveCli.test.ts

@@ -4,196 +4,170 @@
  * SPDX-License-Identifier: Apache-2.0
  */
 
-/* eslint-disable @typescript-eslint/no-explicit-any */
-import { describe, it, expect, vi, beforeEach, afterEach } from 'vitest';
+import {
+  Config,
+  executeToolCall,
+  ToolRegistry,
+  ToolErrorType,
+  shutdownTelemetry,
+  GeminiEventType,
+  ServerGeminiStreamEvent,
+} from '@qwen-code/qwen-code-core';
+import { Part } from '@google/genai';
 import { runNonInteractive } from './nonInteractiveCli.js';
-import { Config, GeminiClient, ToolRegistry } from '@qwen-code/qwen-code-core';
-import { GenerateContentResponse, Part, FunctionCall } from '@google/genai';
+import { vi } from 'vitest';
 
-// Mock dependencies
-vi.mock('@qwen-code/qwen-code-core', async () => {
-  const actualCore = await vi.importActual<
-    typeof import('@qwen-code/qwen-code-core')
-  >('@qwen-code/qwen-code-core');
+// Mock core modules
+vi.mock('@qwen-code/qwen-code-core', async (importOriginal) => {
+  const original =
+    await importOriginal<typeof import('@qwen-code/qwen-code-core')>();
   return {
-    ...actualCore,
-    GeminiClient: vi.fn(),
-    ToolRegistry: vi.fn(),
+    ...original,
     executeToolCall: vi.fn(),
+    shutdownTelemetry: vi.fn(),
+    isTelemetrySdkInitialized: vi.fn().mockReturnValue(true),
   };
 });
 
 describe('runNonInteractive', () => {
   let mockConfig: Config;
-  let mockGeminiClient: GeminiClient;
   let mockToolRegistry: ToolRegistry;
-  let mockChat: {
-    sendMessageStream: ReturnType<typeof vi.fn>;
+  let mockCoreExecuteToolCall: vi.Mock;
+  let mockShutdownTelemetry: vi.Mock;
+  let consoleErrorSpy: vi.SpyInstance;
+  let processExitSpy: vi.SpyInstance;
+  let processStdoutSpy: vi.SpyInstance;
+  let mockGeminiClient: {
+    sendMessageStream: vi.Mock;
   };
-  let mockProcessStdoutWrite: ReturnType<typeof vi.fn>;
-  let mockProcessExit: ReturnType<typeof vi.fn>;
 
   beforeEach(() => {
-    vi.resetAllMocks();
-    mockChat = {
-      sendMessageStream: vi.fn(),
-    };
-    mockGeminiClient = {
-      getChat: vi.fn().mockResolvedValue(mockChat),
-    } as unknown as GeminiClient;
+    mockCoreExecuteToolCall = vi.mocked(executeToolCall);
+    mockShutdownTelemetry = vi.mocked(shutdownTelemetry);
+
+    consoleErrorSpy = vi.spyOn(console, 'error').mockImplementation(() => {});
+    processExitSpy = vi
+      .spyOn(process, 'exit')
+      .mockImplementation((() => {}) as (code?: number) => never);
+    processStdoutSpy = vi
+      .spyOn(process.stdout, 'write')
+      .mockImplementation(() => true);
+
     mockToolRegistry = {
-      getFunctionDeclarations: vi.fn().mockReturnValue([]),
       getTool: vi.fn(),
+      getFunctionDeclarations: vi.fn().mockReturnValue([]),
     } as unknown as ToolRegistry;
 
-    vi.mocked(GeminiClient).mockImplementation(() => mockGeminiClient);
-    vi.mocked(ToolRegistry).mockImplementation(() => mockToolRegistry);
+    mockGeminiClient = {
+      sendMessageStream: vi.fn(),
+    };
 
     mockConfig = {
-      getToolRegistry: vi.fn().mockReturnValue(mockToolRegistry),
+      initialize: vi.fn().mockResolvedValue(undefined),
       getGeminiClient: vi.fn().mockReturnValue(mockGeminiClient),
-      getContentGeneratorConfig: vi.fn().mockReturnValue({}),
+      getToolRegistry: vi.fn().mockResolvedValue(mockToolRegistry),
       getMaxSessionTurns: vi.fn().mockReturnValue(10),
-      initialize: vi.fn(),
+      getIdeMode: vi.fn().mockReturnValue(false),
+      getFullContext: vi.fn().mockReturnValue(false),
+      getContentGeneratorConfig: vi.fn().mockReturnValue({}),
+      getDebugMode: vi.fn().mockReturnValue(false),
     } as unknown as Config;
-
-    mockProcessStdoutWrite = vi.fn().mockImplementation(() => true);
-    process.stdout.write = mockProcessStdoutWrite as any; // Use any to bypass strict signature matching for mock
-    mockProcessExit = vi
-      .fn()
-      .mockImplementation((_code?: number) => undefined as never);
-    process.exit = mockProcessExit as any; // Use any for process.exit mock
   });
 
   afterEach(() => {
     vi.restoreAllMocks();
-    // Restore original process methods if they were globally patched
-    // This might require storing the original methods before patching them in beforeEach
   });
 
+  async function* createStreamFromEvents(
+    events: ServerGeminiStreamEvent[],
+  ): AsyncGenerator<ServerGeminiStreamEvent> {
+    for (const event of events) {
+      yield event;
+    }
+  }
+
   it('should process input and write text output', async () => {
-    const inputStream = (async function* () {
-      yield {
-        candidates: [{ content: { parts: [{ text: 'Hello' }] } }],
-      } as GenerateContentResponse;
-      yield {
-        candidates: [{ content: { parts: [{ text: ' World' }] } }],
-      } as GenerateContentResponse;
-    })();
-    mockChat.sendMessageStream.mockResolvedValue(inputStream);
+    const events: ServerGeminiStreamEvent[] = [
+      { type: GeminiEventType.Content, value: 'Hello' },
+      { type: GeminiEventType.Content, value: ' World' },
+    ];
+    mockGeminiClient.sendMessageStream.mockReturnValue(
+      createStreamFromEvents(events),
+    );
 
     await runNonInteractive(mockConfig, 'Test input', 'prompt-id-1');
 
-    expect(mockChat.sendMessageStream).toHaveBeenCalledWith(
-      {
-        message: [{ text: 'Test input' }],
-        config: {
-          abortSignal: expect.any(AbortSignal),
-          tools: [{ functionDeclarations: [] }],
-        },
-      },
-      expect.any(String),
+    expect(mockGeminiClient.sendMessageStream).toHaveBeenCalledWith(
+      [{ text: 'Test input' }],
+      expect.any(AbortSignal),
+      'prompt-id-1',
     );
-    expect(mockProcessStdoutWrite).toHaveBeenCalledWith('Hello');
-    expect(mockProcessStdoutWrite).toHaveBeenCalledWith(' World');
-    expect(mockProcessStdoutWrite).toHaveBeenCalledWith('\n');
+    expect(processStdoutSpy).toHaveBeenCalledWith('Hello');
+    expect(processStdoutSpy).toHaveBeenCalledWith(' World');
+    expect(processStdoutSpy).toHaveBeenCalledWith('\n');
+    expect(mockShutdownTelemetry).toHaveBeenCalled();
   });
 
   it('should handle a single tool call and respond', async () => {
-    const functionCall: FunctionCall = {
-      id: 'fc1',
-      name: 'testTool',
-      args: { p: 'v' },
-    };
-    const toolResponsePart: Part = {
-      functionResponse: {
+    const toolCallEvent: ServerGeminiStreamEvent = {
+      type: GeminiEventType.ToolCallRequest,
+      value: {
+        callId: 'tool-1',
         name: 'testTool',
-        id: 'fc1',
-        response: { result: 'tool success' },
+        args: { arg1: 'value1' },
+        isClientInitiated: false,
+        prompt_id: 'prompt-id-2',
       },
     };
+    const toolResponse: Part[] = [{ text: 'Tool response' }];
+    mockCoreExecuteToolCall.mockResolvedValue({ responseParts: toolResponse });
 
-    const { executeToolCall: mockCoreExecuteToolCall } = await import(
-      '@qwen-code/qwen-code-core'
-    );
-    vi.mocked(mockCoreExecuteToolCall).mockResolvedValue({
-      callId: 'fc1',
-      responseParts: [toolResponsePart],
-      resultDisplay: 'Tool success display',
-      error: undefined,
-    });
+    const firstCallEvents: ServerGeminiStreamEvent[] = [toolCallEvent];
+    const secondCallEvents: ServerGeminiStreamEvent[] = [
+      { type: GeminiEventType.Content, value: 'Final answer' },
+    ];
 
-    const stream1 = (async function* () {
-      yield { functionCalls: [functionCall] } as GenerateContentResponse;
-    })();
-    const stream2 = (async function* () {
-      yield {
-        candidates: [{ content: { parts: [{ text: 'Final answer' }] } }],
-      } as GenerateContentResponse;
-    })();
-    mockChat.sendMessageStream
-      .mockResolvedValueOnce(stream1)
-      .mockResolvedValueOnce(stream2);
+    mockGeminiClient.sendMessageStream
+      .mockReturnValueOnce(createStreamFromEvents(firstCallEvents))
+      .mockReturnValueOnce(createStreamFromEvents(secondCallEvents));
 
     await runNonInteractive(mockConfig, 'Use a tool', 'prompt-id-2');
 
-    expect(mockChat.sendMessageStream).toHaveBeenCalledTimes(2);
+    expect(mockGeminiClient.sendMessageStream).toHaveBeenCalledTimes(2);
     expect(mockCoreExecuteToolCall).toHaveBeenCalledWith(
       mockConfig,
-      expect.objectContaining({ callId: 'fc1', name: 'testTool' }),
+      expect.objectContaining({ name: 'testTool' }),
       mockToolRegistry,
       expect.any(AbortSignal),
     );
-    expect(mockChat.sendMessageStream).toHaveBeenLastCalledWith(
-      expect.objectContaining({
-        message: [toolResponsePart],
-      }),
-      expect.any(String),
+    expect(mockGeminiClient.sendMessageStream).toHaveBeenNthCalledWith(
+      2,
+      [{ text: 'Tool response' }],
+      expect.any(AbortSignal),
+      'prompt-id-2',
     );
-    expect(mockProcessStdoutWrite).toHaveBeenCalledWith('Final answer');
+    expect(processStdoutSpy).toHaveBeenCalledWith('Final answer');
+    expect(processStdoutSpy).toHaveBeenCalledWith('\n');
   });
 
   it('should handle error during tool execution', async () => {
-    const functionCall: FunctionCall = {
-      id: 'fcError',
-      name: 'errorTool',
-      args: {},
-    };
-    const errorResponsePart: Part = {
-      functionResponse: {
+    const toolCallEvent: ServerGeminiStreamEvent = {
+      type: GeminiEventType.ToolCallRequest,
+      value: {
+        callId: 'tool-1',
         name: 'errorTool',
-        id: 'fcError',
-        response: { error: 'Tool failed' },
+        args: {},
+        isClientInitiated: false,
+        prompt_id: 'prompt-id-3',
       },
     };
-
-    const { executeToolCall: mockCoreExecuteToolCall } = await import(
-      '@qwen-code/qwen-code-core'
-    );
-    vi.mocked(mockCoreExecuteToolCall).mockResolvedValue({
-      callId: 'fcError',
-      responseParts: [errorResponsePart],
-      resultDisplay: 'Tool execution failed badly',
-      error: new Error('Tool failed'),
+    mockCoreExecuteToolCall.mockResolvedValue({
+      error: new Error('Tool execution failed badly'),
+      errorType: ToolErrorType.UNHANDLED_EXCEPTION,
     });
-
-    const stream1 = (async function* () {
-      yield { functionCalls: [functionCall] } as GenerateContentResponse;
-    })();
-
-    const stream2 = (async function* () {
-      yield {
-        candidates: [
-          { content: { parts: [{ text: 'Could not complete request.' }] } },
-        ],
-      } as GenerateContentResponse;
-    })();
-    mockChat.sendMessageStream
-      .mockResolvedValueOnce(stream1)
-      .mockResolvedValueOnce(stream2);
-    const consoleErrorSpy = vi
-      .spyOn(console, 'error')
-      .mockImplementation(() => {});
+    mockGeminiClient.sendMessageStream.mockReturnValue(
+      createStreamFromEvents([toolCallEvent]),
+    );
 
     await runNonInteractive(mockConfig, 'Trigger tool error', 'prompt-id-3');
 
@@ -201,75 +175,48 @@ describe('runNonInteractive', () => {
     expect(consoleErrorSpy).toHaveBeenCalledWith(
       'Error executing tool errorTool: Tool execution failed badly',
     );
-    expect(mockChat.sendMessageStream).toHaveBeenLastCalledWith(
-      expect.objectContaining({
-        message: [errorResponsePart],
-      }),
-      expect.any(String),
-    );
-    expect(mockProcessStdoutWrite).toHaveBeenCalledWith(
-      'Could not complete request.',
-    );
+    expect(processExitSpy).toHaveBeenCalledWith(1);
   });
 
   it('should exit with error if sendMessageStream throws initially', async () => {
     const apiError = new Error('API connection failed');
-    mockChat.sendMessageStream.mockRejectedValue(apiError);
-    const consoleErrorSpy = vi
-      .spyOn(console, 'error')
-      .mockImplementation(() => {});
+    mockGeminiClient.sendMessageStream.mockImplementation(() => {
+      throw apiError;
+    });
 
     await runNonInteractive(mockConfig, 'Initial fail', 'prompt-id-4');
 
     expect(consoleErrorSpy).toHaveBeenCalledWith(
       '[API Error: API connection failed]',
     );
+    expect(processExitSpy).toHaveBeenCalledWith(1);
   });
 
   it('should not exit if a tool is not found, and should send error back to model', async () => {
-    const functionCall: FunctionCall = {
-      id: 'fcNotFound',
-      name: 'nonexistentTool',
-      args: {},
-    };
-    const errorResponsePart: Part = {
-      functionResponse: {
+    const toolCallEvent: ServerGeminiStreamEvent = {
+      type: GeminiEventType.ToolCallRequest,
+      value: {
+        callId: 'tool-1',
         name: 'nonexistentTool',
-        id: 'fcNotFound',
-        response: { error: 'Tool "nonexistentTool" not found in registry.' },
+        args: {},
+        isClientInitiated: false,
+        prompt_id: 'prompt-id-5',
       },
     };
-
-    const { executeToolCall: mockCoreExecuteToolCall } = await import(
-      '@qwen-code/qwen-code-core'
-    );
-    vi.mocked(mockCoreExecuteToolCall).mockResolvedValue({
-      callId: 'fcNotFound',
-      responseParts: [errorResponsePart],
-      resultDisplay: 'Tool "nonexistentTool" not found in registry.',
+    mockCoreExecuteToolCall.mockResolvedValue({
       error: new Error('Tool "nonexistentTool" not found in registry.'),
+      resultDisplay: 'Tool "nonexistentTool" not found in registry.',
     });
+    const finalResponse: ServerGeminiStreamEvent[] = [
+      {
+        type: GeminiEventType.Content,
+        value: "Sorry, I can't find that tool.",
+      },
+    ];
 
-    const stream1 = (async function* () {
-      yield { functionCalls: [functionCall] } as GenerateContentResponse;
-    })();
-    const stream2 = (async function* () {
-      yield {
-        candidates: [
-          {
-            content: {
-              parts: [{ text: 'Unfortunately the tool does not exist.' }],
-            },
-          },
-        ],
-      } as GenerateContentResponse;
-    })();
-    mockChat.sendMessageStream
-      .mockResolvedValueOnce(stream1)
-      .mockResolvedValueOnce(stream2);
-    const consoleErrorSpy = vi
-      .spyOn(console, 'error')
-      .mockImplementation(() => {});
+    mockGeminiClient.sendMessageStream
+      .mockReturnValueOnce(createStreamFromEvents([toolCallEvent]))
+      .mockReturnValueOnce(createStreamFromEvents(finalResponse));
 
     await runNonInteractive(
       mockConfig,
@@ -277,68 +224,22 @@ describe('runNonInteractive', () => {
       'prompt-id-5',
     );
 
+    expect(mockCoreExecuteToolCall).toHaveBeenCalled();
     expect(consoleErrorSpy).toHaveBeenCalledWith(
       'Error executing tool nonexistentTool: Tool "nonexistentTool" not found in registry.',
     );
-
-    expect(mockProcessExit).not.toHaveBeenCalled();
-
-    expect(mockChat.sendMessageStream).toHaveBeenCalledTimes(2);
-    expect(mockChat.sendMessageStream).toHaveBeenLastCalledWith(
-      expect.objectContaining({
-        message: [errorResponsePart],
-      }),
-      expect.any(String),
-    );
-
-    expect(mockProcessStdoutWrite).toHaveBeenCalledWith(
-      'Unfortunately the tool does not exist.',
+    expect(processExitSpy).not.toHaveBeenCalled();
+    expect(mockGeminiClient.sendMessageStream).toHaveBeenCalledTimes(2);
+    expect(processStdoutSpy).toHaveBeenCalledWith(
+      "Sorry, I can't find that tool.",
     );
   });
 
   it('should exit when max session turns are exceeded', async () => {
-    const functionCall: FunctionCall = {
-      id: 'fcLoop',
-      name: 'loopTool',
-      args: {},
-    };
-    const toolResponsePart: Part = {
-      functionResponse: {
-        name: 'loopTool',
-        id: 'fcLoop',
-        response: { result: 'still looping' },
-      },
-    };
-
-    // Config with a max turn of 1
-    vi.mocked(mockConfig.getMaxSessionTurns).mockReturnValue(1);
-
-    const { executeToolCall: mockCoreExecuteToolCall } = await import(
-      '@qwen-code/qwen-code-core'
-    );
-    vi.mocked(mockCoreExecuteToolCall).mockResolvedValue({
-      callId: 'fcLoop',
-      responseParts: [toolResponsePart],
-      resultDisplay: 'Still looping',
-      error: undefined,
-    });
-
-    const stream = (async function* () {
-      yield { functionCalls: [functionCall] } as GenerateContentResponse;
-    })();
-
-    mockChat.sendMessageStream.mockResolvedValue(stream);
-    const consoleErrorSpy = vi
-      .spyOn(console, 'error')
-      .mockImplementation(() => {});
-
-    await runNonInteractive(mockConfig, 'Trigger loop');
-
-    expect(mockChat.sendMessageStream).toHaveBeenCalledTimes(1);
+    vi.mocked(mockConfig.getMaxSessionTurns).mockReturnValue(0);
+    await runNonInteractive(mockConfig, 'Trigger loop', 'prompt-id-6');
     expect(consoleErrorSpy).toHaveBeenCalledWith(
-      `
- Reached max session turns for this session. Increase the number of turns by specifying maxSessionTurns in settings.json.`,
+      '\n Reached max session turns for this session. Increase the number of turns by specifying maxSessionTurns in settings.json.',
     );
-    expect(mockProcessExit).not.toHaveBeenCalled();
   });
 });

packages/cli/src/nonInteractiveCli.ts

@@ -11,64 +11,47 @@ import {
   ToolRegistry,
   shutdownTelemetry,
   isTelemetrySdkInitialized,
+  GeminiEventType,
+  ToolErrorType,
 } from '@qwen-code/qwen-code-core';
-import {
-  Content,
-  Part,
-  FunctionCall,
-  GenerateContentResponse,
-} from '@google/genai';
+import { Content, Part, FunctionCall } from '@google/genai';
 
 import { parseAndFormatApiError } from './ui/utils/errorParsing.js';
-
-function getResponseText(response: GenerateContentResponse): string | null {
-  if (response.candidates && response.candidates.length > 0) {
-    const candidate = response.candidates[0];
-    if (
-      candidate.content &&
-      candidate.content.parts &&
-      candidate.content.parts.length > 0
-    ) {
-      // We are running in headless mode so we don't need to return thoughts to STDOUT.
-      const thoughtPart = candidate.content.parts[0];
-      if (thoughtPart?.thought) {
-        return null;
-      }
-      return candidate.content.parts
-        .filter((part) => part.text)
-        .map((part) => part.text)
-        .join('');
-    }
-  }
-  return null;
-}
+import { ConsolePatcher } from './ui/utils/ConsolePatcher.js';
 
 export async function runNonInteractive(
   config: Config,
   input: string,
   prompt_id: string,
 ): Promise<void> {
-  await config.initialize();
-  // Handle EPIPE errors when the output is piped to a command that closes early.
-  process.stdout.on('error', (err: NodeJS.ErrnoException) => {
-    if (err.code === 'EPIPE') {
-      // Exit gracefully if the pipe is closed.
-      process.exit(0);
-    }
+  const consolePatcher = new ConsolePatcher({
+    stderr: true,
+    debugMode: config.getDebugMode(),
   });
 
-  const geminiClient = config.getGeminiClient();
-  const toolRegistry: ToolRegistry = await config.getToolRegistry();
-
-  const chat = await geminiClient.getChat();
-  const abortController = new AbortController();
-  let currentMessages: Content[] = [{ role: 'user', parts: [{ text: input }] }];
-  let turnCount = 0;
   try {
+    await config.initialize();
+    consolePatcher.patch();
+    // Handle EPIPE errors when the output is piped to a command that closes early.
+    process.stdout.on('error', (err: NodeJS.ErrnoException) => {
+      if (err.code === 'EPIPE') {
+        // Exit gracefully if the pipe is closed.
+        process.exit(0);
+      }
+    });
+
+    const geminiClient = config.getGeminiClient();
+    const toolRegistry: ToolRegistry = await config.getToolRegistry();
+
+    const abortController = new AbortController();
+    let currentMessages: Content[] = [
+      { role: 'user', parts: [{ text: input }] },
+    ];
+    let turnCount = 0;
     while (true) {
       turnCount++;
       if (
-        config.getMaxSessionTurns() > 0 &&
+        config.getMaxSessionTurns() >= 0 &&
         turnCount > config.getMaxSessionTurns()
       ) {
         console.error(
@@ -78,30 +61,28 @@ export async function runNonInteractive(
       }
       const functionCalls: FunctionCall[] = [];
 
-      const responseStream = await chat.sendMessageStream(
-        {
-          message: currentMessages[0]?.parts || [], // Ensure parts are always provided
-          config: {
-            abortSignal: abortController.signal,
-            tools: [
-              { functionDeclarations: toolRegistry.getFunctionDeclarations() },
-            ],
-          },
-        },
+      const responseStream = geminiClient.sendMessageStream(
+        currentMessages[0]?.parts || [],
+        abortController.signal,
         prompt_id,
       );
 
-      for await (const resp of responseStream) {
+      for await (const event of responseStream) {
         if (abortController.signal.aborted) {
           console.error('Operation cancelled.');
           return;
         }
-        const textPart = getResponseText(resp);
-        if (textPart) {
-          process.stdout.write(textPart);
-        }
-        if (resp.functionCalls) {
-          functionCalls.push(...resp.functionCalls);
+
+        if (event.type === GeminiEventType.Content) {
+          process.stdout.write(event.value);
+        } else if (event.type === GeminiEventType.ToolCallRequest) {
+          const toolCallRequest = event.value;
+          const fc: FunctionCall = {
+            name: toolCallRequest.name,
+            args: toolCallRequest.args,
+            id: toolCallRequest.callId,
+          };
+          functionCalls.push(fc);
         }
       }
 
@@ -126,15 +107,11 @@ export async function runNonInteractive(
           );
 
           if (toolResponse.error) {
-            const isToolNotFound = toolResponse.error.message.includes(
-              'not found in registry',
-            );
             console.error(
               `Error executing tool ${fc.name}: ${toolResponse.resultDisplay || toolResponse.error.message}`,
             );
-            if (!isToolNotFound) {
+            if (toolResponse.errorType === ToolErrorType.UNHANDLED_EXCEPTION)
               process.exit(1);
-            }
           }
 
           if (toolResponse.responseParts) {
@@ -165,6 +142,7 @@ export async function runNonInteractive(
     );
     process.exit(1);
   } finally {
+    consolePatcher.cleanup();
     if (isTelemetrySdkInitialized()) {
       await shutdownTelemetry();
     }

packages/cli/src/services/BuiltinCommandLoader.ts

@@ -16,10 +16,12 @@ import { compressCommand } from '../ui/commands/compressCommand.js';
 import { copyCommand } from '../ui/commands/copyCommand.js';
 import { corgiCommand } from '../ui/commands/corgiCommand.js';
 import { docsCommand } from '../ui/commands/docsCommand.js';
+import { directoryCommand } from '../ui/commands/directoryCommand.js';
 import { editorCommand } from '../ui/commands/editorCommand.js';
 import { extensionsCommand } from '../ui/commands/extensionsCommand.js';
 import { helpCommand } from '../ui/commands/helpCommand.js';
 import { ideCommand } from '../ui/commands/ideCommand.js';
+import { initCommand } from '../ui/commands/initCommand.js';
 import { mcpCommand } from '../ui/commands/mcpCommand.js';
 import { memoryCommand } from '../ui/commands/memoryCommand.js';
 import { privacyCommand } from '../ui/commands/privacyCommand.js';
@@ -29,6 +31,8 @@ import { statsCommand } from '../ui/commands/statsCommand.js';
 import { themeCommand } from '../ui/commands/themeCommand.js';
 import { toolsCommand } from '../ui/commands/toolsCommand.js';
 import { vimCommand } from '../ui/commands/vimCommand.js';
+import { setupGithubCommand } from '../ui/commands/setupGithubCommand.js';
+import { isGitHubRepository } from '../utils/gitUtils.js';
 
 /**
  * Loads the core, hard-coded slash commands that are an integral part
@@ -55,19 +59,22 @@ export class BuiltinCommandLoader implements ICommandLoader {
       copyCommand,
       corgiCommand,
       docsCommand,
+      directoryCommand,
       editorCommand,
       extensionsCommand,
       helpCommand,
       ideCommand(this.config),
+      initCommand,
+      mcpCommand,
       memoryCommand,
       privacyCommand,
-      mcpCommand,
       quitCommand,
       restoreCommand(this.config),
       statsCommand,
       themeCommand,
       toolsCommand,
       vimCommand,
+      ...(isGitHubRepository() ? [setupGithubCommand] : []),
     ];
 
     return allDefinitions.filter((cmd): cmd is SlashCommand => cmd !== null);

packages/cli/src/services/CommandService.test.ts

@@ -177,4 +177,176 @@ describe('CommandService', () => {
     expect(loader2.loadCommands).toHaveBeenCalledTimes(1);
     expect(loader2.loadCommands).toHaveBeenCalledWith(signal);
   });
+
+  it('should rename extension commands when they conflict', async () => {
+    const builtinCommand = createMockCommand('deploy', CommandKind.BUILT_IN);
+    const userCommand = createMockCommand('sync', CommandKind.FILE);
+    const extensionCommand1 = {
+      ...createMockCommand('deploy', CommandKind.FILE),
+      extensionName: 'firebase',
+      description: '[firebase] Deploy to Firebase',
+    };
+    const extensionCommand2 = {
+      ...createMockCommand('sync', CommandKind.FILE),
+      extensionName: 'git-helper',
+      description: '[git-helper] Sync with remote',
+    };
+
+    const mockLoader1 = new MockCommandLoader([builtinCommand]);
+    const mockLoader2 = new MockCommandLoader([
+      userCommand,
+      extensionCommand1,
+      extensionCommand2,
+    ]);
+
+    const service = await CommandService.create(
+      [mockLoader1, mockLoader2],
+      new AbortController().signal,
+    );
+
+    const commands = service.getCommands();
+    expect(commands).toHaveLength(4);
+
+    // Built-in command keeps original name
+    const deployBuiltin = commands.find(
+      (cmd) => cmd.name === 'deploy' && !cmd.extensionName,
+    );
+    expect(deployBuiltin).toBeDefined();
+    expect(deployBuiltin?.kind).toBe(CommandKind.BUILT_IN);
+
+    // Extension command conflicting with built-in gets renamed
+    const deployExtension = commands.find(
+      (cmd) => cmd.name === 'firebase.deploy',
+    );
+    expect(deployExtension).toBeDefined();
+    expect(deployExtension?.extensionName).toBe('firebase');
+
+    // User command keeps original name
+    const syncUser = commands.find(
+      (cmd) => cmd.name === 'sync' && !cmd.extensionName,
+    );
+    expect(syncUser).toBeDefined();
+    expect(syncUser?.kind).toBe(CommandKind.FILE);
+
+    // Extension command conflicting with user command gets renamed
+    const syncExtension = commands.find(
+      (cmd) => cmd.name === 'git-helper.sync',
+    );
+    expect(syncExtension).toBeDefined();
+    expect(syncExtension?.extensionName).toBe('git-helper');
+  });
+
+  it('should handle user/project command override correctly', async () => {
+    const builtinCommand = createMockCommand('help', CommandKind.BUILT_IN);
+    const userCommand = createMockCommand('help', CommandKind.FILE);
+    const projectCommand = createMockCommand('deploy', CommandKind.FILE);
+    const userDeployCommand = createMockCommand('deploy', CommandKind.FILE);
+
+    const mockLoader1 = new MockCommandLoader([builtinCommand]);
+    const mockLoader2 = new MockCommandLoader([
+      userCommand,
+      userDeployCommand,
+      projectCommand,
+    ]);
+
+    const service = await CommandService.create(
+      [mockLoader1, mockLoader2],
+      new AbortController().signal,
+    );
+
+    const commands = service.getCommands();
+    expect(commands).toHaveLength(2);
+
+    // User command overrides built-in
+    const helpCommand = commands.find((cmd) => cmd.name === 'help');
+    expect(helpCommand).toBeDefined();
+    expect(helpCommand?.kind).toBe(CommandKind.FILE);
+
+    // Project command overrides user command (last wins)
+    const deployCommand = commands.find((cmd) => cmd.name === 'deploy');
+    expect(deployCommand).toBeDefined();
+    expect(deployCommand?.kind).toBe(CommandKind.FILE);
+  });
+
+  it('should handle secondary conflicts when renaming extension commands', async () => {
+    // User has both /deploy and /gcp.deploy commands
+    const userCommand1 = createMockCommand('deploy', CommandKind.FILE);
+    const userCommand2 = createMockCommand('gcp.deploy', CommandKind.FILE);
+
+    // Extension also has a deploy command that will conflict with user's /deploy
+    const extensionCommand = {
+      ...createMockCommand('deploy', CommandKind.FILE),
+      extensionName: 'gcp',
+      description: '[gcp] Deploy to Google Cloud',
+    };
+
+    const mockLoader = new MockCommandLoader([
+      userCommand1,
+      userCommand2,
+      extensionCommand,
+    ]);
+
+    const service = await CommandService.create(
+      [mockLoader],
+      new AbortController().signal,
+    );
+
+    const commands = service.getCommands();
+    expect(commands).toHaveLength(3);
+
+    // Original user command keeps its name
+    const deployUser = commands.find(
+      (cmd) => cmd.name === 'deploy' && !cmd.extensionName,
+    );
+    expect(deployUser).toBeDefined();
+
+    // User's dot notation command keeps its name
+    const gcpDeployUser = commands.find(
+      (cmd) => cmd.name === 'gcp.deploy' && !cmd.extensionName,
+    );
+    expect(gcpDeployUser).toBeDefined();
+
+    // Extension command gets renamed with suffix due to secondary conflict
+    const deployExtension = commands.find(
+      (cmd) => cmd.name === 'gcp.deploy1' && cmd.extensionName === 'gcp',
+    );
+    expect(deployExtension).toBeDefined();
+    expect(deployExtension?.description).toBe('[gcp] Deploy to Google Cloud');
+  });
+
+  it('should handle multiple secondary conflicts with incrementing suffixes', async () => {
+    // User has /deploy, /gcp.deploy, and /gcp.deploy1
+    const userCommand1 = createMockCommand('deploy', CommandKind.FILE);
+    const userCommand2 = createMockCommand('gcp.deploy', CommandKind.FILE);
+    const userCommand3 = createMockCommand('gcp.deploy1', CommandKind.FILE);
+
+    // Extension has a deploy command
+    const extensionCommand = {
+      ...createMockCommand('deploy', CommandKind.FILE),
+      extensionName: 'gcp',
+      description: '[gcp] Deploy to Google Cloud',
+    };
+
+    const mockLoader = new MockCommandLoader([
+      userCommand1,
+      userCommand2,
+      userCommand3,
+      extensionCommand,
+    ]);
+
+    const service = await CommandService.create(
+      [mockLoader],
+      new AbortController().signal,
+    );
+
+    const commands = service.getCommands();
+    expect(commands).toHaveLength(4);
+
+    // Extension command gets renamed with suffix 2 due to multiple conflicts
+    const deployExtension = commands.find(
+      (cmd) => cmd.name === 'gcp.deploy2' && cmd.extensionName === 'gcp',
+    );
+    expect(deployExtension).toBeDefined();
+    expect(deployExtension?.description).toBe('[gcp] Deploy to Google Cloud');
+  });
 });

packages/cli/src/services/CommandService.ts

@@ -30,13 +30,17 @@ export class CommandService {
    *
    * This factory method orchestrates the entire command loading process. It
    * runs all provided loaders in parallel, aggregates their results, handles
-   * name conflicts by letting the last-loaded command win, and then returns a
+   * name conflicts for extension commands by renaming them, and then returns a
    * fully constructed `CommandService` instance.
    *
+   * Conflict resolution:
+   * - Extension commands that conflict with existing commands are renamed to
+   *   `extensionName.commandName`
+   * - Non-extension commands (built-in, user, project) override earlier commands
+   *   with the same name based on loader order
+   *
    * @param loaders An array of objects that conform to the `ICommandLoader`
-   *   interface. The order of loaders is significant: if multiple loaders
-   *   provide a command with the same name, the command from the loader that
-   *   appears later in the array will take precedence.
+   *   interface. Built-in commands should come first, followed by FileCommandLoader.
    * @param signal An AbortSignal to cancel the loading process.
    * @returns A promise that resolves to a new, fully initialized `CommandService` instance.
    */
@@ -57,12 +61,28 @@ export class CommandService {
       }
     }
 
-    // De-duplicate commands using a Map. The last one found with a given name wins.
-    // This creates a natural override system based on the order of the loaders
-    // passed to the constructor.
     const commandMap = new Map<string, SlashCommand>();
     for (const cmd of allCommands) {
-      commandMap.set(cmd.name, cmd);
+      let finalName = cmd.name;
+
+      // Extension commands get renamed if they conflict with existing commands
+      if (cmd.extensionName && commandMap.has(cmd.name)) {
+        let renamedName = `${cmd.extensionName}.${cmd.name}`;
+        let suffix = 1;
+
+        // Keep trying until we find a name that doesn't conflict
+        while (commandMap.has(renamedName)) {
+          renamedName = `${cmd.extensionName}.${cmd.name}${suffix}`;
+          suffix++;
+        }
+
+        finalName = renamedName;
+      }
+
+      commandMap.set(finalName, {
+        ...cmd,
+        name: finalName,
+      });
     }
 
     const finalCommands = Object.freeze(Array.from(commandMap.values()));

packages/cli/src/services/FileCommandLoader.test.ts

@@ -4,13 +4,14 @@
  * SPDX-License-Identifier: Apache-2.0
  */
 
-import { FileCommandLoader } from './FileCommandLoader.js';
+import * as path from 'node:path';
 import {
   Config,
   getProjectCommandsDir,
   getUserCommandsDir,
 } from '@qwen-code/qwen-code-core';
 import mock from 'mock-fs';
+import { FileCommandLoader } from './FileCommandLoader.js';
 import { assert, vi } from 'vitest';
 import { createMockCommandContext } from '../test-utils/mockCommandContext.js';
 import {
@@ -85,7 +86,7 @@ describe('FileCommandLoader', () => {
       },
     });
 
-    const loader = new FileCommandLoader(null as unknown as Config);
+    const loader = new FileCommandLoader(null);
     const commands = await loader.loadCommands(signal);
 
     expect(commands).toHaveLength(1);
@@ -176,7 +177,7 @@ describe('FileCommandLoader', () => {
       },
     });
 
-    const loader = new FileCommandLoader(null as unknown as Config);
+    const loader = new FileCommandLoader(null);
     const commands = await loader.loadCommands(signal);
 
     expect(commands).toHaveLength(2);
@@ -194,9 +195,11 @@ describe('FileCommandLoader', () => {
         },
       },
     });
-    const loader = new FileCommandLoader({
-      getProjectRoot: () => '/path/to/project',
-    } as Config);
+    const mockConfig = {
+      getProjectRoot: vi.fn(() => '/path/to/project'),
+      getExtensions: vi.fn(() => []),
+    } as Config;
+    const loader = new FileCommandLoader(mockConfig);
     const commands = await loader.loadCommands(signal);
     expect(commands).toHaveLength(1);
     expect(commands[0]!.name).toBe('gcp:pipelines:run');
@@ -212,7 +215,7 @@ describe('FileCommandLoader', () => {
       },
     });
 
-    const loader = new FileCommandLoader(null as unknown as Config);
+    const loader = new FileCommandLoader(null);
     const commands = await loader.loadCommands(signal);
 
     expect(commands).toHaveLength(1);
@@ -221,7 +224,7 @@ describe('FileCommandLoader', () => {
     expect(command.name).toBe('git:commit');
   });
 
-  it('overrides user commands with project commands', async () => {
+  it('returns both user and project commands in order', async () => {
     const userCommandsDir = getUserCommandsDir();
     const projectCommandsDir = getProjectCommandsDir(process.cwd());
     mock({
@@ -233,16 +236,15 @@ describe('FileCommandLoader', () => {
       },
     });
 
-    const loader = new FileCommandLoader({
-      getProjectRoot: () => process.cwd(),
-    } as Config);
+    const mockConfig = {
+      getProjectRoot: vi.fn(() => process.cwd()),
+      getExtensions: vi.fn(() => []),
+    } as Config;
+    const loader = new FileCommandLoader(mockConfig);
     const commands = await loader.loadCommands(signal);
 
-    expect(commands).toHaveLength(1);
-    const command = commands[0];
-    expect(command).toBeDefined();
-
-    const result = await command.action?.(
+    expect(commands).toHaveLength(2);
+    const userResult = await commands[0].action?.(
       createMockCommandContext({
         invocation: {
           raw: '/test',
@@ -252,10 +254,25 @@ describe('FileCommandLoader', () => {
       }),
       '',
     );
-    if (result?.type === 'submit_prompt') {
-      expect(result.content).toBe('Project prompt');
+    if (userResult?.type === 'submit_prompt') {
+      expect(userResult.content).toBe('User prompt');
     } else {
-      assert.fail('Incorrect action type');
+      assert.fail('Incorrect action type for user command');
+    }
+    const projectResult = await commands[1].action?.(
+      createMockCommandContext({
+        invocation: {
+          raw: '/test',
+          name: 'test',
+          args: '',
+        },
+      }),
+      '',
+    );
+    if (projectResult?.type === 'submit_prompt') {
+      expect(projectResult.content).toBe('Project prompt');
+    } else {
+      assert.fail('Incorrect action type for project command');
     }
   });
 
@@ -268,7 +285,7 @@ describe('FileCommandLoader', () => {
       },
     });
 
-    const loader = new FileCommandLoader(null as unknown as Config);
+    const loader = new FileCommandLoader(null);
     const commands = await loader.loadCommands(signal);
 
     expect(commands).toHaveLength(1);
@@ -284,7 +301,7 @@ describe('FileCommandLoader', () => {
       },
     });
 
-    const loader = new FileCommandLoader(null as unknown as Config);
+    const loader = new FileCommandLoader(null);
     const commands = await loader.loadCommands(signal);
 
     expect(commands).toHaveLength(1);
@@ -299,7 +316,7 @@ describe('FileCommandLoader', () => {
       },
     });
 
-    const loader = new FileCommandLoader(null as unknown as Config);
+    const loader = new FileCommandLoader(null);
     const commands = await loader.loadCommands(signal);
     const command = commands[0];
     expect(command).toBeDefined();
@@ -308,7 +325,7 @@ describe('FileCommandLoader', () => {
 
   it('handles file system errors gracefully', async () => {
     mock({}); // Mock an empty file system
-    const loader = new FileCommandLoader(null as unknown as Config);
+    const loader = new FileCommandLoader(null);
     const commands = await loader.loadCommands(signal);
     expect(commands).toHaveLength(0);
   });
@@ -321,7 +338,7 @@ describe('FileCommandLoader', () => {
       },
     });
 
-    const loader = new FileCommandLoader(null as unknown as Config);
+    const loader = new FileCommandLoader(null);
     const commands = await loader.loadCommands(signal);
     const command = commands[0];
     expect(command).toBeDefined();
@@ -336,7 +353,7 @@ describe('FileCommandLoader', () => {
       },
     });
 
-    const loader = new FileCommandLoader(null as unknown as Config);
+    const loader = new FileCommandLoader(null);
     const commands = await loader.loadCommands(signal);
     const command = commands[0];
     expect(command).toBeDefined();
@@ -351,7 +368,7 @@ describe('FileCommandLoader', () => {
       },
     });
 
-    const loader = new FileCommandLoader(null as unknown as Config);
+    const loader = new FileCommandLoader(null);
     const commands = await loader.loadCommands(signal);
 
     expect(commands).toHaveLength(1);
@@ -362,6 +379,298 @@ describe('FileCommandLoader', () => {
     expect(command.name).toBe('legacy_command');
   });
 
+  describe('Extension Command Loading', () => {
+    it('loads commands from active extensions', async () => {
+      const userCommandsDir = getUserCommandsDir();
+      const projectCommandsDir = getProjectCommandsDir(process.cwd());
+      const extensionDir = path.join(
+        process.cwd(),
+        '.gemini/extensions/test-ext',
+      );
+
+      mock({
+        [userCommandsDir]: {
+          'user.toml': 'prompt = "User command"',
+        },
+        [projectCommandsDir]: {
+          'project.toml': 'prompt = "Project command"',
+        },
+        [extensionDir]: {
+          'gemini-extension.json': JSON.stringify({
+            name: 'test-ext',
+            version: '1.0.0',
+          }),
+          commands: {
+            'ext.toml': 'prompt = "Extension command"',
+          },
+        },
+      });
+
+      const mockConfig = {
+        getProjectRoot: vi.fn(() => process.cwd()),
+        getExtensions: vi.fn(() => [
+          {
+            name: 'test-ext',
+            version: '1.0.0',
+            isActive: true,
+            path: extensionDir,
+          },
+        ]),
+      } as Config;
+      const loader = new FileCommandLoader(mockConfig);
+      const commands = await loader.loadCommands(signal);
+
+      expect(commands).toHaveLength(3);
+      const commandNames = commands.map((cmd) => cmd.name);
+      expect(commandNames).toEqual(['user', 'project', 'ext']);
+
+      const extCommand = commands.find((cmd) => cmd.name === 'ext');
+      expect(extCommand?.extensionName).toBe('test-ext');
+      expect(extCommand?.description).toMatch(/^\[test-ext\]/);
+    });
+
+    it('extension commands have extensionName metadata for conflict resolution', async () => {
+      const userCommandsDir = getUserCommandsDir();
+      const projectCommandsDir = getProjectCommandsDir(process.cwd());
+      const extensionDir = path.join(
+        process.cwd(),
+        '.gemini/extensions/test-ext',
+      );
+
+      mock({
+        [extensionDir]: {
+          'gemini-extension.json': JSON.stringify({
+            name: 'test-ext',
+            version: '1.0.0',
+          }),
+          commands: {
+            'deploy.toml': 'prompt = "Extension deploy command"',
+          },
+        },
+        [userCommandsDir]: {
+          'deploy.toml': 'prompt = "User deploy command"',
+        },
+        [projectCommandsDir]: {
+          'deploy.toml': 'prompt = "Project deploy command"',
+        },
+      });
+
+      const mockConfig = {
+        getProjectRoot: vi.fn(() => process.cwd()),
+        getExtensions: vi.fn(() => [
+          {
+            name: 'test-ext',
+            version: '1.0.0',
+            isActive: true,
+            path: extensionDir,
+          },
+        ]),
+      } as Config;
+      const loader = new FileCommandLoader(mockConfig);
+      const commands = await loader.loadCommands(signal);
+
+      // Return all commands, even duplicates
+      expect(commands).toHaveLength(3);
+
+      expect(commands[0].name).toBe('deploy');
+      expect(commands[0].extensionName).toBeUndefined();
+      const result0 = await commands[0].action?.(
+        createMockCommandContext({
+          invocation: {
+            raw: '/deploy',
+            name: 'deploy',
+            args: '',
+          },
+        }),
+        '',
+      );
+      expect(result0?.type).toBe('submit_prompt');
+      if (result0?.type === 'submit_prompt') {
+        expect(result0.content).toBe('User deploy command');
+      }
+
+      expect(commands[1].name).toBe('deploy');
+      expect(commands[1].extensionName).toBeUndefined();
+      const result1 = await commands[1].action?.(
+        createMockCommandContext({
+          invocation: {
+            raw: '/deploy',
+            name: 'deploy',
+            args: '',
+          },
+        }),
+        '',
+      );
+      expect(result1?.type).toBe('submit_prompt');
+      if (result1?.type === 'submit_prompt') {
+        expect(result1.content).toBe('Project deploy command');
+      }
+
+      expect(commands[2].name).toBe('deploy');
+      expect(commands[2].extensionName).toBe('test-ext');
+      expect(commands[2].description).toMatch(/^\[test-ext\]/);
+      const result2 = await commands[2].action?.(
+        createMockCommandContext({
+          invocation: {
+            raw: '/deploy',
+            name: 'deploy',
+            args: '',
+          },
+        }),
+        '',
+      );
+      expect(result2?.type).toBe('submit_prompt');
+      if (result2?.type === 'submit_prompt') {
+        expect(result2.content).toBe('Extension deploy command');
+      }
+    });
+
+    it('only loads commands from active extensions', async () => {
+      const extensionDir1 = path.join(
+        process.cwd(),
+        '.gemini/extensions/active-ext',
+      );
+      const extensionDir2 = path.join(
+        process.cwd(),
+        '.gemini/extensions/inactive-ext',
+      );
+
+      mock({
+        [extensionDir1]: {
+          'gemini-extension.json': JSON.stringify({
+            name: 'active-ext',
+            version: '1.0.0',
+          }),
+          commands: {
+            'active.toml': 'prompt = "Active extension command"',
+          },
+        },
+        [extensionDir2]: {
+          'gemini-extension.json': JSON.stringify({
+            name: 'inactive-ext',
+            version: '1.0.0',
+          }),
+          commands: {
+            'inactive.toml': 'prompt = "Inactive extension command"',
+          },
+        },
+      });
+
+      const mockConfig = {
+        getProjectRoot: vi.fn(() => process.cwd()),
+        getExtensions: vi.fn(() => [
+          {
+            name: 'active-ext',
+            version: '1.0.0',
+            isActive: true,
+            path: extensionDir1,
+          },
+          {
+            name: 'inactive-ext',
+            version: '1.0.0',
+            isActive: false,
+            path: extensionDir2,
+          },
+        ]),
+      } as Config;
+      const loader = new FileCommandLoader(mockConfig);
+      const commands = await loader.loadCommands(signal);
+
+      expect(commands).toHaveLength(1);
+      expect(commands[0].name).toBe('active');
+      expect(commands[0].extensionName).toBe('active-ext');
+      expect(commands[0].description).toMatch(/^\[active-ext\]/);
+    });
+
+    it('handles missing extension commands directory gracefully', async () => {
+      const extensionDir = path.join(
+        process.cwd(),
+        '.gemini/extensions/no-commands',
+      );
+
+      mock({
+        [extensionDir]: {
+          'gemini-extension.json': JSON.stringify({
+            name: 'no-commands',
+            version: '1.0.0',
+          }),
+          // No commands directory
+        },
+      });
+
+      const mockConfig = {
+        getProjectRoot: vi.fn(() => process.cwd()),
+        getExtensions: vi.fn(() => [
+          {
+            name: 'no-commands',
+            version: '1.0.0',
+            isActive: true,
+            path: extensionDir,
+          },
+        ]),
+      } as Config;
+      const loader = new FileCommandLoader(mockConfig);
+      const commands = await loader.loadCommands(signal);
+      expect(commands).toHaveLength(0);
+    });
+
+    it('handles nested command structure in extensions', async () => {
+      const extensionDir = path.join(process.cwd(), '.gemini/extensions/a');
+
+      mock({
+        [extensionDir]: {
+          'gemini-extension.json': JSON.stringify({
+            name: 'a',
+            version: '1.0.0',
+          }),
+          commands: {
+            b: {
+              'c.toml': 'prompt = "Nested command from extension a"',
+              d: {
+                'e.toml': 'prompt = "Deeply nested command"',
+              },
+            },
+            'simple.toml': 'prompt = "Simple command"',
+          },
+        },
+      });
+
+      const mockConfig = {
+        getProjectRoot: vi.fn(() => process.cwd()),
+        getExtensions: vi.fn(() => [
+          { name: 'a', version: '1.0.0', isActive: true, path: extensionDir },
+        ]),
+      } as Config;
+      const loader = new FileCommandLoader(mockConfig);
+      const commands = await loader.loadCommands(signal);
+
+      expect(commands).toHaveLength(3);
+
+      const commandNames = commands.map((cmd) => cmd.name).sort();
+      expect(commandNames).toEqual(['b:c', 'b:d:e', 'simple']);
+
+      const nestedCmd = commands.find((cmd) => cmd.name === 'b:c');
+      expect(nestedCmd?.extensionName).toBe('a');
+      expect(nestedCmd?.description).toMatch(/^\[a\]/);
+      expect(nestedCmd).toBeDefined();
+      const result = await nestedCmd!.action?.(
+        createMockCommandContext({
+          invocation: {
+            raw: '/b:c',
+            name: 'b:c',
+            args: '',
+          },
+        }),
+        '',
+      );
+      if (result?.type === 'submit_prompt') {
+        expect(result.content).toBe('Nested command from extension a');
+      } else {
+        assert.fail('Incorrect action type');
+      }
+    });
+  });
+
   describe('Shorthand Argument Processor Integration', () => {
     it('correctly processes a command with {{args}}', async () => {
       const userCommandsDir = getUserCommandsDir();

packages/cli/src/services/FileCommandLoader.ts

@@ -35,6 +35,11 @@ import {
   ShellProcessor,
 } from './prompt-processors/shellProcessor.js';
 
+interface CommandDirectory {
+  path: string;
+  extensionName?: string;
+}
+
 /**
  * Defines the Zod schema for a command definition file. This serves as the
  * single source of truth for both validation and type inference.
@@ -65,13 +70,18 @@ export class FileCommandLoader implements ICommandLoader {
   }
 
   /**
-   * Loads all commands, applying the precedence rule where project-level
-   * commands override user-level commands with the same name.
+   * Loads all commands from user, project, and extension directories.
+   * Returns commands in order: user → project → extensions (alphabetically).
+   *
+   * Order is important for conflict resolution in CommandService:
+   * - User/project commands (without extensionName) use "last wins" strategy
+   * - Extension commands (with extensionName) get renamed if conflicts exist
+   *
    * @param signal An AbortSignal to cancel the loading process.
-   * @returns A promise that resolves to an array of loaded SlashCommands.
+   * @returns A promise that resolves to an array of all loaded SlashCommands.
    */
   async loadCommands(signal: AbortSignal): Promise<SlashCommand[]> {
-    const commandMap = new Map<string, SlashCommand>();
+    const allCommands: SlashCommand[] = [];
     const globOptions = {
       nodir: true,
       dot: true,
@@ -79,54 +89,85 @@ export class FileCommandLoader implements ICommandLoader {
       follow: true,
     };
 
-    try {
-      // User Commands
-      const userDir = getUserCommandsDir();
-      const userFiles = await glob('**/*.toml', {
-        ...globOptions,
-        cwd: userDir,
-      });
-      const userCommandPromises = userFiles.map((file) =>
-        this.parseAndAdaptFile(path.join(userDir, file), userDir),
-      );
-      const userCommands = (await Promise.all(userCommandPromises)).filter(
-        (cmd): cmd is SlashCommand => cmd !== null,
-      );
-      for (const cmd of userCommands) {
-        commandMap.set(cmd.name, cmd);
-      }
+    // Load commands from each directory
+    const commandDirs = this.getCommandDirectories();
+    for (const dirInfo of commandDirs) {
+      try {
+        const files = await glob('**/*.toml', {
+          ...globOptions,
+          cwd: dirInfo.path,
+        });
 
-      // Project Commands (these intentionally override user commands)
-      const projectDir = getProjectCommandsDir(this.projectRoot);
-      const projectFiles = await glob('**/*.toml', {
-        ...globOptions,
-        cwd: projectDir,
-      });
-      const projectCommandPromises = projectFiles.map((file) =>
-        this.parseAndAdaptFile(path.join(projectDir, file), projectDir),
-      );
-      const projectCommands = (
-        await Promise.all(projectCommandPromises)
-      ).filter((cmd): cmd is SlashCommand => cmd !== null);
-      for (const cmd of projectCommands) {
-        commandMap.set(cmd.name, cmd);
+        const commandPromises = files.map((file) =>
+          this.parseAndAdaptFile(
+            path.join(dirInfo.path, file),
+            dirInfo.path,
+            dirInfo.extensionName,
+          ),
+        );
+
+        const commands = (await Promise.all(commandPromises)).filter(
+          (cmd): cmd is SlashCommand => cmd !== null,
+        );
+
+        // Add all commands without deduplication
+        allCommands.push(...commands);
+      } catch (error) {
+        if ((error as NodeJS.ErrnoException).code !== 'ENOENT') {
+          console.error(
+            `[FileCommandLoader] Error loading commands from ${dirInfo.path}:`,
+            error,
+          );
+        }
       }
-    } catch (error) {
-      console.error(`[FileCommandLoader] Error during file search:`, error);
     }
 
-    return Array.from(commandMap.values());
+    return allCommands;
+  }
+
+  /**
+   * Get all command directories in order for loading.
+   * User commands → Project commands → Extension commands
+   * This order ensures extension commands can detect all conflicts.
+   */
+  private getCommandDirectories(): CommandDirectory[] {
+    const dirs: CommandDirectory[] = [];
+
+    // 1. User commands
+    dirs.push({ path: getUserCommandsDir() });
+
+    // 2. Project commands (override user commands)
+    dirs.push({ path: getProjectCommandsDir(this.projectRoot) });
+
+    // 3. Extension commands (processed last to detect all conflicts)
+    if (this.config) {
+      const activeExtensions = this.config
+        .getExtensions()
+        .filter((ext) => ext.isActive)
+        .sort((a, b) => a.name.localeCompare(b.name)); // Sort alphabetically for deterministic loading
+
+      const extensionCommandDirs = activeExtensions.map((ext) => ({
+        path: path.join(ext.path, 'commands'),
+        extensionName: ext.name,
+      }));
+
+      dirs.push(...extensionCommandDirs);
+    }
+
+    return dirs;
   }
 
   /**
    * Parses a single .toml file and transforms it into a SlashCommand object.
    * @param filePath The absolute path to the .toml file.
    * @param baseDir The root command directory for name calculation.
+   * @param extensionName Optional extension name to prefix commands with.
    * @returns A promise resolving to a SlashCommand, or null if the file is invalid.
    */
   private async parseAndAdaptFile(
     filePath: string,
     baseDir: string,
+    extensionName?: string,
   ): Promise<SlashCommand | null> {
     let fileContent: string;
     try {
@@ -167,7 +208,7 @@ export class FileCommandLoader implements ICommandLoader {
       0,
       relativePathWithExt.length - 5, // length of '.toml'
     );
-    const commandName = relativePath
+    const baseCommandName = relativePath
       .split(path.sep)
       // Sanitize each path segment to prevent ambiguity. Since ':' is our
       // namespace separator, we replace any literal colons in filenames
@@ -175,11 +216,18 @@ export class FileCommandLoader implements ICommandLoader {
       .map((segment) => segment.replaceAll(':', '_'))
       .join(':');
 
+    // Add extension name tag for extension commands
+    const defaultDescription = `Custom command from ${path.basename(filePath)}`;
+    let description = validDef.description || defaultDescription;
+    if (extensionName) {
+      description = `[${extensionName}] ${description}`;
+    }
+
     const processors: IPromptProcessor[] = [];
 
     // Add the Shell Processor if needed.
     if (validDef.prompt.includes(SHELL_INJECTION_TRIGGER)) {
-      processors.push(new ShellProcessor(commandName));
+      processors.push(new ShellProcessor(baseCommandName));
     }
 
     // The presence of '{{args}}' is the switch that determines the behavior.
@@ -190,18 +238,17 @@ export class FileCommandLoader implements ICommandLoader {
     }
 
     return {
-      name: commandName,
-      description:
-        validDef.description ||
-        `Custom command from ${path.basename(filePath)}`,
+      name: baseCommandName,
+      description,
       kind: CommandKind.FILE,
+      extensionName,
       action: async (
         context: CommandContext,
         _args: string,
       ): Promise<SlashCommandActionReturn> => {
         if (!context.invocation) {
           console.error(
-            `[FileCommandLoader] Critical error: Command '${commandName}' was executed without invocation context.`,
+            `[FileCommandLoader] Critical error: Command '${baseCommandName}' was executed without invocation context.`,
           );
           return {
             type: 'submit_prompt',

packages/cli/src/test-utils/customMatchers.ts

@@ -0,0 +1,63 @@
+/**
+ * @license
+ * Copyright 2025 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+/// <reference types="vitest/globals" />
+
+/**
+ * @license
+ * Copyright 2025 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+import { expect } from 'vitest';
+import type { TextBuffer } from '../ui/components/shared/text-buffer.js';
+
+// RegExp to detect invalid characters: backspace, and ANSI escape codes
+// eslint-disable-next-line no-control-regex
+const invalidCharsRegex = /[\b\x1b]/;
+
+function toHaveOnlyValidCharacters(this: vi.Assertion, buffer: TextBuffer) {
+  const { isNot } = this;
+  let pass = true;
+  const invalidLines: Array<{ line: number; content: string }> = [];
+
+  for (let i = 0; i < buffer.lines.length; i++) {
+    const line = buffer.lines[i];
+    if (line.includes('\n')) {
+      pass = false;
+      invalidLines.push({ line: i, content: line });
+      break; // Fail fast on newlines
+    }
+    if (invalidCharsRegex.test(line)) {
+      pass = false;
+      invalidLines.push({ line: i, content: line });
+    }
+  }
+
+  return {
+    pass,
+    message: () =>
+      `Expected buffer ${isNot ? 'not ' : ''}to have only valid characters, but found invalid characters in lines:\n${invalidLines
+        .map((l) => `  [${l.line}]: "${l.content}"`) /* This line was changed */
+        .join('\n')}`,
+    actual: buffer.lines,
+    expected: 'Lines with no line breaks, backspaces, or escape codes.',
+  };
+}
+
+expect.extend({
+  toHaveOnlyValidCharacters,
+});
+
+// Extend Vitest's `expect` interface with the custom matcher's type definition.
+declare module 'vitest' {
+  interface Assertion<T> {
+    toHaveOnlyValidCharacters(): T;
+  }
+  interface AsymmetricMatchersContaining {
+    toHaveOnlyValidCharacters(): void;
+  }
+}

packages/cli/src/test-utils/mockCommandContext.ts

@@ -53,8 +53,10 @@ export const createMockCommandContext = (
       setPendingItem: vi.fn(),
       loadHistory: vi.fn(),
       toggleCorgiMode: vi.fn(),
+      toggleVimEnabled: vi.fn(),
     },
     session: {
+      sessionShellAllowlist: new Set<string>(),
       stats: {
         sessionStartTime: new Date(),
         lastPromptTokenCount: 0,

packages/cli/src/ui/App.test.tsx

@@ -23,6 +23,10 @@ import { useGeminiStream } from './hooks/useGeminiStream.js';
 import { useConsoleMessages } from './hooks/useConsoleMessages.js';
 import { StreamingState, ConsoleMessageItem } from './types.js';
 import { Tips } from './components/Tips.js';
+import { checkForUpdates, UpdateObject } from './utils/updateCheck.js';
+import { EventEmitter } from 'events';
+import { updateEventEmitter } from '../utils/updateEventEmitter.js';
+import * as auth from '../config/auth.js';
 
 // Define a more complete mock server config based on actual Config
 interface MockServerConfig {
@@ -144,25 +148,30 @@ vi.mock('@qwen-code/qwen-code-core', async (importOriginal) => {
           getUserTier: vi.fn(),
         })),
         getCheckpointingEnabled: vi.fn(() => opts.checkpointing ?? true),
-        getAllGeminiMdFilenames: vi.fn(() => ['GEMINI.md']),
+        getAllGeminiMdFilenames: vi.fn(() => ['QWEN.md']),
         setFlashFallbackHandler: vi.fn(),
         getSessionId: vi.fn(() => 'test-session-id'),
         getUserTier: vi.fn().mockResolvedValue(undefined),
+        getIdeModeFeature: vi.fn(() => false),
         getIdeMode: vi.fn(() => false),
+        getWorkspaceContext: vi.fn(() => ({
+          getDirectories: vi.fn(() => []),
+        })),
       };
     });
 
   const ideContextMock = {
-    getOpenFilesContext: vi.fn(),
-    subscribeToOpenFiles: vi.fn(() => vi.fn()), // subscribe returns an unsubscribe function
+    getIdeContext: vi.fn(),
+    subscribeToIdeContext: vi.fn(() => vi.fn()), // subscribe returns an unsubscribe function
   };
 
   return {
     ...actualCore,
     Config: ConfigClassMock,
     MCPServerConfig: actualCore.MCPServerConfig,
-    getAllGeminiMdFilenames: vi.fn(() => ['GEMINI.md']),
+    getAllGeminiMdFilenames: vi.fn(() => ['QWEN.md']),
     ideContext: ideContextMock,
+    isGitRepository: vi.fn(),
   };
 });
 
@@ -220,6 +229,21 @@ vi.mock('./components/Header.js', () => ({
   Header: vi.fn(() => null),
 }));
 
+vi.mock('./utils/updateCheck.js', () => ({
+  checkForUpdates: vi.fn(),
+}));
+
+vi.mock('./config/auth.js', () => ({
+  validateAuthMethod: vi.fn(),
+}));
+
+const mockedCheckForUpdates = vi.mocked(checkForUpdates);
+const { isGitRepository: mockedIsGitRepository } = vi.mocked(
+  await import('@qwen-code/qwen-code-core'),
+);
+
+vi.mock('node:child_process');
+
 describe('App UI', () => {
   let mockConfig: MockServerConfig;
   let mockSettings: LoadedSettings;
@@ -277,7 +301,14 @@ describe('App UI', () => {
 
     // Ensure a theme is set so the theme dialog does not appear.
     mockSettings = createMockSettings({ workspace: { theme: 'Default' } });
-    vi.mocked(ideContext.getOpenFilesContext).mockReturnValue(undefined);
+
+    // Ensure getWorkspaceContext is available if not added by the constructor
+    if (!mockConfig.getWorkspaceContext) {
+      mockConfig.getWorkspaceContext = vi.fn(() => ({
+        getDirectories: vi.fn(() => ['/test/dir']),
+      }));
+    }
+    vi.mocked(ideContext.getIdeContext).mockReturnValue(undefined);
   });
 
   afterEach(() => {
@@ -288,11 +319,181 @@ describe('App UI', () => {
     vi.clearAllMocks(); // Clear mocks after each test
   });
 
+  describe('handleAutoUpdate', () => {
+    let spawnEmitter: EventEmitter;
+
+    beforeEach(async () => {
+      const { spawn } = await import('node:child_process');
+      spawnEmitter = new EventEmitter();
+      spawnEmitter.stdout = new EventEmitter();
+      spawnEmitter.stderr = new EventEmitter();
+      (spawn as vi.Mock).mockReturnValue(spawnEmitter);
+    });
+
+    afterEach(() => {
+      delete process.env.GEMINI_CLI_DISABLE_AUTOUPDATER;
+    });
+
+    it('should not start the update process when running from git', async () => {
+      mockedIsGitRepository.mockResolvedValue(true);
+      const info: UpdateObject = {
+        update: {
+          name: '@qwen-code/qwen-code',
+          latest: '1.1.0',
+          current: '1.0.0',
+        },
+        message: 'Qwen Code update available!',
+      };
+      mockedCheckForUpdates.mockResolvedValue(info);
+      const { spawn } = await import('node:child_process');
+
+      const { unmount } = render(
+        <App
+          config={mockConfig as unknown as ServerConfig}
+          settings={mockSettings}
+          version={mockVersion}
+        />,
+      );
+      currentUnmount = unmount;
+
+      await new Promise((resolve) => setTimeout(resolve, 10));
+
+      expect(spawn).not.toHaveBeenCalled();
+    });
+
+    it('should show a success message when update succeeds', async () => {
+      mockedIsGitRepository.mockResolvedValue(false);
+      const info: UpdateObject = {
+        update: {
+          name: '@qwen-code/qwen-code',
+          latest: '1.1.0',
+          current: '1.0.0',
+        },
+        message: 'Update available',
+      };
+      mockedCheckForUpdates.mockResolvedValue(info);
+
+      const { lastFrame, unmount } = render(
+        <App
+          config={mockConfig as unknown as ServerConfig}
+          settings={mockSettings}
+          version={mockVersion}
+        />,
+      );
+      currentUnmount = unmount;
+
+      updateEventEmitter.emit('update-success', info);
+
+      await new Promise((resolve) => setTimeout(resolve, 10));
+
+      expect(lastFrame()).toContain(
+        'Update successful! The new version will be used on your next run.',
+      );
+    });
+
+    it('should show an error message when update fails', async () => {
+      mockedIsGitRepository.mockResolvedValue(false);
+      const info: UpdateObject = {
+        update: {
+          name: '@qwen-code/qwen-code',
+          latest: '1.1.0',
+          current: '1.0.0',
+        },
+        message: 'Update available',
+      };
+      mockedCheckForUpdates.mockResolvedValue(info);
+
+      const { lastFrame, unmount } = render(
+        <App
+          config={mockConfig as unknown as ServerConfig}
+          settings={mockSettings}
+          version={mockVersion}
+        />,
+      );
+      currentUnmount = unmount;
+
+      updateEventEmitter.emit('update-failed', info);
+
+      await new Promise((resolve) => setTimeout(resolve, 10));
+
+      expect(lastFrame()).toContain(
+        'Automatic update failed. Please try updating manually',
+      );
+    });
+
+    it('should show an error message when spawn fails', async () => {
+      mockedIsGitRepository.mockResolvedValue(false);
+      const info: UpdateObject = {
+        update: {
+          name: '@qwen-code/qwen-code',
+          latest: '1.1.0',
+          current: '1.0.0',
+        },
+        message: 'Update available',
+      };
+      mockedCheckForUpdates.mockResolvedValue(info);
+
+      const { lastFrame, unmount } = render(
+        <App
+          config={mockConfig as unknown as ServerConfig}
+          settings={mockSettings}
+          version={mockVersion}
+        />,
+      );
+      currentUnmount = unmount;
+
+      // We are testing the App's reaction to an `update-failed` event,
+      // which is what should be emitted when a spawn error occurs elsewhere.
+      updateEventEmitter.emit('update-failed', info);
+
+      await new Promise((resolve) => setTimeout(resolve, 10));
+
+      expect(lastFrame()).toContain(
+        'Automatic update failed. Please try updating manually',
+      );
+    });
+
+    it('should not auto-update if GEMINI_CLI_DISABLE_AUTOUPDATER is true', async () => {
+      mockedIsGitRepository.mockResolvedValue(false);
+      process.env.GEMINI_CLI_DISABLE_AUTOUPDATER = 'true';
+      const info: UpdateObject = {
+        update: {
+          name: '@qwen-code/qwen-code',
+          latest: '1.1.0',
+          current: '1.0.0',
+        },
+        message: 'Update available',
+      };
+      mockedCheckForUpdates.mockResolvedValue(info);
+      const { spawn } = await import('node:child_process');
+
+      const { unmount } = render(
+        <App
+          config={mockConfig as unknown as ServerConfig}
+          settings={mockSettings}
+          version={mockVersion}
+        />,
+      );
+      currentUnmount = unmount;
+
+      await new Promise((resolve) => setTimeout(resolve, 10));
+
+      expect(spawn).not.toHaveBeenCalled();
+    });
+  });
+
   it('should display active file when available', async () => {
-    vi.mocked(ideContext.getOpenFilesContext).mockReturnValue({
-      activeFile: '/path/to/my-file.ts',
-      recentOpenFiles: [{ filePath: '/path/to/my-file.ts', content: 'hello' }],
-      selectedText: 'hello',
+    vi.mocked(ideContext.getIdeContext).mockReturnValue({
+      workspaceState: {
+        openFiles: [
+          {
+            path: '/path/to/my-file.ts',
+            isActive: true,
+            selectedText: 'hello',
+            timestamp: 0,
+          },
+        ],
+      },
     });
 
     const { lastFrame, unmount } = render(
@@ -304,12 +505,14 @@ describe('App UI', () => {
     );
     currentUnmount = unmount;
     await Promise.resolve();
-    expect(lastFrame()).toContain('1 recent file (ctrl+e to view)');
+    expect(lastFrame()).toContain('1 open file (ctrl+e to view)');
   });
 
-  it('should not display active file when not available', async () => {
-    vi.mocked(ideContext.getOpenFilesContext).mockReturnValue({
-      activeFile: '',
+  it('should not display any files when not available', async () => {
+    vi.mocked(ideContext.getIdeContext).mockReturnValue({
+      workspaceState: {
+        openFiles: [],
+      },
     });
 
     const { lastFrame, unmount } = render(
@@ -324,14 +527,57 @@ describe('App UI', () => {
     expect(lastFrame()).not.toContain('Open File');
   });
 
+  it('should display active file and other open files', async () => {
+    vi.mocked(ideContext.getIdeContext).mockReturnValue({
+      workspaceState: {
+        openFiles: [
+          {
+            path: '/path/to/my-file.ts',
+            isActive: true,
+            selectedText: 'hello',
+            timestamp: 0,
+          },
+          {
+            path: '/path/to/another-file.ts',
+            isActive: false,
+            timestamp: 1,
+          },
+          {
+            path: '/path/to/third-file.ts',
+            isActive: false,
+            timestamp: 2,
+          },
+        ],
+      },
+    });
+
+    const { lastFrame, unmount } = render(
+      <App
+        config={mockConfig as unknown as ServerConfig}
+        settings={mockSettings}
+        version={mockVersion}
+      />,
+    );
+    currentUnmount = unmount;
+    await Promise.resolve();
+    expect(lastFrame()).toContain('3 open files (ctrl+e to view)');
+  });
+
   it('should display active file and other context', async () => {
-    vi.mocked(ideContext.getOpenFilesContext).mockReturnValue({
-      activeFile: '/path/to/my-file.ts',
-      recentOpenFiles: [{ filePath: '/path/to/my-file.ts', content: 'hello' }],
-      selectedText: 'hello',
+    vi.mocked(ideContext.getIdeContext).mockReturnValue({
+      workspaceState: {
+        openFiles: [
+          {
+            path: '/path/to/my-file.ts',
+            isActive: true,
+            selectedText: 'hello',
+            timestamp: 0,
+          },
+        ],
+      },
     });
     mockConfig.getGeminiMdFileCount.mockReturnValue(1);
-    mockConfig.getAllGeminiMdFilenames.mockReturnValue(['GEMINI.md']);
+    mockConfig.getAllGeminiMdFilenames.mockReturnValue(['QWEN.md']);
 
     const { lastFrame, unmount } = render(
       <App
@@ -343,13 +589,13 @@ describe('App UI', () => {
     currentUnmount = unmount;
     await Promise.resolve();
     expect(lastFrame()).toContain(
-      'Using: 1 recent file (ctrl+e to view) | 1 GEMINI.md file',
+      'Using: 1 open file (ctrl+e to view) | 1 QWEN.md file',
     );
   });
 
-  it('should display default "GEMINI.md" in footer when contextFileName is not set and count is 1', async () => {
+  it('should display default "QWEN.md" in footer when contextFileName is not set and count is 1', async () => {
     mockConfig.getGeminiMdFileCount.mockReturnValue(1);
-    mockConfig.getAllGeminiMdFilenames.mockReturnValue(['GEMINI.md']);
+    mockConfig.getAllGeminiMdFilenames.mockReturnValue(['QWEN.md']);
     // For this test, ensure showMemoryUsage is false or debugMode is false if it relies on that
     mockConfig.getDebugMode.mockReturnValue(false);
     mockConfig.getShowMemoryUsage.mockReturnValue(false);
@@ -363,15 +609,12 @@ describe('App UI', () => {
     );
     currentUnmount = unmount;
     await Promise.resolve(); // Wait for any async updates
-    expect(lastFrame()).toContain('Using: 1 GEMINI.md file');
+    expect(lastFrame()).toContain('Using: 1 QWEN.md file');
   });
 
-  it('should display default "GEMINI.md" with plural when contextFileName is not set and count is > 1', async () => {
+  it('should display default "QWEN.md" with plural when contextFileName is not set and count is > 1', async () => {
     mockConfig.getGeminiMdFileCount.mockReturnValue(2);
-    mockConfig.getAllGeminiMdFilenames.mockReturnValue([
-      'GEMINI.md',
-      'GEMINI.md',
-    ]);
+    mockConfig.getAllGeminiMdFilenames.mockReturnValue(['QWEN.md', 'QWEN.md']);
     mockConfig.getDebugMode.mockReturnValue(false);
     mockConfig.getShowMemoryUsage.mockReturnValue(false);
 
@@ -384,7 +627,7 @@ describe('App UI', () => {
     );
     currentUnmount = unmount;
     await Promise.resolve();
-    expect(lastFrame()).toContain('Using: 2 GEMINI.md files');
+    expect(lastFrame()).toContain('Using: 2 QWEN.md files');
   });
 
   it('should display custom contextFileName in footer when set and count is 1', async () => {
@@ -481,12 +724,9 @@ describe('App UI', () => {
     expect(lastFrame()).not.toContain('ANY_FILE.MD');
   });
 
-  it('should display GEMINI.md and MCP server count when both are present', async () => {
+  it('should display QWEN.md and MCP server count when both are present', async () => {
     mockConfig.getGeminiMdFileCount.mockReturnValue(2);
-    mockConfig.getAllGeminiMdFilenames.mockReturnValue([
-      'GEMINI.md',
-      'GEMINI.md',
-    ]);
+    mockConfig.getAllGeminiMdFilenames.mockReturnValue(['QWEN.md', 'QWEN.md']);
     mockConfig.getMcpServers.mockReturnValue({
       server1: {} as MCPServerConfig,
     });
@@ -505,7 +745,7 @@ describe('App UI', () => {
     expect(lastFrame()).toContain('1 MCP server');
   });
 
-  it('should display only MCP server count when GEMINI.md count is 0', async () => {
+  it('should display only MCP server count when QWEN.md count is 0', async () => {
     mockConfig.getGeminiMdFileCount.mockReturnValue(0);
     mockConfig.getAllGeminiMdFilenames.mockReturnValue([]);
     mockConfig.getMcpServers.mockReturnValue({
@@ -764,4 +1004,50 @@ describe('App UI', () => {
       expect(lastFrame()).toContain('5 errors');
     });
   });
+
+  describe('auth validation', () => {
+    it('should call validateAuthMethod when useExternalAuth is false', async () => {
+      const validateAuthMethodSpy = vi.spyOn(auth, 'validateAuthMethod');
+      mockSettings = createMockSettings({
+        workspace: {
+          selectedAuthType: 'USE_GEMINI' as AuthType,
+          useExternalAuth: false,
+          theme: 'Default',
+        },
+      });
+
+      const { unmount } = render(
+        <App
+          config={mockConfig as unknown as ServerConfig}
+          settings={mockSettings}
+          version={mockVersion}
+        />,
+      );
+      currentUnmount = unmount;
+
+      expect(validateAuthMethodSpy).toHaveBeenCalledWith('USE_GEMINI');
+    });
+
+    it('should NOT call validateAuthMethod when useExternalAuth is true', async () => {
+      const validateAuthMethodSpy = vi.spyOn(auth, 'validateAuthMethod');
+      mockSettings = createMockSettings({
+        workspace: {
+          selectedAuthType: 'USE_GEMINI' as AuthType,
+          useExternalAuth: true,
+          theme: 'Default',
+        },
+      });
+
+      const { unmount } = render(
+        <App
+          config={mockConfig as unknown as ServerConfig}
+          settings={mockSettings}
+          version={mockVersion}
+        />,
+      );
+      currentUnmount = unmount;
+
+      expect(validateAuthMethodSpy).not.toHaveBeenCalled();
+    });
+  });
 });

packages/cli/src/ui/App.tsx

@@ -22,6 +22,7 @@ import { useGeminiStream } from './hooks/useGeminiStream.js';
 import { useLoadingIndicator } from './hooks/useLoadingIndicator.js';
 import { useThemeCommand } from './hooks/useThemeCommand.js';
 import { useAuthCommand } from './hooks/useAuthCommand.js';
+import { useQwenAuth } from './hooks/useQwenAuth.js';
 import { useEditorSettings } from './hooks/useEditorSettings.js';
 import { useSlashCommandProcessor } from './hooks/slashCommandProcessor.js';
 import { useAutoAcceptIndicator } from './hooks/useAutoAcceptIndicator.js';
@@ -35,10 +36,10 @@ import { Footer } from './components/Footer.js';
 import { ThemeDialog } from './components/ThemeDialog.js';
 import { AuthDialog } from './components/AuthDialog.js';
 import { AuthInProgress } from './components/AuthInProgress.js';
+import { QwenOAuthProgress } from './components/QwenOAuthProgress.js';
 import { EditorSettingsDialog } from './components/EditorSettingsDialog.js';
 import { ShellConfirmationDialog } from './components/ShellConfirmationDialog.js';
 import { Colors } from './colors.js';
-import { Help } from './components/Help.js';
 import { loadHierarchicalGeminiMemory } from '../config/config.js';
 import { LoadedSettings } from '../config/settings.js';
 import { Tips } from './components/Tips.js';
@@ -60,7 +61,7 @@ import {
   FlashFallbackEvent,
   logFlashFallback,
   AuthType,
-  type OpenFiles,
+  type IdeContext,
   ideContext,
 } from '@qwen-code/qwen-code-core';
 import { validateAuthMethod } from '../config/auth.js';
@@ -83,11 +84,12 @@ import {
   isGenericQuotaExceededError,
   UserTierId,
 } from '@qwen-code/qwen-code-core';
-import { checkForUpdates } from './utils/updateCheck.js';
+import { UpdateObject } from './utils/updateCheck.js';
 import ansiEscapes from 'ansi-escapes';
 import { OverflowProvider } from './contexts/OverflowContext.js';
 import { ShowMoreLines } from './components/ShowMoreLines.js';
 import { PrivacyNotice } from './privacy/PrivacyNotice.js';
+import { setUpdateHandler } from '../utils/handleAutoUpdate.js';
 import { appEvents, AppEvent } from '../utils/events.js';
 
 const CTRL_EXIT_PROMPT_DURATION_MS = 1000;
@@ -110,15 +112,16 @@ export const AppWrapper = (props: AppProps) => (
 const App = ({ config, settings, startupWarnings = [], version }: AppProps) => {
   const isFocused = useFocus();
   useBracketedPaste();
-  const [updateMessage, setUpdateMessage] = useState<string | null>(null);
+  const [updateInfo, setUpdateInfo] = useState<UpdateObject | null>(null);
   const { stdout } = useStdout();
   const nightly = version.includes('nightly');
+  const { history, addItem, clearItems, loadHistory } = useHistory();
 
   useEffect(() => {
-    checkForUpdates().then(setUpdateMessage);
-  }, []);
+    const cleanup = setUpdateHandler(addItem, setUpdateInfo);
+    return cleanup;
+  }, [addItem]);
 
-  const { history, addItem, clearItems, loadHistory } = useHistory();
   const {
     consoleMessages,
     handleNewMessage,
@@ -144,7 +147,6 @@ const App = ({ config, settings, startupWarnings = [], version }: AppProps) => {
 
   const [geminiMdFileCount, setGeminiMdFileCount] = useState<number>(0);
   const [debugMessage, setDebugMessage] = useState<string>('');
-  const [showHelp, setShowHelp] = useState<boolean>(false);
   const [themeError, setThemeError] = useState<string | null>(null);
   const [authError, setAuthError] = useState<string | null>(null);
   const [editorError, setEditorError] = useState<string | null>(null);
@@ -169,13 +171,15 @@ const App = ({ config, settings, startupWarnings = [], version }: AppProps) => {
   const [modelSwitchedFromQuotaError, setModelSwitchedFromQuotaError] =
     useState<boolean>(false);
   const [userTier, setUserTier] = useState<UserTierId | undefined>(undefined);
-  const [openFiles, setOpenFiles] = useState<OpenFiles | undefined>();
+  const [ideContextState, setIdeContextState] = useState<
+    IdeContext | undefined
+  >();
   const [isProcessing, setIsProcessing] = useState<boolean>(false);
 
   useEffect(() => {
-    const unsubscribe = ideContext.subscribeToOpenFiles(setOpenFiles);
+    const unsubscribe = ideContext.subscribeToIdeContext(setIdeContextState);
     // Set the initial value
-    setOpenFiles(ideContext.getOpenFilesContext());
+    setIdeContextState(ideContext.getIdeContext());
     return unsubscribe;
   }, []);
 
@@ -229,15 +233,29 @@ const App = ({ config, settings, startupWarnings = [], version }: AppProps) => {
     cancelAuthentication,
   } = useAuthCommand(settings, setAuthError, config);
 
+  const {
+    isQwenAuthenticating,
+    deviceAuth,
+    isQwenAuth,
+    cancelQwenAuth,
+    authStatus,
+    authMessage,
+  } = useQwenAuth(settings, isAuthenticating);
+
   useEffect(() => {
-    if (settings.merged.selectedAuthType) {
+    if (settings.merged.selectedAuthType && !settings.merged.useExternalAuth) {
       const error = validateAuthMethod(settings.merged.selectedAuthType);
       if (error) {
         setAuthError(error);
         openAuthDialog();
       }
     }
-  }, [settings.merged.selectedAuthType, openAuthDialog, setAuthError]);
+  }, [
+    settings.merged.selectedAuthType,
+    settings.merged.useExternalAuth,
+    openAuthDialog,
+    setAuthError,
+  ]);
 
   // Sync user tier from config when authentication changes
   useEffect(() => {
@@ -247,6 +265,27 @@ const App = ({ config, settings, startupWarnings = [], version }: AppProps) => {
     }
   }, [config, isAuthenticating]);
 
+  // Handle Qwen OAuth timeout
+  useEffect(() => {
+    if (isQwenAuth && authStatus === 'timeout') {
+      setAuthError(
+        authMessage ||
+          'Qwen OAuth authentication timed out. Please try again or select a different authentication method.',
+      );
+      cancelQwenAuth();
+      cancelAuthentication();
+      openAuthDialog();
+    }
+  }, [
+    isQwenAuth,
+    authStatus,
+    authMessage,
+    cancelQwenAuth,
+    cancelAuthentication,
+    openAuthDialog,
+    setAuthError,
+  ]);
+
   const {
     isEditorDialogOpen,
     openEditorDialog,
@@ -269,10 +308,14 @@ const App = ({ config, settings, startupWarnings = [], version }: AppProps) => {
     try {
       const { memoryContent, fileCount } = await loadHierarchicalGeminiMemory(
         process.cwd(),
+        settings.merged.loadMemoryFromIncludeDirectories
+          ? config.getWorkspaceContext().getDirectories()
+          : [],
         config.getDebugMode(),
         config.getFileService(),
         settings.merged,
         config.getExtensionContextFilePaths(),
+        settings.merged.memoryImportFormat || 'tree', // Use setting or default to 'tree'
         config.getFileFilteringOptions(),
       );
 
@@ -396,6 +439,7 @@ const App = ({ config, settings, startupWarnings = [], version }: AppProps) => {
 
       // Switch model for future use but return false to stop current retry
       config.setModel(fallbackModel);
+      config.setFallbackMode(true);
       logFlashFallback(
         config,
         new FlashFallbackEvent(config.getContentGeneratorConfig().authType!),
@@ -462,7 +506,6 @@ const App = ({ config, settings, startupWarnings = [], version }: AppProps) => {
     clearItems,
     loadHistory,
     refreshStatic,
-    setShowHelp,
     setDebugMessage,
     openThemeDialog,
     openAuthDialog,
@@ -472,6 +515,7 @@ const App = ({ config, settings, startupWarnings = [], version }: AppProps) => {
     openPrivacyNotice,
     toggleVimEnabled,
     setIsProcessing,
+    setGeminiMdFileCount,
   );
 
   const {
@@ -484,7 +528,6 @@ const App = ({ config, settings, startupWarnings = [], version }: AppProps) => {
     config.getGeminiClient(),
     history,
     addItem,
-    setShowHelp,
     config,
     setDebugMessage,
     handleSlashCommand,
@@ -494,6 +537,7 @@ const App = ({ config, settings, startupWarnings = [], version }: AppProps) => {
     performMemoryRefresh,
     modelSwitchedFromQuotaError,
     setModelSwitchedFromQuotaError,
+    refreshStatic,
   );
 
   // Input handling
@@ -568,7 +612,12 @@ const App = ({ config, settings, startupWarnings = [], version }: AppProps) => {
       if (Object.keys(mcpServers || {}).length > 0) {
         handleSlashCommand(newValue ? '/mcp desc' : '/mcp nodesc');
       }
-    } else if (key.ctrl && input === 'e' && ideContext) {
+    } else if (
+      key.ctrl &&
+      input === 'e' &&
+      config.getIdeMode() &&
+      ideContextState
+    ) {
       setShowIDEContextDetail((prev) => !prev);
     } else if (key.ctrl && (input === 'c' || input === 'C')) {
       handleExit(ctrlCPressedOnce, setCtrlCPressedOnce, ctrlCTimerRef);
@@ -587,7 +636,7 @@ const App = ({ config, settings, startupWarnings = [], version }: AppProps) => {
     if (config) {
       setGeminiMdFileCount(config.getGeminiMdFileCount());
     }
-  }, [config]);
+  }, [config, config.getGeminiMdFileCount]);
 
   const logger = useLogger();
   const [userMessages, setUserMessages] = useState<string[]>([]);
@@ -754,9 +803,6 @@ const App = ({ config, settings, startupWarnings = [], version }: AppProps) => {
   return (
     <StreamingContext.Provider value={streamingState}>
       <Box flexDirection="column" width="90%">
-        {/* Move UpdateNotification outside Static so it can re-render when updateMessage changes */}
-        {updateMessage && <UpdateNotification message={updateMessage} />}
-
         {/*
          * The Static component is an Ink intrinsic in which there can only be 1 per application.
          * Because of this restriction we're hacking it slightly by having a 'header' item here to
@@ -789,6 +835,7 @@ const App = ({ config, settings, startupWarnings = [], version }: AppProps) => {
                 item={h}
                 isPending={false}
                 config={config}
+                commands={slashCommands}
               />
             )),
           ]}
@@ -816,9 +863,9 @@ const App = ({ config, settings, startupWarnings = [], version }: AppProps) => {
           </Box>
         </OverflowProvider>
 
-        {showHelp && <Help commands={slashCommands} />}
-
         <Box flexDirection="column" ref={mainControlsRef}>
+          {/* Move UpdateNotification to render update notification above input area */}
+          {updateInfo && <UpdateNotification message={updateInfo.message} />}
           {startupWarnings.length > 0 && (
             <Box
               borderStyle="round"
@@ -858,13 +905,35 @@ const App = ({ config, settings, startupWarnings = [], version }: AppProps) => {
             </Box>
           ) : isAuthenticating ? (
             <>
-              <AuthInProgress
-                onTimeout={() => {
-                  setAuthError('Authentication timed out. Please try again.');
-                  cancelAuthentication();
-                  openAuthDialog();
-                }}
-              />
+              {isQwenAuth && isQwenAuthenticating ? (
+                <QwenOAuthProgress
+                  deviceAuth={deviceAuth || undefined}
+                  authStatus={authStatus}
+                  authMessage={authMessage}
+                  onTimeout={() => {
+                    setAuthError(
+                      'Qwen OAuth authentication timed out. Please try again.',
+                    );
+                    cancelQwenAuth();
+                    cancelAuthentication();
+                    openAuthDialog();
+                  }}
+                  onCancel={() => {
+                    setAuthError('Qwen OAuth authentication cancelled.');
+                    cancelQwenAuth();
+                    cancelAuthentication();
+                    openAuthDialog();
+                  }}
+                />
+              ) : (
+                <AuthInProgress
+                  onTimeout={() => {
+                    setAuthError('Authentication timed out. Please try again.');
+                    cancelAuthentication();
+                    openAuthDialog();
+                  }}
+                />
+              )}
               {showErrorDetails && (
                 <OverflowProvider>
                   <Box flexDirection="column">
@@ -943,7 +1012,7 @@ const App = ({ config, settings, startupWarnings = [], version }: AppProps) => {
                     </Text>
                   ) : (
                     <ContextSummaryDisplay
-                      openFiles={openFiles}
+                      ideContext={ideContextState}
                       geminiMdFileCount={geminiMdFileCount}
                       contextFileNames={contextFileNames}
                       mcpServers={config.getMcpServers()}
@@ -963,7 +1032,12 @@ const App = ({ config, settings, startupWarnings = [], version }: AppProps) => {
                 </Box>
               </Box>
               {showIDEContextDetail && (
-                <IDEContextDetailDisplay openFiles={openFiles} />
+                <IDEContextDetailDisplay
+                  ideContext={ideContextState}
+                  detectedIdeDisplay={config
+                    .getIdeClient()
+                    .getDetectedIdeDisplayName()}
+                />
               )}
               {showErrorDetails && (
                 <OverflowProvider>

packages/cli/src/ui/commands/aboutCommand.test.ts

@@ -62,6 +62,7 @@ describe('aboutCommand', () => {
   });
 
   it('should call addItem with all version info', async () => {
+    process.env.SANDBOX = '';
     if (!aboutCommand.action) {
       throw new Error('The about command must have an action.');
     }

packages/cli/src/ui/commands/chatCommand.test.ts

@@ -40,14 +40,17 @@ describe('chatCommand', () => {
   let mockGetChat: ReturnType<typeof vi.fn>;
   let mockSaveCheckpoint: ReturnType<typeof vi.fn>;
   let mockLoadCheckpoint: ReturnType<typeof vi.fn>;
+  let mockDeleteCheckpoint: ReturnType<typeof vi.fn>;
   let mockGetHistory: ReturnType<typeof vi.fn>;
 
-  const getSubCommand = (name: 'list' | 'save' | 'resume'): SlashCommand => {
+  const getSubCommand = (
+    name: 'list' | 'save' | 'resume' | 'delete',
+  ): SlashCommand => {
     const subCommand = chatCommand.subCommands?.find(
       (cmd) => cmd.name === name,
     );
     if (!subCommand) {
-      throw new Error(`/memory ${name} command not found.`);
+      throw new Error(`/chat ${name} command not found.`);
     }
     return subCommand;
   };
@@ -59,6 +62,7 @@ describe('chatCommand', () => {
     });
     mockSaveCheckpoint = vi.fn().mockResolvedValue(undefined);
     mockLoadCheckpoint = vi.fn().mockResolvedValue([]);
+    mockDeleteCheckpoint = vi.fn().mockResolvedValue(true);
 
     mockContext = createMockCommandContext({
       services: {
@@ -72,6 +76,7 @@ describe('chatCommand', () => {
         logger: {
           saveCheckpoint: mockSaveCheckpoint,
           loadCheckpoint: mockLoadCheckpoint,
+          deleteCheckpoint: mockDeleteCheckpoint,
           initialize: vi.fn().mockResolvedValue(undefined),
         },
       },
@@ -85,7 +90,7 @@ describe('chatCommand', () => {
   it('should have the correct main command definition', () => {
     expect(chatCommand.name).toBe('chat');
     expect(chatCommand.description).toBe('Manage conversation history.');
-    expect(chatCommand.subCommands).toHaveLength(3);
+    expect(chatCommand.subCommands).toHaveLength(4);
   });
 
   describe('list subcommand', () => {
@@ -297,4 +302,63 @@ describe('chatCommand', () => {
       });
     });
   });
+
+  describe('delete subcommand', () => {
+    let deleteCommand: SlashCommand;
+    const tag = 'my-tag';
+    beforeEach(() => {
+      deleteCommand = getSubCommand('delete');
+    });
+
+    it('should return an error if tag is missing', async () => {
+      const result = await deleteCommand?.action?.(mockContext, '  ');
+      expect(result).toEqual({
+        type: 'message',
+        messageType: 'error',
+        content: 'Missing tag. Usage: /chat delete <tag>',
+      });
+    });
+
+    it('should return an error if checkpoint is not found', async () => {
+      mockDeleteCheckpoint.mockResolvedValue(false);
+      const result = await deleteCommand?.action?.(mockContext, tag);
+      expect(result).toEqual({
+        type: 'message',
+        messageType: 'error',
+        content: `Error: No checkpoint found with tag '${tag}'.`,
+      });
+    });
+
+    it('should delete the conversation', async () => {
+      const result = await deleteCommand?.action?.(mockContext, tag);
+
+      expect(mockDeleteCheckpoint).toHaveBeenCalledWith(tag);
+      expect(result).toEqual({
+        type: 'message',
+        messageType: 'info',
+        content: `Conversation checkpoint '${tag}' has been deleted.`,
+      });
+    });
+
+    describe('completion', () => {
+      it('should provide completion suggestions', async () => {
+        const fakeFiles = ['checkpoint-alpha.json', 'checkpoint-beta.json'];
+        mockFs.readdir.mockImplementation(
+          (async (_: string): Promise<string[]> =>
+            fakeFiles as string[]) as unknown as typeof fsPromises.readdir,
+        );
+
+        mockFs.stat.mockImplementation(
+          (async (_: string): Promise<Stats> =>
+            ({
+              mtime: new Date(),
+            }) as Stats) as unknown as typeof fsPromises.stat,
+        );
+
+        const result = await deleteCommand?.completion?.(mockContext, 'a');
+
+        expect(result).toEqual(['alpha']);
+      });
+    });
+  });
 });

packages/cli/src/ui/commands/chatCommand.ts

@@ -206,9 +206,49 @@ const resumeCommand: SlashCommand = {
   },
 };
 
+const deleteCommand: SlashCommand = {
+  name: 'delete',
+  description: 'Delete a conversation checkpoint. Usage: /chat delete <tag>',
+  kind: CommandKind.BUILT_IN,
+  action: async (context, args): Promise<MessageActionReturn> => {
+    const tag = args.trim();
+    if (!tag) {
+      return {
+        type: 'message',
+        messageType: 'error',
+        content: 'Missing tag. Usage: /chat delete <tag>',
+      };
+    }
+
+    const { logger } = context.services;
+    await logger.initialize();
+    const deleted = await logger.deleteCheckpoint(tag);
+
+    if (deleted) {
+      return {
+        type: 'message',
+        messageType: 'info',
+        content: `Conversation checkpoint '${tag}' has been deleted.`,
+      };
+    } else {
+      return {
+        type: 'message',
+        messageType: 'error',
+        content: `Error: No checkpoint found with tag '${tag}'.`,
+      };
+    }
+  },
+  completion: async (context, partialArg) => {
+    const chatDetails = await getSavedChatTags(context, true);
+    return chatDetails
+      .map((chat) => chat.name)
+      .filter((name) => name.startsWith(partialArg));
+  },
+};
+
 export const chatCommand: SlashCommand = {
   name: 'chat',
   description: 'Manage conversation history.',
   kind: CommandKind.BUILT_IN,
-  subCommands: [listCommand, saveCommand, resumeCommand],
+  subCommands: [listCommand, saveCommand, resumeCommand, deleteCommand],
 };

packages/cli/src/ui/commands/directoryCommand.test.tsx

@@ -0,0 +1,185 @@
+/**
+ * @license
+ * Copyright 2025 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+import { describe, it, expect, vi, beforeEach } from 'vitest';
+import { directoryCommand, expandHomeDir } from './directoryCommand.js';
+import { Config, WorkspaceContext } from '@qwen-code/qwen-code-core';
+import { CommandContext } from './types.js';
+import { MessageType } from '../types.js';
+import * as os from 'os';
+import * as path from 'path';
+
+describe('directoryCommand', () => {
+  let mockContext: CommandContext;
+  let mockConfig: Config;
+  let mockWorkspaceContext: WorkspaceContext;
+  const addCommand = directoryCommand.subCommands?.find(
+    (c) => c.name === 'add',
+  );
+  const showCommand = directoryCommand.subCommands?.find(
+    (c) => c.name === 'show',
+  );
+
+  beforeEach(() => {
+    mockWorkspaceContext = {
+      addDirectory: vi.fn(),
+      getDirectories: vi
+        .fn()
+        .mockReturnValue([
+          path.normalize('/home/user/project1'),
+          path.normalize('/home/user/project2'),
+        ]),
+    } as unknown as WorkspaceContext;
+
+    mockConfig = {
+      getWorkspaceContext: () => mockWorkspaceContext,
+      isRestrictiveSandbox: vi.fn().mockReturnValue(false),
+      getGeminiClient: vi.fn().mockReturnValue({
+        addDirectoryContext: vi.fn(),
+      }),
+      getWorkingDir: () => '/test/dir',
+      shouldLoadMemoryFromIncludeDirectories: () => false,
+      getDebugMode: () => false,
+      getFileService: () => ({}),
+      getExtensionContextFilePaths: () => [],
+      getFileFilteringOptions: () => ({ ignore: [], include: [] }),
+      setUserMemory: vi.fn(),
+      setGeminiMdFileCount: vi.fn(),
+    } as unknown as Config;
+
+    mockContext = {
+      services: {
+        config: mockConfig,
+        settings: {
+          merged: {
+            memoryDiscoveryMaxDirs: 1000,
+          },
+        },
+      },
+      ui: {
+        addItem: vi.fn(),
+      },
+    } as unknown as CommandContext;
+  });
+
+  describe('show', () => {
+    it('should display the list of directories', () => {
+      if (!showCommand?.action) throw new Error('No action');
+      showCommand.action(mockContext, '');
+      expect(mockWorkspaceContext.getDirectories).toHaveBeenCalled();
+      expect(mockContext.ui.addItem).toHaveBeenCalledWith(
+        expect.objectContaining({
+          type: MessageType.INFO,
+          text: `Current workspace directories:\n- ${path.normalize(
+            '/home/user/project1',
+          )}\n- ${path.normalize('/home/user/project2')}`,
+        }),
+        expect.any(Number),
+      );
+    });
+  });
+
+  describe('add', () => {
+    it('should show an error if no path is provided', () => {
+      if (!addCommand?.action) throw new Error('No action');
+      addCommand.action(mockContext, '');
+      expect(mockContext.ui.addItem).toHaveBeenCalledWith(
+        expect.objectContaining({
+          type: MessageType.ERROR,
+          text: 'Please provide at least one path to add.',
+        }),
+        expect.any(Number),
+      );
+    });
+
+    it('should call addDirectory and show a success message for a single path', async () => {
+      const newPath = path.normalize('/home/user/new-project');
+      if (!addCommand?.action) throw new Error('No action');
+      await addCommand.action(mockContext, newPath);
+      expect(mockWorkspaceContext.addDirectory).toHaveBeenCalledWith(newPath);
+      expect(mockContext.ui.addItem).toHaveBeenCalledWith(
+        expect.objectContaining({
+          type: MessageType.INFO,
+          text: `Successfully added directories:\n- ${newPath}`,
+        }),
+        expect.any(Number),
+      );
+    });
+
+    it('should call addDirectory for each path and show a success message for multiple paths', async () => {
+      const newPath1 = path.normalize('/home/user/new-project1');
+      const newPath2 = path.normalize('/home/user/new-project2');
+      if (!addCommand?.action) throw new Error('No action');
+      await addCommand.action(mockContext, `${newPath1},${newPath2}`);
+      expect(mockWorkspaceContext.addDirectory).toHaveBeenCalledWith(newPath1);
+      expect(mockWorkspaceContext.addDirectory).toHaveBeenCalledWith(newPath2);
+      expect(mockContext.ui.addItem).toHaveBeenCalledWith(
+        expect.objectContaining({
+          type: MessageType.INFO,
+          text: `Successfully added directories:\n- ${newPath1}\n- ${newPath2}`,
+        }),
+        expect.any(Number),
+      );
+    });
+
+    it('should show an error if addDirectory throws an exception', async () => {
+      const error = new Error('Directory does not exist');
+      vi.mocked(mockWorkspaceContext.addDirectory).mockImplementation(() => {
+        throw error;
+      });
+      const newPath = path.normalize('/home/user/invalid-project');
+      if (!addCommand?.action) throw new Error('No action');
+      await addCommand.action(mockContext, newPath);
+      expect(mockContext.ui.addItem).toHaveBeenCalledWith(
+        expect.objectContaining({
+          type: MessageType.ERROR,
+          text: `Error adding '${newPath}': ${error.message}`,
+        }),
+        expect.any(Number),
+      );
+    });
+
+    it('should handle a mix of successful and failed additions', async () => {
+      const validPath = path.normalize('/home/user/valid-project');
+      const invalidPath = path.normalize('/home/user/invalid-project');
+      const error = new Error('Directory does not exist');
+      vi.mocked(mockWorkspaceContext.addDirectory).mockImplementation(
+        (p: string) => {
+          if (p === invalidPath) {
+            throw error;
+          }
+        },
+      );
+
+      if (!addCommand?.action) throw new Error('No action');
+      await addCommand.action(mockContext, `${validPath},${invalidPath}`);
+
+      expect(mockContext.ui.addItem).toHaveBeenCalledWith(
+        expect.objectContaining({
+          type: MessageType.INFO,
+          text: `Successfully added directories:\n- ${validPath}`,
+        }),
+        expect.any(Number),
+      );
+
+      expect(mockContext.ui.addItem).toHaveBeenCalledWith(
+        expect.objectContaining({
+          type: MessageType.ERROR,
+          text: `Error adding '${invalidPath}': ${error.message}`,
+        }),
+        expect.any(Number),
+      );
+    });
+  });
+  it('should correctly expand a Windows-style home directory path', () => {
+    const windowsPath = '%userprofile%\\Documents';
+    const expectedPath = path.win32.join(os.homedir(), 'Documents');
+    const result = expandHomeDir(windowsPath);
+    expect(path.win32.normalize(result)).toBe(
+      path.win32.normalize(expectedPath),
+    );
+  });
+});

packages/cli/src/ui/commands/directoryCommand.tsx

@@ -0,0 +1,182 @@
+/**
+ * @license
+ * Copyright 2025 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+import { SlashCommand, CommandContext, CommandKind } from './types.js';
+import { MessageType } from '../types.js';
+import * as os from 'os';
+import * as path from 'path';
+import { loadServerHierarchicalMemory } from '@qwen-code/qwen-code-core';
+
+export function expandHomeDir(p: string): string {
+  if (!p) {
+    return '';
+  }
+  let expandedPath = p;
+  if (p.toLowerCase().startsWith('%userprofile%')) {
+    expandedPath = os.homedir() + p.substring('%userprofile%'.length);
+  } else if (p === '~' || p.startsWith('~/')) {
+    expandedPath = os.homedir() + p.substring(1);
+  }
+  return path.normalize(expandedPath);
+}
+
+export const directoryCommand: SlashCommand = {
+  name: 'directory',
+  altNames: ['dir'],
+  description: 'Manage workspace directories',
+  kind: CommandKind.BUILT_IN,
+  subCommands: [
+    {
+      name: 'add',
+      description:
+        'Add directories to the workspace. Use comma to separate multiple paths',
+      kind: CommandKind.BUILT_IN,
+      action: async (context: CommandContext, args: string) => {
+        const {
+          ui: { addItem },
+          services: { config },
+        } = context;
+        const [...rest] = args.split(' ');
+
+        if (!config) {
+          addItem(
+            {
+              type: MessageType.ERROR,
+              text: 'Configuration is not available.',
+            },
+            Date.now(),
+          );
+          return;
+        }
+
+        const workspaceContext = config.getWorkspaceContext();
+
+        const pathsToAdd = rest
+          .join(' ')
+          .split(',')
+          .filter((p) => p);
+        if (pathsToAdd.length === 0) {
+          addItem(
+            {
+              type: MessageType.ERROR,
+              text: 'Please provide at least one path to add.',
+            },
+            Date.now(),
+          );
+          return;
+        }
+
+        if (config.isRestrictiveSandbox()) {
+          return {
+            type: 'message' as const,
+            messageType: 'error' as const,
+            content:
+              'The /directory add command is not supported in restrictive sandbox profiles. Please use --include-directories when starting the session instead.',
+          };
+        }
+
+        const added: string[] = [];
+        const errors: string[] = [];
+
+        for (const pathToAdd of pathsToAdd) {
+          try {
+            workspaceContext.addDirectory(expandHomeDir(pathToAdd.trim()));
+            added.push(pathToAdd.trim());
+          } catch (e) {
+            const error = e as Error;
+            errors.push(`Error adding '${pathToAdd.trim()}': ${error.message}`);
+          }
+        }
+
+        try {
+          if (config.shouldLoadMemoryFromIncludeDirectories()) {
+            const { memoryContent, fileCount } =
+              await loadServerHierarchicalMemory(
+                config.getWorkingDir(),
+                [
+                  ...config.getWorkspaceContext().getDirectories(),
+                  ...pathsToAdd,
+                ],
+                config.getDebugMode(),
+                config.getFileService(),
+                config.getExtensionContextFilePaths(),
+                context.services.settings.merged.memoryImportFormat || 'tree', // Use setting or default to 'tree'
+                config.getFileFilteringOptions(),
+                context.services.settings.merged.memoryDiscoveryMaxDirs,
+              );
+            config.setUserMemory(memoryContent);
+            config.setGeminiMdFileCount(fileCount);
+            context.ui.setGeminiMdFileCount(fileCount);
+          }
+          addItem(
+            {
+              type: MessageType.INFO,
+              text: `Successfully added GEMINI.md files from the following directories if there are:\n- ${added.join('\n- ')}`,
+            },
+            Date.now(),
+          );
+        } catch (error) {
+          errors.push(`Error refreshing memory: ${(error as Error).message}`);
+        }
+
+        if (added.length > 0) {
+          const gemini = config.getGeminiClient();
+          if (gemini) {
+            await gemini.addDirectoryContext();
+          }
+          addItem(
+            {
+              type: MessageType.INFO,
+              text: `Successfully added directories:\n- ${added.join('\n- ')}`,
+            },
+            Date.now(),
+          );
+        }
+
+        if (errors.length > 0) {
+          addItem(
+            {
+              type: MessageType.ERROR,
+              text: errors.join('\n'),
+            },
+            Date.now(),
+          );
+        }
+      },
+    },
+    {
+      name: 'show',
+      description: 'Show all directories in the workspace',
+      kind: CommandKind.BUILT_IN,
+      action: async (context: CommandContext) => {
+        const {
+          ui: { addItem },
+          services: { config },
+        } = context;
+        if (!config) {
+          addItem(
+            {
+              type: MessageType.ERROR,
+              text: 'Configuration is not available.',
+            },
+            Date.now(),
+          );
+          return;
+        }
+        const workspaceContext = config.getWorkspaceContext();
+        const directories = workspaceContext.getDirectories();
+        const directoryList = directories.map((dir) => `- ${dir}`).join('\n');
+        addItem(
+          {
+            type: MessageType.INFO,
+            text: `Current workspace directories:\n${directoryList}`,
+          },
+          Date.now(),
+        );
+      },
+    },
+  ],
+};

packages/cli/src/ui/commands/helpCommand.test.ts

@@ -4,37 +4,49 @@
  * SPDX-License-Identifier: Apache-2.0
  */
 
-import { vi, describe, it, expect, beforeEach } from 'vitest';
+import { describe, it, expect, vi, beforeEach, afterEach } from 'vitest';
 import { helpCommand } from './helpCommand.js';
 import { type CommandContext } from './types.js';
+import { createMockCommandContext } from '../../test-utils/mockCommandContext.js';
+import { MessageType } from '../types.js';
+import { CommandKind } from './types.js';
 
 describe('helpCommand', () => {
   let mockContext: CommandContext;
+  const originalEnv = { ...process.env };
 
   beforeEach(() => {
-    mockContext = {} as unknown as CommandContext;
+    mockContext = createMockCommandContext({
+      ui: {
+        addItem: vi.fn(),
+      },
+    } as unknown as CommandContext);
   });
 
-  it("should return a dialog action and log a debug message for '/help'", () => {
-    const consoleDebugSpy = vi
-      .spyOn(console, 'debug')
-      .mockImplementation(() => {});
+  afterEach(() => {
+    process.env = { ...originalEnv };
+    vi.clearAllMocks();
+  });
+
+  it('should add a help message to the UI history', async () => {
     if (!helpCommand.action) {
       throw new Error('Help command has no action');
     }
-    const result = helpCommand.action(mockContext, '');
 
-    expect(result).toEqual({
-      type: 'dialog',
-      dialog: 'help',
-    });
-    expect(consoleDebugSpy).toHaveBeenCalledWith('Opening help UI ...');
+    await helpCommand.action(mockContext, '');
+
+    expect(mockContext.ui.addItem).toHaveBeenCalledWith(
+      expect.objectContaining({
+        type: MessageType.HELP,
+        timestamp: expect.any(Date),
+      }),
+      expect.any(Number),
+    );
   });
 
-  it("should also be triggered by its alternative name '?'", () => {
-    // This test is more conceptual. The routing of altNames to the command
-    // is handled by the slash command processor, but we can assert the
-    // altNames is correctly defined on the command object itself.
-    expect(helpCommand.altNames).toContain('?');
+  it('should have the correct command properties', () => {
+    expect(helpCommand.name).toBe('help');
+    expect(helpCommand.kind).toBe(CommandKind.BUILT_IN);
+    expect(helpCommand.description).toBe('for help on Qwen Code');
   });
 });

packages/cli/src/ui/commands/helpCommand.ts

@@ -4,18 +4,20 @@
  * SPDX-License-Identifier: Apache-2.0
  */
 
-import { CommandKind, OpenDialogActionReturn, SlashCommand } from './types.js';
+import { CommandKind, SlashCommand } from './types.js';
+import { MessageType, type HistoryItemHelp } from '../types.js';
 
 export const helpCommand: SlashCommand = {
   name: 'help',
   altNames: ['?'],
-  description: 'for help on Qwen Code',
   kind: CommandKind.BUILT_IN,
-  action: (_context, _args): OpenDialogActionReturn => {
-    console.debug('Opening help UI ...');
-    return {
-      type: 'dialog',
-      dialog: 'help',
+  description: 'for help on Qwen Code',
+  action: async (context) => {
+    const helpItem: Omit<HistoryItemHelp, 'id'> = {
+      type: MessageType.HELP,
+      timestamp: new Date(),
     };
+
+    context.ui.addItem(helpItem, Date.now());
   },
 };

packages/cli/src/ui/commands/ideCommand.test.ts

@@ -15,24 +15,16 @@ import {
 } from 'vitest';
 import { ideCommand } from './ideCommand.js';
 import { type CommandContext } from './types.js';
-import { type Config } from '@qwen-code/qwen-code-core';
-import * as child_process from 'child_process';
-import { glob } from 'glob';
-
-import { IDEConnectionStatus } from '@qwen-code/qwen-code-core/index.js';
+import { type Config, DetectedIde } from '@qwen-code/qwen-code-core';
+import * as core from '@qwen-code/qwen-code-core';
 
 vi.mock('child_process');
 vi.mock('glob');
-
-function regexEscape(value: string) {
-  return value.replace(/[.*+?^${}()|[\]\\]/g, '\\$&');
-}
+vi.mock('@qwen-code/qwen-code-core');
 
 describe('ideCommand', () => {
   let mockContext: CommandContext;
   let mockConfig: Config;
-  let execSyncSpy: MockInstance;
-  let globSyncSpy: MockInstance;
   let platformSpy: MockInstance;
 
   beforeEach(() => {
@@ -40,15 +32,27 @@ describe('ideCommand', () => {
       ui: {
         addItem: vi.fn(),
       },
+      services: {
+        settings: {
+          setValue: vi.fn(),
+        },
+      },
     } as unknown as CommandContext;
 
     mockConfig = {
+      getIdeModeFeature: vi.fn(),
       getIdeMode: vi.fn(),
-      getIdeClient: vi.fn(),
+      getIdeClient: vi.fn(() => ({
+        reconnect: vi.fn(),
+        disconnect: vi.fn(),
+        getCurrentIde: vi.fn(),
+        getDetectedIdeDisplayName: vi.fn(),
+        getConnectionStatus: vi.fn(),
+      })),
+      setIdeModeAndSyncConnection: vi.fn(),
+      setIdeMode: vi.fn(),
     } as unknown as Config;
 
-    execSyncSpy = vi.spyOn(child_process, 'execSync');
-    globSyncSpy = vi.spyOn(glob, 'sync');
     platformSpy = vi.spyOn(process, 'platform', 'get');
   });
 
@@ -56,51 +60,61 @@ describe('ideCommand', () => {
     vi.restoreAllMocks();
   });
 
-  it('should return null if ideMode is not enabled', () => {
-    vi.mocked(mockConfig.getIdeMode).mockReturnValue(false);
+  it('should return null if ideModeFeature is not enabled', () => {
+    vi.mocked(mockConfig.getIdeModeFeature).mockReturnValue(false);
     const command = ideCommand(mockConfig);
     expect(command).toBeNull();
   });
 
-  it('should return the ide command if ideMode is enabled', () => {
+  it('should return the ide command if ideModeFeature is enabled', () => {
+    vi.mocked(mockConfig.getIdeModeFeature).mockReturnValue(true);
     vi.mocked(mockConfig.getIdeMode).mockReturnValue(true);
+    vi.mocked(mockConfig.getIdeClient).mockReturnValue({
+      getCurrentIde: () => DetectedIde.VSCode,
+      getDetectedIdeDisplayName: () => 'VS Code',
+    } as ReturnType<Config['getIdeClient']>);
     const command = ideCommand(mockConfig);
     expect(command).not.toBeNull();
     expect(command?.name).toBe('ide');
-    expect(command?.subCommands).toHaveLength(2);
-    expect(command?.subCommands?.[0].name).toBe('status');
-    expect(command?.subCommands?.[1].name).toBe('install');
+    expect(command?.subCommands).toHaveLength(3);
+    expect(command?.subCommands?.[0].name).toBe('disable');
+    expect(command?.subCommands?.[1].name).toBe('status');
+    expect(command?.subCommands?.[2].name).toBe('install');
   });
 
   describe('status subcommand', () => {
     const mockGetConnectionStatus = vi.fn();
     beforeEach(() => {
-      vi.mocked(mockConfig.getIdeMode).mockReturnValue(true);
+      vi.mocked(mockConfig.getIdeModeFeature).mockReturnValue(true);
       vi.mocked(mockConfig.getIdeClient).mockReturnValue({
         getConnectionStatus: mockGetConnectionStatus,
-      } as ReturnType<Config['getIdeClient']>);
+        getCurrentIde: () => DetectedIde.VSCode,
+        getDetectedIdeDisplayName: () => 'VS Code',
+      } as unknown as ReturnType<Config['getIdeClient']>);
     });
 
     it('should show connected status', () => {
       mockGetConnectionStatus.mockReturnValue({
-        status: IDEConnectionStatus.Connected,
+        status: core.IDEConnectionStatus.Connected,
       });
       const command = ideCommand(mockConfig);
-      const result = command!.subCommands![0].action!(mockContext, '');
+      const result = command!.subCommands!.find((c) => c.name === 'status')!
+        .action!(mockContext, '');
       expect(mockGetConnectionStatus).toHaveBeenCalled();
       expect(result).toEqual({
         type: 'message',
         messageType: 'info',
-        content: '🟢 Connected',
+        content: '🟢 Connected to VS Code',
       });
     });
 
     it('should show connecting status', () => {
       mockGetConnectionStatus.mockReturnValue({
-        status: IDEConnectionStatus.Connecting,
+        status: core.IDEConnectionStatus.Connecting,
       });
       const command = ideCommand(mockConfig);
-      const result = command!.subCommands![0].action!(mockContext, '');
+      const result = command!.subCommands!.find((c) => c.name === 'status')!
+        .action!(mockContext, '');
       expect(mockGetConnectionStatus).toHaveBeenCalled();
       expect(result).toEqual({
         type: 'message',
@@ -110,10 +124,11 @@ describe('ideCommand', () => {
     });
     it('should show disconnected status', () => {
       mockGetConnectionStatus.mockReturnValue({
-        status: IDEConnectionStatus.Disconnected,
+        status: core.IDEConnectionStatus.Disconnected,
       });
       const command = ideCommand(mockConfig);
-      const result = command!.subCommands![0].action!(mockContext, '');
+      const result = command!.subCommands!.find((c) => c.name === 'status')!
+        .action!(mockContext, '');
       expect(mockGetConnectionStatus).toHaveBeenCalled();
       expect(result).toEqual({
         type: 'message',
@@ -125,11 +140,12 @@ describe('ideCommand', () => {
     it('should show disconnected status with details', () => {
       const details = 'Something went wrong';
       mockGetConnectionStatus.mockReturnValue({
-        status: IDEConnectionStatus.Disconnected,
+        status: core.IDEConnectionStatus.Disconnected,
         details,
       });
       const command = ideCommand(mockConfig);
-      const result = command!.subCommands![0].action!(mockContext, '');
+      const result = command!.subCommands!.find((c) => c.name === 'status')!
+        .action!(mockContext, '');
       expect(mockGetConnectionStatus).toHaveBeenCalled();
       expect(result).toEqual({
         type: 'message',
@@ -140,128 +156,77 @@ describe('ideCommand', () => {
   });
 
   describe('install subcommand', () => {
+    const mockInstall = vi.fn();
     beforeEach(() => {
+      vi.mocked(mockConfig.getIdeModeFeature).mockReturnValue(true);
       vi.mocked(mockConfig.getIdeMode).mockReturnValue(true);
+      vi.mocked(mockConfig.getIdeClient).mockReturnValue({
+        getCurrentIde: () => DetectedIde.VSCode,
+        getConnectionStatus: vi.fn(),
+        getDetectedIdeDisplayName: () => 'VS Code',
+      } as unknown as ReturnType<Config['getIdeClient']>);
+      vi.mocked(core.getIdeInstaller).mockReturnValue({
+        install: mockInstall,
+        isInstalled: vi.fn(),
+      });
       platformSpy.mockReturnValue('linux');
     });
 
-    it('should show an error if VSCode is not installed', async () => {
-      execSyncSpy.mockImplementation(() => {
-        throw new Error('Command not found');
+    it('should install the extension', async () => {
+      mockInstall.mockResolvedValue({
+        success: true,
+        message: 'Successfully installed.',
       });
 
       const command = ideCommand(mockConfig);
-
-      await command!.subCommands![1].action!(mockContext, '');
-      expect(mockContext.ui.addItem).toHaveBeenCalledWith(
-        expect.objectContaining({
-          type: 'error',
-          text: expect.stringMatching(/VS Code command-line tool .* not found/),
-        }),
-        expect.any(Number),
+      await command!.subCommands!.find((c) => c.name === 'install')!.action!(
+        mockContext,
+        '',
       );
-    });
 
-    it('should show an error if the VSIX file is not found', async () => {
-      execSyncSpy.mockReturnValue(''); // VSCode is installed
-      globSyncSpy.mockReturnValue([]); // No .vsix file found
-
-      const command = ideCommand(mockConfig);
-      await command!.subCommands![1].action!(mockContext, '');
-
-      expect(mockContext.ui.addItem).toHaveBeenCalledWith(
-        expect.objectContaining({
-          type: 'error',
-          text: 'Could not find the required VS Code companion extension. Please file a bug via /bug.',
-        }),
-        expect.any(Number),
-      );
-    });
-
-    it('should install the extension if found in the bundle directory', async () => {
-      const vsixPath = '/path/to/bundle/gemini.vsix';
-      execSyncSpy.mockReturnValue(''); // VSCode is installed
-      globSyncSpy.mockReturnValue([vsixPath]); // Found .vsix file
-
-      const command = ideCommand(mockConfig);
-      await command!.subCommands![1].action!(mockContext, '');
-
-      expect(globSyncSpy).toHaveBeenCalledWith(
-        expect.stringContaining('.vsix'),
-      );
-      expect(execSyncSpy).toHaveBeenCalledWith(
-        expect.stringMatching(
-          new RegExp(
-            `code(.cmd)? --install-extension ${regexEscape(vsixPath)} --force`,
-          ),
-        ),
-        { stdio: 'pipe' },
-      );
+      expect(core.getIdeInstaller).toHaveBeenCalledWith('vscode');
+      expect(mockInstall).toHaveBeenCalled();
       expect(mockContext.ui.addItem).toHaveBeenCalledWith(
         expect.objectContaining({
           type: 'info',
-          text: `Installing VS Code companion extension...`,
+          text: `Installing IDE companion...`,
         }),
         expect.any(Number),
       );
       expect(mockContext.ui.addItem).toHaveBeenCalledWith(
         expect.objectContaining({
           type: 'info',
-          text: 'VS Code companion extension installed successfully. Restart gemini-cli in a fresh terminal window.',
-        }),
-        expect.any(Number),
-      );
-    });
-
-    it('should install the extension if found in the dev directory', async () => {
-      const vsixPath = '/path/to/dev/gemini.vsix';
-      execSyncSpy.mockReturnValue(''); // VSCode is installed
-      // First glob call for bundle returns nothing, second for dev returns path.
-      globSyncSpy.mockReturnValueOnce([]).mockReturnValueOnce([vsixPath]);
-
-      const command = ideCommand(mockConfig);
-      await command!.subCommands![1].action!(mockContext, '');
-
-      expect(globSyncSpy).toHaveBeenCalledTimes(2);
-      expect(execSyncSpy).toHaveBeenCalledWith(
-        expect.stringMatching(
-          new RegExp(
-            `code(.cmd)? --install-extension ${regexEscape(vsixPath)} --force`,
-          ),
-        ),
-        { stdio: 'pipe' },
-      );
-      expect(mockContext.ui.addItem).toHaveBeenCalledWith(
-        expect.objectContaining({
-          type: 'info',
-          text: 'VS Code companion extension installed successfully. Restart gemini-cli in a fresh terminal window.',
+          text: 'Successfully installed.',
         }),
         expect.any(Number),
       );
     });
 
     it('should show an error if installation fails', async () => {
-      const vsixPath = '/path/to/bundle/gemini.vsix';
-      const errorMessage = 'Installation failed';
-      execSyncSpy
-        .mockReturnValueOnce('') // VSCode is installed check
-        .mockImplementation(() => {
-          // Installation command
-          const error: Error & { stderr?: Buffer } = new Error(
-            'Command failed',
-          );
-          error.stderr = Buffer.from(errorMessage);
-          throw error;
-        });
-      globSyncSpy.mockReturnValue([vsixPath]);
+      mockInstall.mockResolvedValue({
+        success: false,
+        message: 'Installation failed.',
+      });
 
       const command = ideCommand(mockConfig);
-      await command!.subCommands![1].action!(mockContext, '');
+      await command!.subCommands!.find((c) => c.name === 'install')!.action!(
+        mockContext,
+        '',
+      );
 
+      expect(core.getIdeInstaller).toHaveBeenCalledWith('vscode');
+      expect(mockInstall).toHaveBeenCalled();
+      expect(mockContext.ui.addItem).toHaveBeenCalledWith(
+        expect.objectContaining({
+          type: 'info',
+          text: `Installing IDE companion...`,
+        }),
+        expect.any(Number),
+      );
       expect(mockContext.ui.addItem).toHaveBeenCalledWith(
         expect.objectContaining({
           type: 'error',
-          text: `Failed to install VS Code companion extension.`,
+          text: 'Installation failed.',
         }),
         expect.any(Number),
       );

packages/cli/src/ui/commands/ideCommand.ts

@@ -4,154 +4,186 @@
  * SPDX-License-Identifier: Apache-2.0
  */
 
-import { fileURLToPath } from 'url';
-import { Config, IDEConnectionStatus } from '@qwen-code/qwen-code-core';
+import {
+  Config,
+  DetectedIde,
+  IDEConnectionStatus,
+  IdeClient,
+  getIdeDisplayName,
+  getIdeInstaller,
+} from '@qwen-code/qwen-code-core';
 import {
   CommandContext,
   SlashCommand,
   SlashCommandActionReturn,
   CommandKind,
 } from './types.js';
-import * as child_process from 'child_process';
-import * as process from 'process';
-import { glob } from 'glob';
-import * as path from 'path';
+import { SettingScope } from '../../config/settings.js';
 
-const VSCODE_COMMAND = process.platform === 'win32' ? 'code.cmd' : 'code';
-const VSCODE_COMPANION_EXTENSION_FOLDER = 'vscode-ide-companion';
-
-function isVSCodeInstalled(): boolean {
-  try {
-    child_process.execSync(
-      process.platform === 'win32'
-        ? `where.exe ${VSCODE_COMMAND}`
-        : `command -v ${VSCODE_COMMAND}`,
-      { stdio: 'ignore' },
-    );
-    return true;
-  } catch {
-    return false;
+function getIdeStatusMessage(ideClient: IdeClient): {
+  messageType: 'info' | 'error';
+  content: string;
+} {
+  const connection = ideClient.getConnectionStatus();
+  switch (connection.status) {
+    case IDEConnectionStatus.Connected:
+      return {
+        messageType: 'info',
+        content: `🟢 Connected to ${ideClient.getDetectedIdeDisplayName()}`,
+      };
+    case IDEConnectionStatus.Connecting:
+      return {
+        messageType: 'info',
+        content: `🟡 Connecting...`,
+      };
+    default: {
+      let content = `🔴 Disconnected`;
+      if (connection?.details) {
+        content += `: ${connection.details}`;
+      }
+      return {
+        messageType: 'error',
+        content,
+      };
+    }
   }
 }
 
 export const ideCommand = (config: Config | null): SlashCommand | null => {
-  if (!config?.getIdeMode()) {
+  if (!config || !config.getIdeModeFeature()) {
     return null;
   }
+  const ideClient = config.getIdeClient();
+  const currentIDE = ideClient.getCurrentIde();
+  if (!currentIDE || !ideClient.getDetectedIdeDisplayName()) {
+    return {
+      name: 'ide',
+      description: 'manage IDE integration',
+      kind: CommandKind.BUILT_IN,
+      action: (): SlashCommandActionReturn =>
+        ({
+          type: 'message',
+          messageType: 'error',
+          content: `IDE integration is not supported in your current environment. To use this feature, run Gemini CLI in one of these supported IDEs: ${Object.values(
+            DetectedIde,
+          )
+            .map((ide) => getIdeDisplayName(ide))
+            .join(', ')}`,
+        }) as const,
+    };
+  }
 
-  return {
+  const ideSlashCommand: SlashCommand = {
     name: 'ide',
     description: 'manage IDE integration',
     kind: CommandKind.BUILT_IN,
-    subCommands: [
-      {
-        name: 'status',
-        description: 'check status of IDE integration',
-        kind: CommandKind.BUILT_IN,
-        action: (_context: CommandContext): SlashCommandActionReturn => {
-          const connection = config.getIdeClient()?.getConnectionStatus();
-          switch (connection?.status) {
-            case IDEConnectionStatus.Connected:
-              return {
-                type: 'message',
-                messageType: 'info',
-                content: `🟢 Connected`,
-              } as const;
-            case IDEConnectionStatus.Connecting:
-              return {
-                type: 'message',
-                messageType: 'info',
-                content: `🟡 Connecting...`,
-              } as const;
-            default: {
-              let content = `🔴 Disconnected`;
-              if (connection?.details) {
-                content += `: ${connection.details}`;
-              }
-              return {
-                type: 'message',
-                messageType: 'error',
-                content,
-              } as const;
-            }
-          }
-        },
-      },
-      {
-        name: 'install',
-        description: 'install required VS Code companion extension',
-        kind: CommandKind.BUILT_IN,
-        action: async (context) => {
-          if (!isVSCodeInstalled()) {
-            context.ui.addItem(
-              {
-                type: 'error',
-                text: `VS Code command-line tool "${VSCODE_COMMAND}" not found in your PATH.`,
-              },
-              Date.now(),
-            );
-            return;
-          }
-
-          const bundleDir = path.dirname(fileURLToPath(import.meta.url));
-          // The VSIX file is copied to the bundle directory as part of the build.
-          let vsixFiles = glob.sync(path.join(bundleDir, '*.vsix'));
-          if (vsixFiles.length === 0) {
-            // If the VSIX file is not in the bundle, it might be a dev
-            // environment running with `npm start`. Look for it in the original
-            // package location, relative to the bundle dir.
-            const devPath = path.join(
-              bundleDir,
-              '..',
-              '..',
-              '..',
-              '..',
-              '..',
-              VSCODE_COMPANION_EXTENSION_FOLDER,
-              '*.vsix',
-            );
-            vsixFiles = glob.sync(devPath);
-          }
-          if (vsixFiles.length === 0) {
-            context.ui.addItem(
-              {
-                type: 'error',
-                text: 'Could not find the required VS Code companion extension. Please file a bug via /bug.',
-              },
-              Date.now(),
-            );
-            return;
-          }
-
-          const vsixPath = vsixFiles[0];
-          const command = `${VSCODE_COMMAND} --install-extension ${vsixPath} --force`;
-          context.ui.addItem(
-            {
-              type: 'info',
-              text: `Installing VS Code companion extension...`,
-            },
-            Date.now(),
-          );
-          try {
-            child_process.execSync(command, { stdio: 'pipe' });
-            context.ui.addItem(
-              {
-                type: 'info',
-                text: 'VS Code companion extension installed successfully. Restart gemini-cli in a fresh terminal window.',
-              },
-              Date.now(),
-            );
-          } catch (_error) {
-            context.ui.addItem(
-              {
-                type: 'error',
-                text: `Failed to install VS Code companion extension.`,
-              },
-              Date.now(),
-            );
-          }
-        },
-      },
-    ],
+    subCommands: [],
   };
+
+  const statusCommand: SlashCommand = {
+    name: 'status',
+    description: 'check status of IDE integration',
+    kind: CommandKind.BUILT_IN,
+    action: (): SlashCommandActionReturn => {
+      const { messageType, content } = getIdeStatusMessage(ideClient);
+      return {
+        type: 'message',
+        messageType,
+        content,
+      } as const;
+    },
+  };
+
+  const installCommand: SlashCommand = {
+    name: 'install',
+    description: `install required IDE companion for ${ideClient.getDetectedIdeDisplayName()}`,
+    kind: CommandKind.BUILT_IN,
+    action: async (context) => {
+      const installer = getIdeInstaller(currentIDE);
+      if (!installer) {
+        context.ui.addItem(
+          {
+            type: 'error',
+            text: `No installer is available for ${ideClient.getDetectedIdeDisplayName()}. Please install the IDE companion manually from its marketplace.`,
+          },
+          Date.now(),
+        );
+        return;
+      }
+
+      context.ui.addItem(
+        {
+          type: 'info',
+          text: `Installing IDE companion...`,
+        },
+        Date.now(),
+      );
+
+      const result = await installer.install();
+      if (result.success) {
+        config.setIdeMode(true);
+        context.services.settings.setValue(SettingScope.User, 'ideMode', true);
+      }
+      context.ui.addItem(
+        {
+          type: result.success ? 'info' : 'error',
+          text: result.message,
+        },
+        Date.now(),
+      );
+    },
+  };
+
+  const enableCommand: SlashCommand = {
+    name: 'enable',
+    description: 'enable IDE integration',
+    kind: CommandKind.BUILT_IN,
+    action: async (context: CommandContext) => {
+      context.services.settings.setValue(SettingScope.User, 'ideMode', true);
+      await config.setIdeModeAndSyncConnection(true);
+      const { messageType, content } = getIdeStatusMessage(ideClient);
+      context.ui.addItem(
+        {
+          type: messageType,
+          text: content,
+        },
+        Date.now(),
+      );
+    },
+  };
+
+  const disableCommand: SlashCommand = {
+    name: 'disable',
+    description: 'disable IDE integration',
+    kind: CommandKind.BUILT_IN,
+    action: async (context: CommandContext) => {
+      context.services.settings.setValue(SettingScope.User, 'ideMode', false);
+      await config.setIdeModeAndSyncConnection(false);
+      const { messageType, content } = getIdeStatusMessage(ideClient);
+      context.ui.addItem(
+        {
+          type: messageType,
+          text: content,
+        },
+        Date.now(),
+      );
+    },
+  };
+
+  const ideModeEnabled = config.getIdeMode();
+  if (ideModeEnabled) {
+    ideSlashCommand.subCommands = [
+      disableCommand,
+      statusCommand,
+      installCommand,
+    ];
+  } else {
+    ideSlashCommand.subCommands = [
+      enableCommand,
+      statusCommand,
+      installCommand,
+    ];
+  }
+
+  return ideSlashCommand;
 };

packages/cli/src/ui/commands/initCommand.test.ts

@@ -0,0 +1,127 @@
+/**
+ * @license
+ * Copyright 2025 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+import { vi, describe, it, expect, beforeEach, afterEach } from 'vitest';
+import * as fs from 'fs';
+import * as path from 'path';
+import { initCommand } from './initCommand.js';
+import { createMockCommandContext } from '../../test-utils/mockCommandContext.js';
+import { type CommandContext } from './types.js';
+
+// Mock the 'fs' module with both named and default exports to avoid breaking default import sites
+vi.mock('fs', async (importOriginal) => {
+  const actual = await importOriginal<typeof import('fs')>();
+  const existsSync = vi.fn();
+  const writeFileSync = vi.fn();
+  const readFileSync = vi.fn();
+  return {
+    ...actual,
+    existsSync,
+    writeFileSync,
+    readFileSync,
+    default: {
+      ...(actual as unknown as Record<string, unknown>),
+      existsSync,
+      writeFileSync,
+      readFileSync,
+    },
+  } as unknown as typeof import('fs');
+});
+
+describe('initCommand', () => {
+  let mockContext: CommandContext;
+  const targetDir = '/test/dir';
+  const DEFAULT_CONTEXT_FILENAME = 'QWEN.md';
+  const geminiMdPath = path.join(targetDir, DEFAULT_CONTEXT_FILENAME);
+
+  beforeEach(() => {
+    // Create a fresh mock context for each test
+    mockContext = createMockCommandContext({
+      services: {
+        config: {
+          getTargetDir: () => targetDir,
+        },
+      },
+    });
+  });
+
+  afterEach(() => {
+    // Clear all mocks after each test
+    vi.clearAllMocks();
+  });
+
+  it(`should inform the user if ${DEFAULT_CONTEXT_FILENAME} already exists and is non-empty`, async () => {
+    // Arrange: Simulate that the file exists
+    vi.mocked(fs.existsSync).mockReturnValue(true);
+    vi.spyOn(fs, 'readFileSync').mockReturnValue('# Existing content');
+
+    // Act: Run the command's action
+    const result = await initCommand.action!(mockContext, '');
+
+    // Assert: Check for the correct informational message
+    expect(result).toEqual({
+      type: 'message',
+      messageType: 'info',
+      content: `A ${DEFAULT_CONTEXT_FILENAME} file already exists in this directory. No changes were made.`,
+    });
+    // Assert: Ensure no file was written
+    expect(fs.writeFileSync).not.toHaveBeenCalled();
+  });
+
+  it(`should create ${DEFAULT_CONTEXT_FILENAME} and submit a prompt if it does not exist`, async () => {
+    // Arrange: Simulate that the file does not exist
+    vi.mocked(fs.existsSync).mockReturnValue(false);
+
+    // Act: Run the command's action
+    const result = await initCommand.action!(mockContext, '');
+
+    // Assert: Check that writeFileSync was called correctly
+    expect(fs.writeFileSync).toHaveBeenCalledWith(geminiMdPath, '', 'utf8');
+
+    // Assert: Check that an informational message was added to the UI
+    expect(mockContext.ui.addItem).toHaveBeenCalledWith(
+      {
+        type: 'info',
+        text: `Empty ${DEFAULT_CONTEXT_FILENAME} created. Now analyzing the project to populate it.`,
+      },
+      expect.any(Number),
+    );
+
+    // Assert: Check that the correct prompt is submitted
+    expect(result.type).toBe('submit_prompt');
+    expect(result.content).toContain(
+      'You are Qwen Code, an interactive CLI agent',
+    );
+  });
+
+  it(`should proceed to initialize when ${DEFAULT_CONTEXT_FILENAME} exists but is empty`, async () => {
+    vi.mocked(fs.existsSync).mockReturnValue(true);
+    vi.spyOn(fs, 'readFileSync').mockReturnValue('   \n  ');
+
+    const result = await initCommand.action!(mockContext, '');
+
+    expect(fs.writeFileSync).toHaveBeenCalledWith(geminiMdPath, '', 'utf8');
+    expect(result.type).toBe('submit_prompt');
+  });
+
+  it('should return an error if config is not available', async () => {
+    // Arrange: Create a context without config
+    const noConfigContext = createMockCommandContext();
+    if (noConfigContext.services) {
+      noConfigContext.services.config = null;
+    }
+
+    // Act: Run the command's action
+    const result = await initCommand.action!(noConfigContext, '');
+
+    // Assert: Check for the correct error message
+    expect(result).toEqual({
+      type: 'message',
+      messageType: 'error',
+      content: 'Configuration not available.',
+    });
+  });
+});

packages/cli/src/ui/commands/initCommand.ts

@@ -0,0 +1,117 @@
+/**
+ * @license
+ * Copyright 2025 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+import * as fs from 'fs';
+import * as path from 'path';
+import {
+  CommandContext,
+  SlashCommand,
+  SlashCommandActionReturn,
+  CommandKind,
+} from './types.js';
+import { getCurrentGeminiMdFilename } from '@qwen-code/qwen-code-core';
+
+export const initCommand: SlashCommand = {
+  name: 'init',
+  description: 'Analyzes the project and creates a tailored QWEN.md file.',
+  kind: CommandKind.BUILT_IN,
+  action: async (
+    context: CommandContext,
+    _args: string,
+  ): Promise<SlashCommandActionReturn> => {
+    if (!context.services.config) {
+      return {
+        type: 'message',
+        messageType: 'error',
+        content: 'Configuration not available.',
+      };
+    }
+    const targetDir = context.services.config.getTargetDir();
+    const contextFileName = getCurrentGeminiMdFilename();
+    const contextFilePath = path.join(targetDir, contextFileName);
+
+    try {
+      if (fs.existsSync(contextFilePath)) {
+        // If file exists but is empty (or whitespace), continue to initialize; otherwise, bail out
+        try {
+          const existing = fs.readFileSync(contextFilePath, 'utf8');
+          if (existing && existing.trim().length > 0) {
+            return {
+              type: 'message',
+              messageType: 'info',
+              content: `A ${contextFileName} file already exists in this directory. No changes were made.`,
+            };
+          }
+        } catch {
+          // If we fail to read, conservatively proceed to (re)create the file
+        }
+      }
+
+      // Ensure an empty context file exists before prompting the model to populate it
+      try {
+        fs.writeFileSync(contextFilePath, '', 'utf8');
+        context.ui.addItem(
+          {
+            type: 'info',
+            text: `Empty ${contextFileName} created. Now analyzing the project to populate it.`,
+          },
+          Date.now(),
+        );
+      } catch (err) {
+        return {
+          type: 'message',
+          messageType: 'error',
+          content: `Failed to create ${contextFileName}: ${err instanceof Error ? err.message : String(err)}`,
+        };
+      }
+    } catch (error) {
+      return {
+        type: 'message',
+        messageType: 'error',
+        content: `Unexpected error preparing ${contextFileName}: ${error instanceof Error ? error.message : String(error)}`,
+      };
+    }
+
+    return {
+      type: 'submit_prompt',
+      content: `
+You are Qwen Code, an interactive CLI agent. Analyze the current directory and generate a comprehensive ${contextFileName} file to be used as instructional context for future interactions.
+
+**Analysis Process:**
+
+1.  **Initial Exploration:**
+    *   Start by listing the files and directories to get a high-level overview of the structure.
+    *   Read the README file (e.g., \`README.md\`, \`README.txt\`) if it exists. This is often the best place to start.
+
+2.  **Iterative Deep Dive (up to 10 files):**
+    *   Based on your initial findings, select a few files that seem most important (e.g., configuration files, main source files, documentation).
+    *   Read them. As you learn more, refine your understanding and decide which files to read next. You don't need to decide all 10 files at once. Let your discoveries guide your exploration.
+
+3.  **Identify Project Type:**
+    *   **Code Project:** Look for clues like \`package.json\`, \`requirements.txt\`, \`pom.xml\`, \`go.mod\`, \`Cargo.toml\`, \`build.gradle\`, or a \`src\` directory. If you find them, this is likely a software project.
+    *   **Non-Code Project:** If you don't find code-related files, this might be a directory for documentation, research papers, notes, or something else.
+
+**${contextFileName} Content Generation:**
+
+**For a Code Project:**
+
+*   **Project Overview:** Write a clear and concise summary of the project's purpose, main technologies, and architecture.
+*   **Building and Running:** Document the key commands for building, running, and testing the project. Infer these from the files you've read (e.g., \`scripts\` in \`package.json\`, \`Makefile\`, etc.). If you can't find explicit commands, provide a placeholder with a TODO.
+*   **Development Conventions:** Describe any coding styles, testing practices, or contribution guidelines you can infer from the codebase.
+
+**For a Non-Code Project:**
+
+*   **Directory Overview:** Describe the purpose and contents of the directory. What is it for? What kind of information does it hold?
+*   **Key Files:** List the most important files and briefly explain what they contain.
+*   **Usage:** Explain how the contents of this directory are intended to be used.
+
+**Final Output:**
+
+Write the complete content to the \`${contextFileName}\` file. The output must be well-formatted Markdown.
+`,
+    };
+  },
+};

packages/cli/src/ui/commands/mcpCommand.test.ts

@@ -14,15 +14,10 @@ import {
   getMCPDiscoveryState,
   DiscoveredMCPTool,
 } from '@qwen-code/qwen-code-core';
-import open from 'open';
+
 import { MessageActionReturn } from './types.js';
 import { Type, CallableTool } from '@google/genai';
 
-// Mock external dependencies
-vi.mock('open', () => ({
-  default: vi.fn(),
-}));
-
 vi.mock('@qwen-code/qwen-code-core', async (importOriginal) => {
   const actual =
     await importOriginal<typeof import('@qwen-code/qwen-code-core')>();
@@ -144,30 +139,15 @@ describe('mcpCommand', () => {
       mockConfig.getMcpServers = vi.fn().mockReturnValue({});
     });
 
-    it('should display a message with a URL when no MCP servers are configured in a sandbox', async () => {
-      process.env.SANDBOX = 'sandbox';
-
+    it('should display a message with a URL when no MCP servers are configured', async () => {
       const result = await mcpCommand.action!(mockContext, '');
 
       expect(result).toEqual({
         type: 'message',
         messageType: 'info',
         content:
-          'No MCP servers configured. Please open the following URL in your browser to view documentation:\nhttps://goo.gle/gemini-cli-docs-mcp',
+          'No MCP servers configured. Please view MCP documentation in your browser: https://goo.gle/gemini-cli-docs-mcp or use the cli /docs command',
       });
-      expect(open).not.toHaveBeenCalled();
-    });
-
-    it('should display a message and open a URL when no MCP servers are configured outside a sandbox', async () => {
-      const result = await mcpCommand.action!(mockContext, '');
-
-      expect(result).toEqual({
-        type: 'message',
-        messageType: 'info',
-        content:
-          'No MCP servers configured. Opening documentation in your browser: https://goo.gle/gemini-cli-docs-mcp',
-      });
-      expect(open).toHaveBeenCalledWith('https://goo.gle/gemini-cli-docs-mcp');
     });
   });
 
@@ -232,9 +212,9 @@ describe('mcpCommand', () => {
         );
         expect(message).toContain('server2_tool1');
 
-        // Server 3 - Disconnected
+        // Server 3 - Disconnected but with cached tools, so shows as Ready
         expect(message).toContain(
-          '🔴 \u001b[1mserver3\u001b[0m - Disconnected (1 tools cached)',
+          '🟢 \u001b[1mserver3\u001b[0m - Ready (1 tool)',
         );
         expect(message).toContain('server3_tool1');
 

packages/cli/src/ui/commands/mcpCommand.ts

@@ -21,7 +21,6 @@ import {
   mcpServerRequiresOAuth,
   getErrorMessage,
 } from '@qwen-code/qwen-code-core';
-import open from 'open';
 
 const COLOR_GREEN = '\u001b[32m';
 const COLOR_YELLOW = '\u001b[33m';
@@ -60,21 +59,11 @@ const getMcpStatus = async (
 
   if (serverNames.length === 0 && blockedMcpServers.length === 0) {
     const docsUrl = 'https://goo.gle/gemini-cli-docs-mcp';
-    if (process.env.SANDBOX && process.env.SANDBOX !== 'sandbox-exec') {
-      return {
-        type: 'message',
-        messageType: 'info',
-        content: `No MCP servers configured. Please open the following URL in your browser to view documentation:\n${docsUrl}`,
-      };
-    } else {
-      // Open the URL in the browser
-      await open(docsUrl);
-      return {
-        type: 'message',
-        messageType: 'info',
-        content: `No MCP servers configured. Opening documentation in your browser: ${docsUrl}`,
-      };
-    }
+    return {
+      type: 'message',
+      messageType: 'info',
+      content: `No MCP servers configured. Please view MCP documentation in your browser: ${docsUrl} or use the cli /docs command`,
+    };
   }
 
   // Check if any servers are still connecting
@@ -105,7 +94,15 @@ const getMcpStatus = async (
     const promptRegistry = await config.getPromptRegistry();
     const serverPrompts = promptRegistry.getPromptsByServer(serverName) || [];
 
-    const status = getMCPServerStatus(serverName);
+    const originalStatus = getMCPServerStatus(serverName);
+    const hasCachedItems = serverTools.length > 0 || serverPrompts.length > 0;
+
+    // If the server is "disconnected" but has prompts or cached tools, display it as Ready
+    // by using CONNECTED as the display status.
+    const status =
+      originalStatus === MCPServerStatus.DISCONNECTED && hasCachedItems
+        ? MCPServerStatus.CONNECTED
+        : originalStatus;
 
     // Add status indicator with descriptive text
     let statusIndicator = '';
@@ -271,11 +268,14 @@ const getMcpStatus = async (
       message += '  No tools or prompts available\n';
     } else if (serverTools.length === 0) {
       message += '  No tools available';
-      if (status === MCPServerStatus.DISCONNECTED && needsAuthHint) {
+      if (originalStatus === MCPServerStatus.DISCONNECTED && needsAuthHint) {
         message += ` ${COLOR_GREY}(type: "/mcp auth ${serverName}" to authenticate this server)${RESET_COLOR}`;
       }
       message += '\n';
-    } else if (status === MCPServerStatus.DISCONNECTED && needsAuthHint) {
+    } else if (
+      originalStatus === MCPServerStatus.DISCONNECTED &&
+      needsAuthHint
+    ) {
       // This case is for when serverTools.length > 0
       message += `  ${COLOR_GREY}(type: "/mcp auth ${serverName}" to authenticate this server)${RESET_COLOR}\n`;
     }

packages/cli/src/ui/commands/memoryCommand.test.ts

@@ -161,6 +161,10 @@ describe('memoryCommand', () => {
         getDebugMode: () => false,
         getFileService: () => ({}) as FileDiscoveryService,
         getExtensionContextFilePaths: () => [],
+        shouldLoadMemoryFromIncludeDirectories: () => false,
+        getWorkspaceContext: () => ({
+          getDirectories: () => [],
+        }),
         getFileFilteringOptions: () => ({
           ignore: [],
           include: [],

packages/cli/src/ui/commands/memoryCommand.ts

@@ -89,9 +89,13 @@ export const memoryCommand: SlashCommand = {
             const { memoryContent, fileCount } =
               await loadServerHierarchicalMemory(
                 config.getWorkingDir(),
+                config.shouldLoadMemoryFromIncludeDirectories()
+                  ? config.getWorkspaceContext().getDirectories()
+                  : [],
                 config.getDebugMode(),
                 config.getFileService(),
                 config.getExtensionContextFilePaths(),
+                context.services.settings.merged.memoryImportFormat || 'tree', // Use setting or default to 'tree'
                 config.getFileFilteringOptions(),
                 context.services.settings.merged.memoryDiscoveryMaxDirs,
               );

packages/cli/src/ui/commands/setupGithubCommand.test.ts

@@ -0,0 +1,66 @@
+/**
+ * @license
+ * Copyright 2025 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+import { vi, describe, expect, it, afterEach, beforeEach } from 'vitest';
+import * as child_process from 'child_process';
+import { setupGithubCommand } from './setupGithubCommand.js';
+import { CommandContext, ToolActionReturn } from './types.js';
+
+vi.mock('child_process');
+
+describe('setupGithubCommand', () => {
+  beforeEach(() => {
+    vi.resetAllMocks();
+  });
+
+  afterEach(() => {
+    vi.restoreAllMocks();
+  });
+
+  it('returns a tool action to download github workflows and handles paths', () => {
+    const fakeRepoRoot = '/github.com/fake/repo/root';
+    vi.mocked(child_process.execSync).mockReturnValue(fakeRepoRoot);
+
+    const result = setupGithubCommand.action?.(
+      {} as CommandContext,
+      '',
+    ) as ToolActionReturn;
+
+    expect(result.type).toBe('tool');
+    expect(result.toolName).toBe('run_shell_command');
+    expect(child_process.execSync).toHaveBeenCalledWith(
+      'git rev-parse --show-toplevel',
+      {
+        encoding: 'utf-8',
+      },
+    );
+    expect(child_process.execSync).toHaveBeenCalledWith('git remote -v', {
+      encoding: 'utf-8',
+    });
+
+    const { command } = result.toolArgs;
+
+    const expectedSubstrings = [
+      `mkdir -p "${fakeRepoRoot}/.github/workflows"`,
+      `curl -fsSL -o "${fakeRepoRoot}/.github/workflows/gemini-cli.yml"`,
+      `curl -fsSL -o "${fakeRepoRoot}/.github/workflows/gemini-issue-automated-triage.yml"`,
+      `curl -fsSL -o "${fakeRepoRoot}/.github/workflows/gemini-issue-scheduled-triage.yml"`,
+      `curl -fsSL -o "${fakeRepoRoot}/.github/workflows/gemini-pr-review.yml"`,
+      'https://raw.githubusercontent.com/google-github-actions/run-gemini-cli/refs/tags/v0/examples/workflows/',
+    ];
+
+    for (const substring of expectedSubstrings) {
+      expect(command).toContain(substring);
+    }
+  });
+
+  it('throws an error if git root cannot be determined', () => {
+    vi.mocked(child_process.execSync).mockReturnValue('');
+    expect(() => {
+      setupGithubCommand.action?.({} as CommandContext, '');
+    }).toThrow('Unable to determine the Git root directory.');
+  });
+});

packages/cli/src/ui/commands/setupGithubCommand.ts

@@ -0,0 +1,59 @@
+/**
+ * @license
+ * Copyright 2025 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+import path from 'path';
+import { execSync } from 'child_process';
+import { isGitHubRepository } from '../../utils/gitUtils.js';
+
+import {
+  CommandKind,
+  SlashCommand,
+  SlashCommandActionReturn,
+} from './types.js';
+
+export const setupGithubCommand: SlashCommand = {
+  name: 'setup-github',
+  description: 'Set up GitHub Actions',
+  kind: CommandKind.BUILT_IN,
+  action: (): SlashCommandActionReturn => {
+    const gitRootRepo = execSync('git rev-parse --show-toplevel', {
+      encoding: 'utf-8',
+    }).trim();
+
+    if (!isGitHubRepository()) {
+      throw new Error('Unable to determine the Git root directory.');
+    }
+
+    const version = 'v0';
+    const workflowBaseUrl = `https://raw.githubusercontent.com/google-github-actions/run-gemini-cli/refs/tags/${version}/examples/workflows/`;
+
+    const workflows = [
+      'gemini-cli/gemini-cli.yml',
+      'issue-triage/gemini-issue-automated-triage.yml',
+      'issue-triage/gemini-issue-scheduled-triage.yml',
+      'pr-review/gemini-pr-review.yml',
+    ];
+
+    const command = [
+      'set -e',
+      `mkdir -p "${gitRootRepo}/.github/workflows"`,
+      ...workflows.map((workflow) => {
+        const fileName = path.basename(workflow);
+        return `curl -fsSL -o "${gitRootRepo}/.github/workflows/${fileName}" "${workflowBaseUrl}/${workflow}"`;
+      }),
+      'echo "Workflows downloaded successfully."',
+    ].join(' && ');
+    return {
+      type: 'tool',
+      toolName: 'run_shell_command',
+      toolArgs: {
+        description:
+          'Setting up GitHub Actions to triage issues and review PRs with Gemini.',
+        command,
+      },
+    };
+  },
+};

packages/cli/src/ui/commands/types.ts

@@ -59,6 +59,7 @@ export interface CommandContext {
     /** Toggles a special display mode. */
     toggleCorgiMode: () => void;
     toggleVimEnabled: () => Promise<boolean>;
+    setGeminiMdFileCount: (count: number) => void;
   };
   // Session-specific data
   session: {
@@ -99,7 +100,7 @@ export interface MessageActionReturn {
  */
 export interface OpenDialogActionReturn {
   type: 'dialog';
-  dialog: 'help' | 'auth' | 'theme' | 'editor' | 'privacy';
+  dialog: 'auth' | 'theme' | 'editor' | 'privacy';
 }
 
 /**
@@ -158,6 +159,9 @@ export interface SlashCommand {
 
   kind: CommandKind;
 
+  // Optional metadata for extension commands
+  extensionName?: string;
+
   // The action to run. Optional for parent commands that only group sub-commands.
   action?: (
     context: CommandContext,

packages/cli/src/ui/components/AuthDialog.test.tsx

@@ -189,7 +189,7 @@ describe('AuthDialog', () => {
       );
 
       // This is a bit brittle, but it's the best way to check which item is selected.
-      expect(lastFrame()).toContain('● 1. OpenAI');
+      expect(lastFrame()).toContain('● 2. OpenAI');
     });
 
     it('should fall back to default if GEMINI_DEFAULT_AUTH_TYPE is not set', () => {
@@ -217,8 +217,8 @@ describe('AuthDialog', () => {
         <AuthDialog onSelect={() => {}} settings={settings} />,
       );
 
-      // Default is OpenAI (only option available)
-      expect(lastFrame()).toContain('● 1. OpenAI');
+      // Default is Qwen OAuth (first option)
+      expect(lastFrame()).toContain('● 1. Qwen OAuth');
     });
 
     it('should show an error and fall back to default if GEMINI_DEFAULT_AUTH_TYPE is invalid', () => {
@@ -249,8 +249,8 @@ describe('AuthDialog', () => {
       );
 
       // Since the auth dialog doesn't show GEMINI_DEFAULT_AUTH_TYPE errors anymore,
-      // it will just show the default OpenAI option
-      expect(lastFrame()).toContain('● 1. OpenAI');
+      // it will just show the default Qwen OAuth option
+      expect(lastFrame()).toContain('● 1. Qwen OAuth');
     });
   });
 

packages/cli/src/ui/components/AuthDialog.tsx

@@ -45,7 +45,10 @@ export function AuthDialog({
     initialErrorMessage || null,
   );
   const [showOpenAIKeyPrompt, setShowOpenAIKeyPrompt] = useState(false);
-  const items = [{ label: 'OpenAI', value: AuthType.USE_OPENAI }];
+  const items = [
+    { label: 'Qwen OAuth', value: AuthType.QWEN_OAUTH },
+    { label: 'OpenAI', value: AuthType.USE_OPENAI },
+  ];
 
   const initialAuthIndex = Math.max(
     0,
@@ -65,6 +68,10 @@ export function AuthDialog({
         return item.value === AuthType.USE_GEMINI;
       }
 
+      if (process.env.QWEN_OAUTH_TOKEN) {
+        return item.value === AuthType.QWEN_OAUTH;
+      }
+
       return item.value === AuthType.LOGIN_WITH_GOOGLE;
     }),
   );

packages/cli/src/ui/components/ContextSummaryDisplay.tsx

@@ -8,7 +8,7 @@ import React from 'react';
 import { Text } from 'ink';
 import { Colors } from '../colors.js';
 import {
-  type OpenFiles,
+  type IdeContext,
   type MCPServerConfig,
 } from '@qwen-code/qwen-code-core';
 
@@ -18,7 +18,7 @@ interface ContextSummaryDisplayProps {
   mcpServers?: Record<string, MCPServerConfig>;
   blockedMcpServers?: Array<{ name: string; extensionName: string }>;
   showToolDescriptions?: boolean;
-  openFiles?: OpenFiles;
+  ideContext?: IdeContext;
 }
 
 export const ContextSummaryDisplay: React.FC<ContextSummaryDisplayProps> = ({
@@ -27,26 +27,28 @@ export const ContextSummaryDisplay: React.FC<ContextSummaryDisplayProps> = ({
   mcpServers,
   blockedMcpServers,
   showToolDescriptions,
-  openFiles,
+  ideContext,
 }) => {
   const mcpServerCount = Object.keys(mcpServers || {}).length;
   const blockedMcpServerCount = blockedMcpServers?.length || 0;
+  const openFileCount = ideContext?.workspaceState?.openFiles?.length ?? 0;
 
   if (
     geminiMdFileCount === 0 &&
     mcpServerCount === 0 &&
     blockedMcpServerCount === 0 &&
-    (openFiles?.recentOpenFiles?.length ?? 0) === 0
+    openFileCount === 0
   ) {
     return <Text> </Text>; // Render an empty space to reserve height
   }
 
-  const recentFilesText = (() => {
-    const count = openFiles?.recentOpenFiles?.length ?? 0;
-    if (count === 0) {
+  const openFilesText = (() => {
+    if (openFileCount === 0) {
       return '';
     }
-    return `${count} recent file${count > 1 ? 's' : ''} (ctrl+e to view)`;
+    return `${openFileCount} open file${
+      openFileCount > 1 ? 's' : ''
+    } (ctrl+e to view)`;
   })();
 
   const geminiMdText = (() => {
@@ -84,8 +86,8 @@ export const ContextSummaryDisplay: React.FC<ContextSummaryDisplayProps> = ({
 
   let summaryText = 'Using: ';
   const summaryParts = [];
-  if (recentFilesText) {
-    summaryParts.push(recentFilesText);
+  if (openFilesText) {
+    summaryParts.push(openFilesText);
   }
   if (geminiMdText) {
     summaryParts.push(geminiMdText);

packages/cli/src/ui/components/DebugProfiler.tsx

@@ -0,0 +1,32 @@
+/**
+ * @license
+ * Copyright 2025 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+import { Text, useInput } from 'ink';
+import { useEffect, useRef, useState } from 'react';
+import { Colors } from '../colors.js';
+
+export const DebugProfiler = () => {
+  const numRenders = useRef(0);
+  const [showNumRenders, setShowNumRenders] = useState(false);
+
+  useEffect(() => {
+    numRenders.current++;
+  });
+
+  useInput((input, key) => {
+    if (key.ctrl && input === 'b') {
+      setShowNumRenders((prev) => !prev);
+    }
+  });
+
+  if (!showNumRenders) {
+    return null;
+  }
+
+  return (
+    <Text color={Colors.AccentYellow}>Renders: {numRenders.current} </Text>
+  );
+};

packages/cli/src/ui/components/Footer.tsx

@@ -17,6 +17,8 @@ import process from 'node:process';
 import Gradient from 'ink-gradient';
 import { MemoryUsageDisplay } from './MemoryUsageDisplay.js';
 
+import { DebugProfiler } from './DebugProfiler.js';
+
 interface FooterProps {
   model: string;
   targetDir: string;
@@ -52,6 +54,7 @@ export const Footer: React.FC<FooterProps> = ({
   return (
     <Box justifyContent="space-between" width="100%">
       <Box>
+        {debugMode && <DebugProfiler />}
         {vimMode && <Text color={Colors.Gray}>[{vimMode}] </Text>}
         {nightly ? (
           <Gradient colors={Colors.GradientColors}>