fix/gemini extension install error

.github/workflows/release-sdk.yml

@@ -34,8 +34,7 @@ on:
         default: false
 
 concurrency:
-  # Serialize all release workflows (CLI + SDK) to avoid racing on `main` pushes.
-  group: 'release-main'
+  group: '${{ github.workflow }}'
   cancel-in-progress: false
 
 jobs:
@@ -51,6 +50,7 @@ jobs:
       packages: 'write'
       id-token: 'write'
       issues: 'write'
+      pull-requests: 'write'
     outputs:
       RELEASE_TAG: '${{ steps.version.outputs.RELEASE_TAG }}'
 
@@ -128,13 +128,12 @@ jobs:
           IS_PREVIEW: '${{ steps.vars.outputs.is_preview }}'
           MANUAL_VERSION: '${{ inputs.version }}'
 
-      - name: 'Set SDK package version'
+      - name: 'Set SDK package version (local only)'
         env:
           RELEASE_VERSION: '${{ steps.version.outputs.RELEASE_VERSION }}'
         run: |-
           # Ensure the package version matches the computed release version.
           # This is required for nightly/preview because npm does not allow re-publishing the same version.
-          # Using --no-git-tag-version because we create tags via GitHub Release, not npm.
           npm version -w @qwen-code/sdk "${RELEASE_VERSION}" --no-git-tag-version --allow-same-version
 
       - name: 'Build CLI Bundle'
@@ -169,40 +168,37 @@ jobs:
           git config user.name "github-actions[bot]"
           git config user.email "github-actions[bot]@users.noreply.github.com"
 
-      - name: 'Create and switch to a release branch (stable only)'
+      - name: 'Build SDK'
+        working-directory: 'packages/sdk-typescript'
+        run: |-
+          npm run build
+
+      - name: 'Publish @qwen-code/sdk'
+        working-directory: 'packages/sdk-typescript'
+        run: |-
+          npm publish --access public --tag=${{ steps.version.outputs.NPM_TAG }} ${{ steps.vars.outputs.is_dry_run == 'true' && '--dry-run' || '' }}
+        env:
+          NODE_AUTH_TOKEN: '${{ secrets.NPM_TOKEN }}'
+
+      - name: 'Create and switch to a release branch'
         if: |-
           ${{ steps.vars.outputs.is_dry_run == 'false' && steps.vars.outputs.is_nightly == 'false' && steps.vars.outputs.is_preview == 'false' }}
         id: 'release_branch'
         env:
           RELEASE_TAG: '${{ steps.version.outputs.RELEASE_TAG }}'
         run: |-
-          set -euo pipefail
           BRANCH_NAME="release/sdk-typescript/${RELEASE_TAG}"
-
-          # Make reruns idempotent: reuse an existing remote branch if it already exists.
-          if git show-ref --verify --quiet "refs/heads/${BRANCH_NAME}"; then
-            git switch "${BRANCH_NAME}"
-          elif git ls-remote --exit-code --heads origin "${BRANCH_NAME}" >/dev/null 2>&1; then
-            git fetch origin "${BRANCH_NAME}:${BRANCH_NAME}"
-            git switch "${BRANCH_NAME}"
-          else
-            git switch -c "${BRANCH_NAME}"
-          fi
-
+          git switch -c "${BRANCH_NAME}"
           echo "BRANCH_NAME=${BRANCH_NAME}" >> "${GITHUB_OUTPUT}"
 
-      - name: 'Build SDK'
-        working-directory: 'packages/sdk-typescript'
-        run: |-
-          npm run build
-
-      - name: 'Commit and Push package version to release branch (stable only)'
+      - name: 'Commit and Push package version (stable only)'
         if: |-
           ${{ steps.vars.outputs.is_dry_run == 'false' && steps.vars.outputs.is_nightly == 'false' && steps.vars.outputs.is_preview == 'false' }}
         env:
           BRANCH_NAME: '${{ steps.release_branch.outputs.BRANCH_NAME }}'
           RELEASE_TAG: '${{ steps.version.outputs.RELEASE_TAG }}'
         run: |-
+          # Only persist version bumps after a successful publish.
           git add packages/sdk-typescript/package.json package-lock.json
           if git diff --staged --quiet; then
             echo "No version changes to commit"
@@ -212,47 +208,9 @@ jobs:
           echo "Pushing release branch to remote..."
           git push --set-upstream origin "${BRANCH_NAME}" --follow-tags
 
-      - name: 'Check if @qwen-code/sdk version is already published (rerun safety)'
-        id: 'npm_check'
-        env:
-          RELEASE_VERSION: '${{ steps.version.outputs.RELEASE_VERSION }}'
-        run: |-
-          set -euo pipefail
-          if npm view "@qwen-code/sdk@${RELEASE_VERSION}" version >/dev/null 2>&1; then
-            echo "already_published=true" >> "${GITHUB_OUTPUT}"
-            echo "@qwen-code/sdk@${RELEASE_VERSION} already exists on npm."
-          else
-            echo "already_published=false" >> "${GITHUB_OUTPUT}"
-          fi
-
-      - name: 'Publish @qwen-code/sdk'
-        working-directory: 'packages/sdk-typescript'
-        if: |-
-          ${{ steps.vars.outputs.is_dry_run == 'true' || steps.npm_check.outputs.already_published != 'true' }}
-        run: |-
-          npm publish --access public --tag=${{ steps.version.outputs.NPM_TAG }} ${{ steps.vars.outputs.is_dry_run == 'true' && '--dry-run' || '' }}
-        env:
-          NODE_AUTH_TOKEN: '${{ secrets.NPM_TOKEN }}'
-
-      - name: 'Check if GitHub Release already exists (rerun safety)'
-        if: |-
-          ${{ steps.vars.outputs.is_dry_run == 'false' }}
-        id: 'gh_release_check'
-        env:
-          GITHUB_TOKEN: '${{ secrets.GITHUB_TOKEN }}'
-          RELEASE_TAG: '${{ steps.version.outputs.RELEASE_TAG }}'
-        run: |-
-          set -euo pipefail
-          if gh release view "sdk-typescript-${RELEASE_TAG}" >/dev/null 2>&1; then
-            echo "already_exists=true" >> "${GITHUB_OUTPUT}"
-            echo "GitHub Release sdk-typescript-${RELEASE_TAG} already exists."
-          else
-            echo "already_exists=false" >> "${GITHUB_OUTPUT}"
-          fi
-
       - name: 'Create GitHub Release and Tag'
         if: |-
-          ${{ steps.vars.outputs.is_dry_run == 'false' && steps.gh_release_check.outputs.already_exists != 'true' }}
+          ${{ steps.vars.outputs.is_dry_run == 'false' }}
         env:
           GITHUB_TOKEN: '${{ secrets.GITHUB_TOKEN }}'
           RELEASE_BRANCH: '${{ steps.release_branch.outputs.BRANCH_NAME }}'
@@ -278,27 +236,48 @@ jobs:
             --generate-notes \
             ${PRERELEASE_FLAG}
 
-      - name: 'Create release PR for SDK version bump'
+      - name: 'Create PR to merge release branch into main'
         if: |-
           ${{ steps.vars.outputs.is_dry_run == 'false' && steps.vars.outputs.is_nightly == 'false' && steps.vars.outputs.is_preview == 'false' }}
+        id: 'pr'
         env:
-          GH_TOKEN: '${{ secrets.CI_BOT_PAT }}'
-          RELEASE_TAG: '${{ steps.version.outputs.RELEASE_TAG }}'
+          GITHUB_TOKEN: '${{ secrets.GITHUB_TOKEN }}'
           RELEASE_BRANCH: '${{ steps.release_branch.outputs.BRANCH_NAME }}'
+          RELEASE_TAG: '${{ steps.version.outputs.RELEASE_TAG }}'
         run: |-
           set -euo pipefail
 
-          pr_exists=$(gh pr list --head "${RELEASE_BRANCH}" --state open --json number --jq 'length')
-          if [[ "${pr_exists}" != "0" ]]; then
-            echo "Open PR already exists for ${RELEASE_BRANCH}; skipping creation."
-            exit 0
+          pr_url="$(gh pr list --head "${RELEASE_BRANCH}" --base main --json url --jq '.[0].url')"
+          if [[ -z "${pr_url}" ]]; then
+            pr_url="$(gh pr create \
+              --base main \
+              --head "${RELEASE_BRANCH}" \
+              --title "chore(release): sdk-typescript ${RELEASE_TAG}" \
+              --body "Automated release PR for sdk-typescript ${RELEASE_TAG}.")"
           fi
 
-          gh pr create \
-            --base main \
-            --head "${RELEASE_BRANCH}" \
-            --title "chore(release): sdk-typescript ${RELEASE_TAG}" \
-            --body "Automated SDK version bump for ${RELEASE_TAG}."
+          echo "PR_URL=${pr_url}" >> "${GITHUB_OUTPUT}"
+
+      - name: 'Wait for CI checks to complete'
+        if: |-
+          ${{ steps.vars.outputs.is_dry_run == 'false' && steps.vars.outputs.is_nightly == 'false' && steps.vars.outputs.is_preview == 'false' }}
+        env:
+          GITHUB_TOKEN: '${{ secrets.GITHUB_TOKEN }}'
+          PR_URL: '${{ steps.pr.outputs.PR_URL }}'
+        run: |-
+          set -euo pipefail
+          echo "Waiting for CI checks to complete..."
+          gh pr checks "${PR_URL}" --watch --interval 30
+
+      - name: 'Enable auto-merge for release PR'
+        if: |-
+          ${{ steps.vars.outputs.is_dry_run == 'false' && steps.vars.outputs.is_nightly == 'false' && steps.vars.outputs.is_preview == 'false' }}
+        env:
+          GITHUB_TOKEN: '${{ secrets.GITHUB_TOKEN }}'
+          PR_URL: '${{ steps.pr.outputs.PR_URL }}'
+        run: |-
+          set -euo pipefail
+          gh pr merge "${PR_URL}" --merge --auto
 
       - name: 'Create Issue on Failure'
         if: |-

.github/workflows/release.yml

@@ -38,11 +38,6 @@ on:
         type: 'boolean'
         default: false
 
-concurrency:
-  # Serialize all release workflows (CLI + SDK) to avoid racing on `main` pushes.
-  group: 'release-main'
-  cancel-in-progress: false
-
 jobs:
   release:
     runs-on: 'ubuntu-latest'
@@ -155,19 +150,8 @@ jobs:
         env:
           RELEASE_TAG: '${{ steps.version.outputs.RELEASE_TAG }}'
         run: |-
-          set -euo pipefail
           BRANCH_NAME="release/${RELEASE_TAG}"
-
-          # Make reruns idempotent: reuse an existing remote branch if it already exists.
-          if git show-ref --verify --quiet "refs/heads/${BRANCH_NAME}"; then
-            git switch "${BRANCH_NAME}"
-          elif git ls-remote --exit-code --heads origin "${BRANCH_NAME}" >/dev/null 2>&1; then
-            git fetch origin "${BRANCH_NAME}:${BRANCH_NAME}"
-            git switch "${BRANCH_NAME}"
-          else
-            git switch -c "${BRANCH_NAME}"
-          fi
-
+          git switch -c "${BRANCH_NAME}"
           echo "BRANCH_NAME=${BRANCH_NAME}" >> "${GITHUB_OUTPUT}"
 
       - name: 'Update package versions'
@@ -207,47 +191,16 @@ jobs:
           registry-url: 'https://registry.npmjs.org'
           scope: '@qwen-code'
 
-      - name: 'Check if @qwen-code/qwen-code version is already published (rerun safety)'
-        id: 'npm_check'
-        env:
-          RELEASE_VERSION: '${{ steps.version.outputs.RELEASE_VERSION }}'
-        run: |-
-          set -euo pipefail
-          if npm view "@qwen-code/qwen-code@${RELEASE_VERSION}" version >/dev/null 2>&1; then
-            echo "already_published=true" >> "${GITHUB_OUTPUT}"
-            echo "@qwen-code/qwen-code@${RELEASE_VERSION} already exists on npm."
-          else
-            echo "already_published=false" >> "${GITHUB_OUTPUT}"
-          fi
-
       - name: 'Publish @qwen-code/qwen-code'
         working-directory: 'dist'
-        if: |-
-          ${{ steps.vars.outputs.is_dry_run == 'true' || steps.npm_check.outputs.already_published != 'true' }}
         run: |-
           npm publish --access public --tag=${{ steps.version.outputs.NPM_TAG }} ${{ steps.vars.outputs.is_dry_run == 'true' && '--dry-run' || '' }}
         env:
           NODE_AUTH_TOKEN: '${{ secrets.NPM_TOKEN }}'
 
-      - name: 'Check if GitHub Release already exists (rerun safety)'
-        if: |-
-          ${{ steps.vars.outputs.is_dry_run == 'false' }}
-        id: 'gh_release_check'
-        env:
-          GITHUB_TOKEN: '${{ secrets.GITHUB_TOKEN }}'
-          RELEASE_TAG: '${{ steps.version.outputs.RELEASE_TAG }}'
-        run: |-
-          set -euo pipefail
-          if gh release view "${RELEASE_TAG}" >/dev/null 2>&1; then
-            echo "already_exists=true" >> "${GITHUB_OUTPUT}"
-            echo "GitHub Release ${RELEASE_TAG} already exists."
-          else
-            echo "already_exists=false" >> "${GITHUB_OUTPUT}"
-          fi
-
       - name: 'Create GitHub Release and Tag'
         if: |-
-          ${{ steps.vars.outputs.is_dry_run == 'false' && steps.gh_release_check.outputs.already_exists != 'true' }}
+          ${{ steps.vars.outputs.is_dry_run == 'false' }}
         env:
           GITHUB_TOKEN: '${{ secrets.GITHUB_TOKEN }}'
           RELEASE_BRANCH: '${{ steps.release_branch.outputs.BRANCH_NAME }}'
@@ -261,34 +214,12 @@ jobs:
             --notes-start-tag "$PREVIOUS_RELEASE_TAG" \
             --generate-notes
 
-      - name: 'Create release PR for version bump'
-        if: |-
-          ${{ steps.vars.outputs.is_dry_run == 'false' && steps.vars.outputs.is_nightly == 'false' && steps.vars.outputs.is_preview == 'false' }}
-        env:
-          GH_TOKEN: '${{ secrets.CI_BOT_PAT }}'
-          RELEASE_TAG: '${{ steps.version.outputs.RELEASE_TAG }}'
-          RELEASE_BRANCH: '${{ steps.release_branch.outputs.BRANCH_NAME }}'
-        run: |-
-          set -euo pipefail
-
-          pr_exists=$(gh pr list --head "${RELEASE_BRANCH}" --state open --json number --jq 'length')
-          if [[ "${pr_exists}" != "0" ]]; then
-            echo "Open PR already exists for ${RELEASE_BRANCH}; skipping creation."
-            exit 0
-          fi
-
-          gh pr create \
-            --base main \
-            --head "${RELEASE_BRANCH}" \
-            --title "chore(release): ${RELEASE_TAG}" \
-            --body "Automated version bump for ${RELEASE_TAG}."
-
       - name: 'Create Issue on Failure'
         if: |-
           ${{ failure() }}
         env:
           GITHUB_TOKEN: '${{ secrets.GITHUB_TOKEN }}'
-          RELEASE_TAG: "${{ steps.version.outputs.RELEASE_TAG || 'N/A' }}"
+          RELEASE_TAG: '${{ steps.version.outputs.RELEASE_TAG }} || "N/A"'
           DETAILS_URL: '${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }}'
         run: |-
           gh issue create \

.gitignore

@@ -23,6 +23,7 @@ package-lock.json
 .idea
 *.iml
 .cursor
+.qoder
 
 # OS metadata
 .DS_Store

package-lock.json

@@ -3875,6 +3875,17 @@
       "dev": true,
       "license": "MIT"
     },
+    "node_modules/@types/prompts": {
+      "version": "2.4.9",
+      "resolved": "https://registry.npmjs.org/@types/prompts/-/prompts-2.4.9.tgz",
+      "integrity": "sha512-qTxFi6Buiu8+50/+3DGIWLHM6QuWsEKugJnnP6iv2Mc4ncxE4A/OJkjuVOA+5X0X1S/nq5VJRa8Lu+nwcvbrKA==",
+      "dev": true,
+      "license": "MIT",
+      "dependencies": {
+        "@types/node": "*",
+        "kleur": "^3.0.3"
+      }
+    },
     "node_modules/@types/prop-types": {
       "version": "15.7.15",
       "resolved": "https://registry.npmjs.org/@types/prop-types/-/prop-types-15.7.15.tgz",
@@ -10984,6 +10995,15 @@
         "json-buffer": "3.0.1"
       }
     },
+    "node_modules/kleur": {
+      "version": "3.0.3",
+      "resolved": "https://registry.npmjs.org/kleur/-/kleur-3.0.3.tgz",
+      "integrity": "sha512-eTIzlVOSUR+JxdDFepEYcBMtZ9Qqdef+rnzWdRZuMbOywu5tO2w2N7rqjoANZ5k9vywhL6Br1VRjUIgTQx4E8w==",
+      "license": "MIT",
+      "engines": {
+        "node": ">=6"
+      }
+    },
     "node_modules/ky": {
       "version": "1.8.1",
       "resolved": "https://registry.npmjs.org/ky/-/ky-1.8.1.tgz",
@@ -13393,6 +13413,19 @@
       "dev": true,
       "license": "MIT"
     },
+    "node_modules/prompts": {
+      "version": "2.4.2",
+      "resolved": "https://registry.npmjs.org/prompts/-/prompts-2.4.2.tgz",
+      "integrity": "sha512-NxNv/kLguCA7p3jE8oL2aEBsrJWgAakBpgmgK6lpPWV+WuOmY6r2/zbAVnP+T8bQlA0nzHXSJSJW0Hq7ylaD2Q==",
+      "license": "MIT",
+      "dependencies": {
+        "kleur": "^3.0.3",
+        "sisteransi": "^1.0.5"
+      },
+      "engines": {
+        "node": ">= 6"
+      }
+    },
     "node_modules/prop-types": {
       "version": "15.8.1",
       "resolved": "https://registry.npmjs.org/prop-types/-/prop-types-15.8.1.tgz",
@@ -14753,6 +14786,12 @@
         "url": "https://github.com/steveukx/git-js?sponsor=1"
       }
     },
+    "node_modules/sisteransi": {
+      "version": "1.0.5",
+      "resolved": "https://registry.npmjs.org/sisteransi/-/sisteransi-1.0.5.tgz",
+      "integrity": "sha512-bLGGlR1QxBcynn2d5YmDX4MGjlZvy2MRBDRNHLJ8VI6l6+9FUiyTFNJ0IveOSP0bcXgVDPRcfGqA0pjaqUpfVg==",
+      "license": "MIT"
+    },
     "node_modules/slash": {
       "version": "5.1.0",
       "resolved": "https://registry.npmjs.org/slash/-/slash-5.1.0.tgz",
@@ -17338,6 +17377,7 @@
         "ink-spinner": "^5.0.0",
         "lowlight": "^3.3.0",
         "open": "^10.1.2",
+        "prompts": "^2.4.2",
         "qrcode-terminal": "^0.12.0",
         "react": "^19.1.0",
         "read-package-up": "^11.0.0",
@@ -17366,6 +17406,7 @@
         "@types/diff": "^7.0.2",
         "@types/dotenv": "^6.1.1",
         "@types/node": "^20.11.24",
+        "@types/prompts": "^2.4.9",
         "@types/react": "^19.1.8",
         "@types/react-dom": "^19.1.6",
         "@types/semver": "^7.7.0",

packages/cli/package.json

@@ -46,6 +46,7 @@
     "comment-json": "^4.2.5",
     "diff": "^7.0.0",
     "dotenv": "^17.1.0",
+    "prompts": "^2.4.2",
     "fzf": "^0.5.2",
     "glob": "^10.5.0",
     "highlight.js": "^11.11.1",
@@ -79,6 +80,7 @@
     "@types/command-exists": "^1.2.3",
     "@types/diff": "^7.0.2",
     "@types/dotenv": "^6.1.1",
+    "@types/prompts": "^2.4.9",
     "@types/node": "^20.11.24",
     "@types/react": "^19.1.8",
     "@types/react-dom": "^19.1.6",

packages/cli/src/acp-integration/acpAgent.ts

@@ -27,10 +27,8 @@ import { Readable, Writable } from 'node:stream';
 import type { LoadedSettings } from '../config/settings.js';
 import { SettingScope } from '../config/settings.js';
 import { z } from 'zod';
-import { ExtensionStorage, type Extension } from '../config/extension.js';
 import type { CliArgs } from '../config/config.js';
 import { loadCliConfig } from '../config/config.js';
-import { ExtensionEnablementManager } from '../config/extensions/extensionEnablement.js';
 
 // Import the modular Session class
 import { Session } from './session/Session.js';
@@ -38,7 +36,6 @@ import { Session } from './session/Session.js';
 export async function runAcpAgent(
   config: Config,
   settings: LoadedSettings,
-  extensions: Extension[],
   argv: CliArgs,
 ) {
   const stdout = Writable.toWeb(process.stdout) as WritableStream;
@@ -51,8 +48,7 @@ export async function runAcpAgent(
   console.debug = console.error;
 
   new acp.AgentSideConnection(
-    (client: acp.Client) =>
-      new GeminiAgent(config, settings, extensions, argv, client),
+    (client: acp.Client) => new GeminiAgent(config, settings, argv, client),
     stdout,
     stdin,
   );
@@ -65,7 +61,6 @@ class GeminiAgent {
   constructor(
     private config: Config,
     private settings: LoadedSettings,
-    private extensions: Extension[],
     private argv: CliArgs,
     private client: acp.Client,
   ) {}
@@ -215,16 +210,7 @@ class GeminiAgent {
       continue: false,
     };
 
-    const config = await loadCliConfig(
-      settings,
-      this.extensions,
-      new ExtensionEnablementManager(
-        ExtensionStorage.getUserExtensionsDir(),
-        this.argv.extensions,
-      ),
-      argvForSession,
-      cwd,
-    );
+    const config = await loadCliConfig(settings, argvForSession, cwd);
 
     await config.initialize();
     return config;

packages/cli/src/commands/extensions/consent.ts

@@ -0,0 +1,87 @@
+import type { ConfirmationRequest } from '../../ui/types.js';
+
+/**
+ * Requests consent from the user to perform an action, by reading a Y/n
+ * character from stdin.
+ *
+ * This should not be called from interactive mode as it will break the CLI.
+ *
+ * @param consentDescription The description of the thing they will be consenting to.
+ * @returns boolean, whether they consented or not.
+ */
+export async function requestConsentNonInteractive(
+  consentDescription: string,
+): Promise<boolean> {
+  console.info(consentDescription);
+  const result = await promptForConsentNonInteractive(
+    'Do you want to continue? [Y/n]: ',
+  );
+  return result;
+}
+
+/**
+ * Requests consent from the user to perform an action, in interactive mode.
+ *
+ * This should not be called from non-interactive mode as it will not work.
+ *
+ * @param consentDescription The description of the thing they will be consenting to.
+ * @param addExtensionUpdateConfirmationRequest A function to actually add a prompt to the UI.
+ * @returns boolean, whether they consented or not.
+ */
+export async function requestConsentInteractive(
+  consentDescription: string,
+  addExtensionUpdateConfirmationRequest: (value: ConfirmationRequest) => void,
+): Promise<boolean> {
+  return promptForConsentInteractive(
+    consentDescription + '\n\nDo you want to continue?',
+    addExtensionUpdateConfirmationRequest,
+  );
+}
+
+/**
+ * Asks users a prompt and awaits for a y/n response on stdin.
+ *
+ * This should not be called from interactive mode as it will break the CLI.
+ *
+ * @param prompt A yes/no prompt to ask the user
+ * @returns Whether or not the user answers 'y' (yes). Defaults to 'yes' on enter.
+ */
+async function promptForConsentNonInteractive(
+  prompt: string,
+): Promise<boolean> {
+  const readline = await import('node:readline');
+  const rl = readline.createInterface({
+    input: process.stdin,
+    output: process.stdout,
+  });
+
+  return new Promise((resolve) => {
+    rl.question(prompt, (answer) => {
+      rl.close();
+      resolve(['y', ''].includes(answer.trim().toLowerCase()));
+    });
+  });
+}
+
+/**
+ * Asks users an interactive yes/no prompt.
+ *
+ * This should not be called from non-interactive mode as it will break the CLI.
+ *
+ * @param prompt A markdown prompt to ask the user
+ * @param addExtensionUpdateConfirmationRequest Function to update the UI state with the confirmation request.
+ * @returns Whether or not the user answers yes.
+ */
+async function promptForConsentInteractive(
+  prompt: string,
+  addExtensionUpdateConfirmationRequest: (value: ConfirmationRequest) => void,
+): Promise<boolean> {
+  return new Promise<boolean>((resolve) => {
+    addExtensionUpdateConfirmationRequest({
+      prompt,
+      onConfirm: (resolvedConfirmed) => {
+        resolve(resolvedConfirmed);
+      },
+    });
+  });
+}

packages/cli/src/commands/extensions/disable.ts

@@ -5,21 +5,22 @@
  */
 
 import { type CommandModule } from 'yargs';
-import { disableExtension } from '../../config/extension.js';
 import { SettingScope } from '../../config/settings.js';
 import { getErrorMessage } from '../../utils/errors.js';
+import { getExtensionManager } from './utils.js';
 
 interface DisableArgs {
   name: string;
   scope?: string;
 }
 
-export function handleDisable(args: DisableArgs) {
+export async function handleDisable(args: DisableArgs) {
+  const extensionManager = await getExtensionManager();
   try {
     if (args.scope?.toLowerCase() === 'workspace') {
-      disableExtension(args.name, SettingScope.Workspace);
+      extensionManager.disableExtension(args.name, SettingScope.Workspace);
     } else {
-      disableExtension(args.name, SettingScope.User);
+      extensionManager.disableExtension(args.name, SettingScope.User);
     }
     console.log(
       `Extension "${args.name}" successfully disabled for scope "${args.scope}".`,
@@ -61,8 +62,8 @@ export const disableCommand: CommandModule = {
         }
         return true;
       }),
-  handler: (argv) => {
-    handleDisable({
+  handler: async (argv) => {
+    await handleDisable({
       name: argv['name'] as string,
       scope: argv['scope'] as string,
     });

packages/cli/src/commands/extensions/enable.ts

@@ -6,20 +6,22 @@
 
 import { type CommandModule } from 'yargs';
 import { FatalConfigError, getErrorMessage } from '@qwen-code/qwen-code-core';
-import { enableExtension } from '../../config/extension.js';
 import { SettingScope } from '../../config/settings.js';
+import { getExtensionManager } from './utils.js';
 
 interface EnableArgs {
   name: string;
   scope?: string;
 }
 
-export function handleEnable(args: EnableArgs) {
+export async function handleEnable(args: EnableArgs) {
+  const extensionManager = await getExtensionManager();
+
   try {
     if (args.scope?.toLowerCase() === 'workspace') {
-      enableExtension(args.name, SettingScope.Workspace);
+      extensionManager.enableExtension(args.name, SettingScope.Workspace);
     } else {
-      enableExtension(args.name, SettingScope.User);
+      extensionManager.enableExtension(args.name, SettingScope.User);
     }
     if (args.scope) {
       console.log(
@@ -66,8 +68,8 @@ export const enableCommand: CommandModule = {
         }
         return true;
       }),
-  handler: (argv) => {
-    handleEnable({
+  handler: async (argv) => {
+    await handleEnable({
       name: argv['name'] as string,
       scope: argv['scope'] as string,
     });

packages/cli/src/commands/extensions/install.ts

@@ -5,58 +5,64 @@
  */
 
 import type { CommandModule } from 'yargs';
+
 import {
-  installExtension,
-  requestConsentNonInteractive,
-} from '../../config/extension.js';
-import type { ExtensionInstallMetadata } from '@qwen-code/qwen-code-core';
+  ExtensionManager,
+  parseInstallSource,
+} from '@qwen-code/qwen-code-core';
 import { getErrorMessage } from '../../utils/errors.js';
-import { stat } from 'node:fs/promises';
+import { isWorkspaceTrusted } from '../../config/trustedFolders.js';
+import { loadSettings } from '../../config/settings.js';
+import { requestConsentNonInteractive } from './consent.js';
 
 interface InstallArgs {
   source: string;
   ref?: string;
   autoUpdate?: boolean;
+  allowPreRelease?: boolean;
+  consent?: boolean;
 }
 
 export async function handleInstall(args: InstallArgs) {
   try {
-    let installMetadata: ExtensionInstallMetadata;
-    const { source } = args;
+    const installMetadata = await parseInstallSource(args.source);
+
     if (
-      source.startsWith('http://') ||
-      source.startsWith('https://') ||
-      source.startsWith('git@') ||
-      source.startsWith('sso://')
+      installMetadata.type !== 'git' &&
+      installMetadata.type !== 'github-release'
     ) {
-      installMetadata = {
-        source,
-        type: 'git',
-        ref: args.ref,
-        autoUpdate: args.autoUpdate,
-      };
-    } else {
       if (args.ref || args.autoUpdate) {
         throw new Error(
-          '--ref and --auto-update are not applicable for local extensions.',
+          '--ref and --auto-update are not applicable for marketplace extensions.',
         );
       }
-      try {
-        await stat(source);
-        installMetadata = {
-          source,
-          type: 'local',
-        };
-      } catch {
-        throw new Error('Install source not found.');
-      }
     }
 
-    const name = await installExtension(
-      installMetadata,
-      requestConsentNonInteractive,
+    const requestConsent = args.consent
+      ? () => Promise.resolve(true)
+      : requestConsentNonInteractive;
+    const workspaceDir = process.cwd();
+    const extensionManager = new ExtensionManager({
+      workspaceDir,
+      isWorkspaceTrusted: !!isWorkspaceTrusted(
+        loadSettings(workspaceDir).merged,
+      ),
+      requestConsent,
+    });
+    await extensionManager.refreshCache();
+
+    const extension = await extensionManager.installExtension(
+      {
+        ...installMetadata,
+        ref: args.ref,
+        autoUpdate: args.autoUpdate,
+        allowPreRelease: args.allowPreRelease,
+      },
+      requestConsent,
+    );
+    console.log(
+      `Extension "${extension.name}" installed successfully and enabled.`,
     );
-    console.log(`Extension "${name}" installed successfully and enabled.`);
   } catch (error) {
     console.error(getErrorMessage(error));
     process.exit(1);
@@ -65,11 +71,13 @@ export async function handleInstall(args: InstallArgs) {
 
 export const installCommand: CommandModule = {
   command: 'install <source>',
-  describe: 'Installs an extension from a git repository URL or a local path.',
+  describe:
+    'Installs an extension from a git repository URL, local path, or claude marketplace (marketplace-url:plugin-name).',
   builder: (yargs) =>
     yargs
       .positional('source', {
-        describe: 'The github URL or local path of the extension to install.',
+        describe:
+          'The github URL, local path, or marketplace source (marketplace-url:plugin-name) of the extension to install.',
         type: 'string',
         demandOption: true,
       })
@@ -81,6 +89,16 @@ export const installCommand: CommandModule = {
         describe: 'Enable auto-update for this extension.',
         type: 'boolean',
       })
+      .option('pre-release', {
+        describe: 'Enable pre-release versions for this extension.',
+        type: 'boolean',
+      })
+      .option('consent', {
+        describe:
+          'Acknowledge the security risks of installing an extension and skip the confirmation prompt.',
+        type: 'boolean',
+        default: false,
+      })
       .check((argv) => {
         if (!argv.source) {
           throw new Error('The source argument must be provided.');
@@ -92,6 +110,8 @@ export const installCommand: CommandModule = {
       source: argv['source'] as string,
       ref: argv['ref'] as string | undefined,
       autoUpdate: argv['auto-update'] as boolean | undefined,
+      allowPreRelease: argv['pre-release'] as boolean | undefined,
+      consent: argv['consent'] as boolean | undefined,
     });
   },
 };

packages/cli/src/commands/extensions/link.ts

@@ -5,13 +5,10 @@
  */
 
 import type { CommandModule } from 'yargs';
-import {
-  installExtension,
-  requestConsentNonInteractive,
-} from '../../config/extension.js';
-import type { ExtensionInstallMetadata } from '@qwen-code/qwen-code-core';
-
+import { type ExtensionInstallMetadata } from '@qwen-code/qwen-code-core';
 import { getErrorMessage } from '../../utils/errors.js';
+import { requestConsentNonInteractive } from './consent.js';
+import { getExtensionManager } from './utils.js';
 
 interface InstallArgs {
   path: string;
@@ -23,12 +20,14 @@ export async function handleLink(args: InstallArgs) {
       source: args.path,
       type: 'link',
     };
-    const extensionName = await installExtension(
+    const extensionManager = await getExtensionManager();
+
+    const extension = await extensionManager.installExtension(
       installMetadata,
       requestConsentNonInteractive,
     );
     console.log(
-      `Extension "${extensionName}" linked successfully and enabled.`,
+      `Extension "${extension.name}" linked successfully and enabled.`,
     );
   } catch (error) {
     console.error(getErrorMessage(error));

packages/cli/src/commands/extensions/list.ts

@@ -5,19 +5,23 @@
  */
 
 import type { CommandModule } from 'yargs';
-import { loadUserExtensions, toOutputString } from '../../config/extension.js';
 import { getErrorMessage } from '../../utils/errors.js';
+import { getExtensionManager } from './utils.js';
 
 export async function handleList() {
   try {
-    const extensions = loadUserExtensions();
+    const extensionManager = await getExtensionManager();
+    const extensions = extensionManager.getLoadedExtensions();
+
     if (extensions.length === 0) {
       console.log('No extensions installed.');
       return;
     }
     console.log(
       extensions
-        .map((extension, _): string => toOutputString(extension, process.cwd()))
+        .map((extension, _): string =>
+          extensionManager.toOutputString(extension, process.cwd()),
+        )
         .join('\n\n'),
     );
   } catch (error) {

packages/cli/src/commands/extensions/uninstall.ts

@@ -5,8 +5,11 @@
  */
 
 import type { CommandModule } from 'yargs';
-import { uninstallExtension } from '../../config/extension.js';
 import { getErrorMessage } from '../../utils/errors.js';
+import { ExtensionManager } from '@qwen-code/qwen-code-core';
+import { requestConsentNonInteractive } from './consent.js';
+import { isWorkspaceTrusted } from '../../config/trustedFolders.js';
+import { loadSettings } from '../../config/settings.js';
 
 interface UninstallArgs {
   name: string; // can be extension name or source URL.
@@ -14,7 +17,16 @@ interface UninstallArgs {
 
 export async function handleUninstall(args: UninstallArgs) {
   try {
-    await uninstallExtension(args.name);
+    const workspaceDir = process.cwd();
+    const extensionManager = new ExtensionManager({
+      workspaceDir,
+      requestConsent: requestConsentNonInteractive,
+      isWorkspaceTrusted: !!isWorkspaceTrusted(
+        loadSettings(workspaceDir).merged,
+      ),
+    });
+    await extensionManager.refreshCache();
+    await extensionManager.uninstallExtension(args.name, false);
     console.log(`Extension "${args.name}" successfully uninstalled.`);
   } catch (error) {
     console.error(getErrorMessage(error));

packages/cli/src/commands/extensions/update.ts

@@ -5,22 +5,13 @@
  */
 
 import type { CommandModule } from 'yargs';
-import {
-  loadExtensions,
-  annotateActiveExtensions,
-  ExtensionStorage,
-  requestConsentNonInteractive,
-} from '../../config/extension.js';
-import {
-  updateAllUpdatableExtensions,
-  type ExtensionUpdateInfo,
-  checkForAllExtensionUpdates,
-  updateExtension,
-} from '../../config/extensions/update.js';
-import { checkForExtensionUpdate } from '../../config/extensions/github.js';
 import { getErrorMessage } from '../../utils/errors.js';
 import { ExtensionUpdateState } from '../../ui/state/extensions.js';
-import { ExtensionEnablementManager } from '../../config/extensions/extensionEnablement.js';
+import {
+  checkForExtensionUpdate,
+  type ExtensionUpdateInfo,
+} from '@qwen-code/qwen-code-core';
+import { getExtensionManager } from './utils.js';
 
 interface UpdateArgs {
   name?: string;
@@ -31,19 +22,9 @@ const updateOutput = (info: ExtensionUpdateInfo) =>
   `Extension "${info.name}" successfully updated: ${info.originalVersion} → ${info.updatedVersion}.`;
 
 export async function handleUpdate(args: UpdateArgs) {
-  const workingDir = process.cwd();
-  const extensionEnablementManager = new ExtensionEnablementManager(
-    ExtensionStorage.getUserExtensionsDir(),
-    // Force enable named extensions, otherwise we will only update the enabled
-    // ones.
-    args.name ? [args.name] : [],
-  );
-  const allExtensions = loadExtensions(extensionEnablementManager);
-  const extensions = annotateActiveExtensions(
-    allExtensions,
-    workingDir,
-    extensionEnablementManager,
-  );
+  const extensionManager = await getExtensionManager();
+  const extensions = extensionManager.getLoadedExtensions();
+
   if (args.name) {
     try {
       const extension = extensions.find(
@@ -53,25 +34,23 @@ export async function handleUpdate(args: UpdateArgs) {
         console.log(`Extension "${args.name}" not found.`);
         return;
       }
-      let updateState: ExtensionUpdateState | undefined;
       if (!extension.installMetadata) {
         console.log(
           `Unable to install extension "${args.name}" due to missing install metadata`,
         );
         return;
       }
-      await checkForExtensionUpdate(extension, (newState) => {
-        updateState = newState;
-      });
+      const updateState = await checkForExtensionUpdate(
+        extension,
+        extensionManager,
+      );
       if (updateState !== ExtensionUpdateState.UPDATE_AVAILABLE) {
         console.log(`Extension "${args.name}" is already up to date.`);
         return;
       }
       // TODO(chrstnb): we should list extensions if the requested extension is not installed.
-      const updatedExtensionInfo = (await updateExtension(
+      const updatedExtensionInfo = (await extensionManager.updateExtension(
         extension,
-        workingDir,
-        requestConsentNonInteractive,
         updateState,
         () => {},
       ))!;
@@ -92,18 +71,15 @@ export async function handleUpdate(args: UpdateArgs) {
   if (args.all) {
     try {
       const extensionState = new Map();
-      await checkForAllExtensionUpdates(extensions, (action) => {
-        if (action.type === 'SET_STATE') {
-          extensionState.set(action.payload.name, {
-            status: action.payload.state,
+      await extensionManager.checkForAllExtensionUpdates(
+        (extensionName, state) => {
+          extensionState.set(extensionName, {
+            status: state,
             processed: true, // No need to process as we will force the update.
           });
-        }
-      });
-      let updateInfos = await updateAllUpdatableExtensions(
-        workingDir,
-        requestConsentNonInteractive,
-        extensions,
+        },
+      );
+      let updateInfos = await extensionManager.updateAllUpdatableExtensions(
         extensionState,
         () => {},
       );

packages/cli/src/commands/extensions/utils.ts

@@ -0,0 +1,21 @@
+/**
+ * @license
+ * Copyright 2025 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+import { ExtensionManager } from '@qwen-code/qwen-code-core';
+import { loadSettings } from '../../config/settings.js';
+import { requestConsentNonInteractive } from './consent.js';
+import { isWorkspaceTrusted } from '../../config/trustedFolders.js';
+
+export async function getExtensionManager(): Promise<ExtensionManager> {
+  const workspaceDir = process.cwd();
+  const extensionManager = new ExtensionManager({
+    workspaceDir,
+    requestConsent: requestConsentNonInteractive,
+    isWorkspaceTrusted: !!isWorkspaceTrusted(loadSettings(workspaceDir).merged),
+  });
+  await extensionManager.refreshCache();
+  return extensionManager;
+}

packages/cli/src/commands/mcp/list.test.ts

@@ -7,7 +7,8 @@
 import { vi, describe, it, expect, beforeEach, afterEach } from 'vitest';
 import { listMcpServers } from './list.js';
 import { loadSettings } from '../../config/settings.js';
-import { ExtensionStorage, loadExtensions } from '../../config/extension.js';
+import { loadExtensions } from '../../config/extension.js';
+import { ExtensionStorage } from '../../config/extensions/storage.js';
 import { createTransport } from '@qwen-code/qwen-code-core';
 import { Client } from '@modelcontextprotocol/sdk/client/index.js';
 

packages/cli/src/commands/mcp/list.ts

@@ -8,10 +8,13 @@
 import type { CommandModule } from 'yargs';
 import { loadSettings } from '../../config/settings.js';
 import type { MCPServerConfig } from '@qwen-code/qwen-code-core';
-import { MCPServerStatus, createTransport } from '@qwen-code/qwen-code-core';
+import {
+  MCPServerStatus,
+  createTransport,
+  ExtensionManager,
+} from '@qwen-code/qwen-code-core';
 import { Client } from '@modelcontextprotocol/sdk/client/index.js';
-import { ExtensionStorage, loadExtensions } from '../../config/extension.js';
-import { ExtensionEnablementManager } from '../../config/extensions/extensionEnablement.js';
+import { isWorkspaceTrusted } from '../../config/trustedFolders.js';
 
 const COLOR_GREEN = '\u001b[32m';
 const COLOR_YELLOW = '\u001b[33m';
@@ -22,22 +25,27 @@ async function getMcpServersFromConfig(): Promise<
   Record<string, MCPServerConfig>
 > {
   const settings = loadSettings();
-  const extensions = loadExtensions(
-    new ExtensionEnablementManager(ExtensionStorage.getUserExtensionsDir()),
-  );
+  const extensionManager = new ExtensionManager({
+    isWorkspaceTrusted: !!isWorkspaceTrusted(settings.merged),
+    telemetrySettings: settings.merged.telemetry,
+  });
+  await extensionManager.refreshCache();
+  const extensions = extensionManager.getLoadedExtensions();
   const mcpServers = { ...(settings.merged.mcpServers || {}) };
   for (const extension of extensions) {
-    Object.entries(extension.config.mcpServers || {}).forEach(
-      ([key, server]) => {
-        if (mcpServers[key]) {
-          return;
-        }
-        mcpServers[key] = {
-          ...server,
-          extensionName: extension.config.name,
-        };
-      },
-    );
+    if (extension.isActive) {
+      Object.entries(extension.config.mcpServers || {}).forEach(
+        ([key, server]) => {
+          if (mcpServers[key]) {
+            return;
+          }
+          mcpServers[key] = {
+            ...server,
+            extensionName: extension.config.name,
+          };
+        },
+      );
+    }
   }
   return mcpServers;
 }

packages/cli/src/config/config.test.ts

@@ -16,7 +16,8 @@ import {
 } from '@qwen-code/qwen-code-core';
 import { loadCliConfig, parseArguments, type CliArgs } from './config.js';
 import type { Settings } from './settings.js';
-import { ExtensionStorage, type Extension } from './extension.js';
+import type { Extension } from './extension.js';
+import { ExtensionStorage } from './extensions/storage.js';
 import * as ServerConfig from '@qwen-code/qwen-code-core';
 import { isWorkspaceTrusted } from './trustedFolders.js';
 import { ExtensionEnablementManager } from './extensions/extensionEnablement.js';

packages/cli/src/config/config.ts

@@ -9,7 +9,6 @@ import {
   AuthType,
   Config,
   DEFAULT_QWEN_EMBEDDING_MODEL,
-  DEFAULT_MEMORY_FILE_FILTERING_OPTIONS,
   EditTool,
   FileDiscoveryService,
   getCurrentGeminiMdFilename,
@@ -25,7 +24,6 @@ import {
   SessionService,
   type ResumedSessionData,
   type FileFilteringOptions,
-  type MCPServerConfig,
 } from '@qwen-code/qwen-code-core';
 import { extensionsCommand } from '../commands/extensions.js';
 import type { Settings } from './settings.js';
@@ -37,14 +35,11 @@ import { homedir } from 'node:os';
 
 import { resolvePath } from '../utils/resolvePath.js';
 import { getCliVersion } from '../utils/version.js';
-import type { Extension } from './extension.js';
-import { annotateActiveExtensions } from './extension.js';
 import { loadSandboxConfig } from './sandboxConfig.js';
 import { appEvents } from '../utils/events.js';
 import { mcpCommand } from '../commands/mcp.js';
 
 import { isWorkspaceTrusted } from './trustedFolders.js';
-import type { ExtensionEnablementManager } from './extensions/extensionEnablement.js';
 import { buildWebSearchConfig } from './webSearch.js';
 
 // Simple console logger for now - replace with actual logger if available
@@ -162,7 +157,7 @@ function normalizeOutputFormat(
   return OutputFormat.TEXT;
 }
 
-export async function parseArguments(settings: Settings): Promise<CliArgs> {
+export async function parseArguments(): Promise<CliArgs> {
   const rawArgv = hideBin(process.argv);
   const yargsInstance = yargs(rawArgv)
     .locale('en')
@@ -537,11 +532,9 @@ export async function parseArguments(settings: Settings): Promise<CliArgs> {
         }),
     )
     // Register MCP subcommands
-    .command(mcpCommand);
-
-  if (settings?.experimental?.extensionManagement ?? true) {
-    yargsInstance.command(extensionsCommand);
-  }
+    .command(mcpCommand)
+    // Register Extension subcommands
+    .command(extensionsCommand);
 
   yargsInstance
     .version(await getCliVersion()) // This will enable the --version flag based on package.json
@@ -605,11 +598,11 @@ export async function loadHierarchicalGeminiMemory(
   includeDirectoriesToReadGemini: readonly string[] = [],
   debugMode: boolean,
   fileService: FileDiscoveryService,
-  settings: Settings,
   extensionContextFilePaths: string[] = [],
   folderTrust: boolean,
   memoryImportFormat: 'flat' | 'tree' = 'tree',
   fileFilteringOptions?: FileFilteringOptions,
+  maxDirs: number = 200,
 ): Promise<{ memoryContent: string; fileCount: number }> {
   // FIX: Use real, canonical paths for a reliable comparison to handle symlinks.
   const realCwd = fs.realpathSync(path.resolve(currentWorkingDirectory));
@@ -636,7 +629,7 @@ export async function loadHierarchicalGeminiMemory(
     folderTrust,
     memoryImportFormat,
     fileFilteringOptions,
-    settings.context?.discoveryMaxDirs,
+    maxDirs,
   );
 }
 
@@ -651,30 +644,17 @@ export function isDebugMode(argv: CliArgs): boolean {
 
 export async function loadCliConfig(
   settings: Settings,
-  extensions: Extension[],
-  extensionEnablementManager: ExtensionEnablementManager,
   argv: CliArgs,
   cwd: string = process.cwd(),
+  overrideExtensions?: string[],
 ): Promise<Config> {
   const debugMode = isDebugMode(argv);
 
-  const memoryImportFormat = settings.context?.importFormat || 'tree';
-
   const ideMode = settings.ide?.enabled ?? false;
 
   const folderTrust = settings.security?.folderTrust?.enabled ?? false;
   const trustedFolder = isWorkspaceTrusted(settings)?.isTrusted ?? true;
 
-  const allExtensions = annotateActiveExtensions(
-    extensions,
-    cwd,
-    extensionEnablementManager,
-  );
-
-  const activeExtensions = extensions.filter(
-    (_, i) => allExtensions[i].isActive,
-  );
-
   // Set the context filename in the server's memoryTool module BEFORE loading memory
   // TODO(b/343434939): This is a bit of a hack. The contextFileName should ideally be passed
   // directly to the Config constructor in core, and have core handle setGeminiMdFilename.
@@ -686,51 +666,27 @@ export async function loadCliConfig(
     setServerGeminiMdFilename(getCurrentGeminiMdFilename());
   }
 
-  const extensionContextFilePaths = activeExtensions.flatMap(
-    (e) => e.contextFiles,
-  );
-
   // Automatically load output-language.md if it exists
-  const outputLanguageFilePath = path.join(
+  let outputLanguageFilePath: string | undefined = path.join(
     Storage.getGlobalQwenDir(),
     'output-language.md',
   );
   if (fs.existsSync(outputLanguageFilePath)) {
-    extensionContextFilePaths.push(outputLanguageFilePath);
     if (debugMode) {
       logger.debug(
         `Found output-language.md, adding to context files: ${outputLanguageFilePath}`,
       );
     }
+  } else {
+    outputLanguageFilePath = undefined;
   }
 
   const fileService = new FileDiscoveryService(cwd);
 
-  const fileFiltering = {
-    ...DEFAULT_MEMORY_FILE_FILTERING_OPTIONS,
-    ...settings.context?.fileFiltering,
-  };
-
   const includeDirectories = (settings.context?.includeDirectories || [])
     .map(resolvePath)
     .concat((argv.includeDirectories || []).map(resolvePath));
 
-  // Call the (now wrapper) loadHierarchicalGeminiMemory which calls the server's version
-  const { memoryContent, fileCount } = await loadHierarchicalGeminiMemory(
-    cwd,
-    settings.context?.loadMemoryFromIncludeDirectories
-      ? includeDirectories
-      : [],
-    debugMode,
-    fileService,
-    settings,
-    extensionContextFilePaths,
-    trustedFolder,
-    memoryImportFormat,
-    fileFiltering,
-  );
-
-  let mcpServers = mergeMcpServers(settings, activeExtensions);
   const question = argv.promptInteractive || argv.prompt || '';
   const inputFormat: InputFormat =
     (argv.inputFormat as InputFormat | undefined) ?? InputFormat.TEXT;
@@ -844,38 +800,18 @@ export async function loadCliConfig(
 
   const excludeTools = mergeExcludeTools(
     settings,
-    activeExtensions,
     extraExcludes.length > 0 ? extraExcludes : undefined,
     argv.excludeTools,
   );
-  const blockedMcpServers: Array<{ name: string; extensionName: string }> = [];
 
-  if (!argv.allowedMcpServerNames) {
-    if (settings.mcp?.allowed) {
-      mcpServers = allowedMcpServers(
-        mcpServers,
-        settings.mcp.allowed,
-        blockedMcpServers,
-      );
-    }
-
-    if (settings.mcp?.excluded) {
-      const excludedNames = new Set(settings.mcp.excluded.filter(Boolean));
-      if (excludedNames.size > 0) {
-        mcpServers = Object.fromEntries(
-          Object.entries(mcpServers).filter(([key]) => !excludedNames.has(key)),
-        );
-      }
-    }
-  }
-
-  if (argv.allowedMcpServerNames) {
-    mcpServers = allowedMcpServers(
-      mcpServers,
-      argv.allowedMcpServerNames,
-      blockedMcpServers,
-    );
-  }
+  const allowedMcpServers = argv.allowedMcpServerNames
+    ? new Set(argv.allowedMcpServerNames.filter(Boolean))
+    : settings.mcp?.allowed
+      ? new Set(settings.mcp.allowed.filter(Boolean))
+      : undefined;
+  const excludedMcpServers = settings.mcp?.excluded
+    ? new Set(settings.mcp.excluded.filter(Boolean))
+    : undefined;
 
   const selectedAuthType =
     (argv.authType as AuthType | undefined) ||
@@ -943,6 +879,8 @@ export async function loadCliConfig(
     includeDirectories,
     loadMemoryFromIncludeDirectories:
       settings.context?.loadMemoryFromIncludeDirectories || false,
+    importFormat: settings.context?.importFormat || 'tree',
+    discoveryMaxDirs: settings.context?.discoveryMaxDirs || 200,
     debugMode,
     question,
     fullContext: argv.allFiles || false,
@@ -952,9 +890,13 @@ export async function loadCliConfig(
     toolDiscoveryCommand: settings.tools?.discoveryCommand,
     toolCallCommand: settings.tools?.callCommand,
     mcpServerCommand: settings.mcp?.serverCommand,
-    mcpServers,
-    userMemory: memoryContent,
-    geminiMdFileCount: fileCount,
+    mcpServers: settings.mcpServers || {},
+    allowedMcpServers: allowedMcpServers
+      ? Array.from(allowedMcpServers)
+      : undefined,
+    excludedMcpServers: excludedMcpServers
+      ? Array.from(excludedMcpServers)
+      : undefined,
     approvalMode,
     showMemoryUsage:
       argv.showMemoryUsage || settings.ui?.showMemoryUsage || false,
@@ -977,15 +919,14 @@ export async function loadCliConfig(
     fileDiscoveryService: fileService,
     bugCommand: settings.advanced?.bugCommand,
     model: resolvedModel,
-    extensionContextFilePaths,
+    outputLanguageFilePath,
     sessionTokenLimit: settings.model?.sessionTokenLimit ?? -1,
     maxSessionTurns:
       argv.maxSessionTurns ?? settings.model?.maxSessionTurns ?? -1,
     experimentalZedIntegration: argv.experimentalAcp || false,
     experimentalSkills: argv.experimentalSkills || false,
     listExtensions: argv.listExtensions || false,
-    extensions: allExtensions,
-    blockedMcpServers,
+    overrideExtensions: overrideExtensions || argv.extensions,
     noBrowser: !!process.env['NO_BROWSER'],
     authType: selectedAuthType,
     inputFormat,
@@ -1040,61 +981,8 @@ export async function loadCliConfig(
   });
 }
 
-function allowedMcpServers(
-  mcpServers: { [x: string]: MCPServerConfig },
-  allowMCPServers: string[],
-  blockedMcpServers: Array<{ name: string; extensionName: string }>,
-) {
-  const allowedNames = new Set(allowMCPServers.filter(Boolean));
-  if (allowedNames.size > 0) {
-    mcpServers = Object.fromEntries(
-      Object.entries(mcpServers).filter(([key, server]) => {
-        const isAllowed = allowedNames.has(key);
-        if (!isAllowed) {
-          blockedMcpServers.push({
-            name: key,
-            extensionName: server.extensionName || '',
-          });
-        }
-        return isAllowed;
-      }),
-    );
-  } else {
-    blockedMcpServers.push(
-      ...Object.entries(mcpServers).map(([key, server]) => ({
-        name: key,
-        extensionName: server.extensionName || '',
-      })),
-    );
-    mcpServers = {};
-  }
-  return mcpServers;
-}
-
-function mergeMcpServers(settings: Settings, extensions: Extension[]) {
-  const mcpServers = { ...(settings.mcpServers || {}) };
-  for (const extension of extensions) {
-    Object.entries(extension.config.mcpServers || {}).forEach(
-      ([key, server]) => {
-        if (mcpServers[key]) {
-          logger.warn(
-            `Skipping extension MCP config for server with key "${key}" as it already exists.`,
-          );
-          return;
-        }
-        mcpServers[key] = {
-          ...server,
-          extensionName: extension.config.name,
-        };
-      },
-    );
-  }
-  return mcpServers;
-}
-
 function mergeExcludeTools(
   settings: Settings,
-  extensions: Extension[],
   extraExcludes?: string[] | undefined,
   cliExcludeTools?: string[] | undefined,
 ): string[] {
@@ -1103,10 +991,5 @@ function mergeExcludeTools(
     ...(settings.tools?.exclude || []),
     ...(extraExcludes || []),
   ]);
-  for (const extension of extensions) {
-    for (const tool of extension.config.excludeTools || []) {
-      allExcludeTools.add(tool);
-    }
-  }
   return [...allExcludeTools];
 }

packages/cli/src/config/extension.ts

@@ -1,786 +0,0 @@
-/**
- * @license
- * Copyright 2025 Google LLC
- * SPDX-License-Identifier: Apache-2.0
- */
-
-import type {
-  MCPServerConfig,
-  GeminiCLIExtension,
-  ExtensionInstallMetadata,
-} from '@qwen-code/qwen-code-core';
-import {
-  QWEN_DIR,
-  Storage,
-  Config,
-  ExtensionInstallEvent,
-  ExtensionUninstallEvent,
-  ExtensionDisableEvent,
-  ExtensionEnableEvent,
-  logExtensionEnable,
-  logExtensionInstallEvent,
-  logExtensionUninstall,
-  logExtensionDisable,
-} from '@qwen-code/qwen-code-core';
-import * as fs from 'node:fs';
-import * as path from 'node:path';
-import * as os from 'node:os';
-import { SettingScope, loadSettings } from '../config/settings.js';
-import { getErrorMessage } from '../utils/errors.js';
-import { recursivelyHydrateStrings } from './extensions/variables.js';
-import { isWorkspaceTrusted } from './trustedFolders.js';
-import { resolveEnvVarsInObject } from '../utils/envVarResolver.js';
-import {
-  cloneFromGit,
-  downloadFromGitHubRelease,
-} from './extensions/github.js';
-import type { LoadExtensionContext } from './extensions/variableSchema.js';
-import { ExtensionEnablementManager } from './extensions/extensionEnablement.js';
-import chalk from 'chalk';
-import type { ConfirmationRequest } from '../ui/types.js';
-
-export const EXTENSIONS_DIRECTORY_NAME = path.join(QWEN_DIR, 'extensions');
-
-export const EXTENSIONS_CONFIG_FILENAME = 'qwen-extension.json';
-export const INSTALL_METADATA_FILENAME = '.qwen-extension-install.json';
-
-export interface Extension {
-  path: string;
-  config: ExtensionConfig;
-  contextFiles: string[];
-  installMetadata?: ExtensionInstallMetadata | undefined;
-}
-
-export interface ExtensionConfig {
-  name: string;
-  version: string;
-  mcpServers?: Record<string, MCPServerConfig>;
-  contextFileName?: string | string[];
-  excludeTools?: string[];
-}
-
-export interface ExtensionUpdateInfo {
-  name: string;
-  originalVersion: string;
-  updatedVersion: string;
-}
-
-export class ExtensionStorage {
-  private readonly extensionName: string;
-
-  constructor(extensionName: string) {
-    this.extensionName = extensionName;
-  }
-
-  getExtensionDir(): string {
-    return path.join(
-      ExtensionStorage.getUserExtensionsDir(),
-      this.extensionName,
-    );
-  }
-
-  getConfigPath(): string {
-    return path.join(this.getExtensionDir(), EXTENSIONS_CONFIG_FILENAME);
-  }
-
-  static getUserExtensionsDir(): string {
-    const storage = new Storage(os.homedir());
-    return storage.getExtensionsDir();
-  }
-
-  static async createTmpDir(): Promise<string> {
-    return await fs.promises.mkdtemp(path.join(os.tmpdir(), 'qwen-extension'));
-  }
-}
-
-export function getWorkspaceExtensions(workspaceDir: string): Extension[] {
-  // If the workspace dir is the user extensions dir, there are no workspace extensions.
-  if (path.resolve(workspaceDir) === path.resolve(os.homedir())) {
-    return [];
-  }
-  return loadExtensionsFromDir(workspaceDir);
-}
-
-export async function copyExtension(
-  source: string,
-  destination: string,
-): Promise<void> {
-  await fs.promises.cp(source, destination, { recursive: true });
-}
-
-export async function performWorkspaceExtensionMigration(
-  extensions: Extension[],
-  requestConsent: (consent: string) => Promise<boolean>,
-): Promise<string[]> {
-  const failedInstallNames: string[] = [];
-
-  for (const extension of extensions) {
-    try {
-      const installMetadata: ExtensionInstallMetadata = {
-        source: extension.path,
-        type: 'local',
-      };
-      await installExtension(installMetadata, requestConsent);
-    } catch (_) {
-      failedInstallNames.push(extension.config.name);
-    }
-  }
-  return failedInstallNames;
-}
-
-function getTelemetryConfig(cwd: string) {
-  const settings = loadSettings(cwd);
-  const config = new Config({
-    telemetry: settings.merged.telemetry,
-    interactive: false,
-    targetDir: cwd,
-    cwd,
-    model: '',
-    debugMode: false,
-  });
-  return config;
-}
-
-export function loadExtensions(
-  extensionEnablementManager: ExtensionEnablementManager,
-  workspaceDir: string = process.cwd(),
-): Extension[] {
-  const settings = loadSettings(workspaceDir).merged;
-  const allExtensions = [...loadUserExtensions()];
-
-  if (
-    (isWorkspaceTrusted(settings) ?? true) &&
-    // Default management setting to true
-    !(settings.experimental?.extensionManagement ?? true)
-  ) {
-    allExtensions.push(...getWorkspaceExtensions(workspaceDir));
-  }
-
-  const uniqueExtensions = new Map<string, Extension>();
-
-  for (const extension of allExtensions) {
-    if (
-      !uniqueExtensions.has(extension.config.name) &&
-      extensionEnablementManager.isEnabled(extension.config.name, workspaceDir)
-    ) {
-      uniqueExtensions.set(extension.config.name, extension);
-    }
-  }
-
-  return Array.from(uniqueExtensions.values());
-}
-
-export function loadUserExtensions(): Extension[] {
-  const userExtensions = loadExtensionsFromDir(os.homedir());
-
-  const uniqueExtensions = new Map<string, Extension>();
-  for (const extension of userExtensions) {
-    if (!uniqueExtensions.has(extension.config.name)) {
-      uniqueExtensions.set(extension.config.name, extension);
-    }
-  }
-
-  return Array.from(uniqueExtensions.values());
-}
-
-export function loadExtensionsFromDir(dir: string): Extension[] {
-  const storage = new Storage(dir);
-  const extensionsDir = storage.getExtensionsDir();
-  if (!fs.existsSync(extensionsDir)) {
-    return [];
-  }
-
-  const extensions: Extension[] = [];
-  for (const subdir of fs.readdirSync(extensionsDir)) {
-    const extensionDir = path.join(extensionsDir, subdir);
-
-    const extension = loadExtension({ extensionDir, workspaceDir: dir });
-    if (extension != null) {
-      extensions.push(extension);
-    }
-  }
-  return extensions;
-}
-
-export function loadExtension(context: LoadExtensionContext): Extension | null {
-  const { extensionDir, workspaceDir } = context;
-  if (!fs.statSync(extensionDir).isDirectory()) {
-    return null;
-  }
-
-  const installMetadata = loadInstallMetadata(extensionDir);
-  let effectiveExtensionPath = extensionDir;
-
-  if (installMetadata?.type === 'link') {
-    effectiveExtensionPath = installMetadata.source;
-  }
-
-  try {
-    let config = loadExtensionConfig({
-      extensionDir: effectiveExtensionPath,
-      workspaceDir,
-    });
-
-    config = resolveEnvVarsInObject(config);
-
-    if (config.mcpServers) {
-      config.mcpServers = Object.fromEntries(
-        Object.entries(config.mcpServers).map(([key, value]) => [
-          key,
-          filterMcpConfig(value),
-        ]),
-      );
-    }
-
-    const contextFiles = getContextFileNames(config)
-      .map((contextFileName) =>
-        path.join(effectiveExtensionPath, contextFileName),
-      )
-      .filter((contextFilePath) => fs.existsSync(contextFilePath));
-
-    return {
-      path: effectiveExtensionPath,
-      config,
-      contextFiles,
-      installMetadata,
-    };
-  } catch (e) {
-    console.error(
-      `Warning: Skipping extension in ${effectiveExtensionPath}: ${getErrorMessage(
-        e,
-      )}`,
-    );
-    return null;
-  }
-}
-
-export function loadExtensionByName(
-  name: string,
-  workspaceDir: string = process.cwd(),
-): Extension | null {
-  const userExtensionsDir = ExtensionStorage.getUserExtensionsDir();
-  if (!fs.existsSync(userExtensionsDir)) {
-    return null;
-  }
-
-  for (const subdir of fs.readdirSync(userExtensionsDir)) {
-    const extensionDir = path.join(userExtensionsDir, subdir);
-    if (!fs.statSync(extensionDir).isDirectory()) {
-      continue;
-    }
-    const extension = loadExtension({ extensionDir, workspaceDir });
-    if (
-      extension &&
-      extension.config.name.toLowerCase() === name.toLowerCase()
-    ) {
-      return extension;
-    }
-  }
-
-  return null;
-}
-
-function filterMcpConfig(original: MCPServerConfig): MCPServerConfig {
-  // eslint-disable-next-line @typescript-eslint/no-unused-vars
-  const { trust, ...rest } = original;
-  return Object.freeze(rest);
-}
-
-export function loadInstallMetadata(
-  extensionDir: string,
-): ExtensionInstallMetadata | undefined {
-  const metadataFilePath = path.join(extensionDir, INSTALL_METADATA_FILENAME);
-  try {
-    const configContent = fs.readFileSync(metadataFilePath, 'utf-8');
-    const metadata = JSON.parse(configContent) as ExtensionInstallMetadata;
-    return metadata;
-  } catch (_e) {
-    return undefined;
-  }
-}
-
-function getContextFileNames(config: ExtensionConfig): string[] {
-  if (!config.contextFileName) {
-    return ['QWEN.md'];
-  } else if (!Array.isArray(config.contextFileName)) {
-    return [config.contextFileName];
-  }
-  return config.contextFileName;
-}
-
-/**
- * Returns an annotated list of extensions. If an extension is listed in enabledExtensionNames, it will be active.
- * If enabledExtensionNames is empty, an extension is active unless it is disabled.
- * @param extensions The base list of extensions.
- * @param enabledExtensionNames The names of explicitly enabled extensions.
- * @param workspaceDir The current workspace directory.
- */
-export function annotateActiveExtensions(
-  extensions: Extension[],
-  workspaceDir: string,
-  manager: ExtensionEnablementManager,
-): GeminiCLIExtension[] {
-  manager.validateExtensionOverrides(extensions);
-  return extensions.map((extension) => ({
-    name: extension.config.name,
-    version: extension.config.version,
-    isActive: manager.isEnabled(extension.config.name, workspaceDir),
-    path: extension.path,
-    installMetadata: extension.installMetadata,
-  }));
-}
-
-/**
- * Requests consent from the user to perform an action, by reading a Y/n
- * character from stdin.
- *
- * This should not be called from interactive mode as it will break the CLI.
- *
- * @param consentDescription The description of the thing they will be consenting to.
- * @returns boolean, whether they consented or not.
- */
-export async function requestConsentNonInteractive(
-  consentDescription: string,
-): Promise<boolean> {
-  console.info(consentDescription);
-  const result = await promptForConsentNonInteractive(
-    'Do you want to continue? [Y/n]: ',
-  );
-  return result;
-}
-
-/**
- * Requests consent from the user to perform an action, in interactive mode.
- *
- * This should not be called from non-interactive mode as it will not work.
- *
- * @param consentDescription The description of the thing they will be consenting to.
- * @param setExtensionUpdateConfirmationRequest A function to actually add a prompt to the UI.
- * @returns boolean, whether they consented or not.
- */
-export async function requestConsentInteractive(
-  consentDescription: string,
-  addExtensionUpdateConfirmationRequest: (value: ConfirmationRequest) => void,
-): Promise<boolean> {
-  return await promptForConsentInteractive(
-    consentDescription + '\n\nDo you want to continue?',
-    addExtensionUpdateConfirmationRequest,
-  );
-}
-
-/**
- * Asks users a prompt and awaits for a y/n response on stdin.
- *
- * This should not be called from interactive mode as it will break the CLI.
- *
- * @param prompt A yes/no prompt to ask the user
- * @returns Whether or not the user answers 'y' (yes). Defaults to 'yes' on enter.
- */
-async function promptForConsentNonInteractive(
-  prompt: string,
-): Promise<boolean> {
-  const readline = await import('node:readline');
-  const rl = readline.createInterface({
-    input: process.stdin,
-    output: process.stdout,
-  });
-
-  return new Promise((resolve) => {
-    rl.question(prompt, (answer) => {
-      rl.close();
-      resolve(['y', ''].includes(answer.trim().toLowerCase()));
-    });
-  });
-}
-
-/**
- * Asks users an interactive yes/no prompt.
- *
- * This should not be called from non-interactive mode as it will break the CLI.
- *
- * @param prompt A markdown prompt to ask the user
- * @param setExtensionUpdateConfirmationRequest Function to update the UI state with the confirmation request.
- * @returns Whether or not the user answers yes.
- */
-async function promptForConsentInteractive(
-  prompt: string,
-  addExtensionUpdateConfirmationRequest: (value: ConfirmationRequest) => void,
-): Promise<boolean> {
-  return await new Promise<boolean>((resolve) => {
-    addExtensionUpdateConfirmationRequest({
-      prompt,
-      onConfirm: (resolvedConfirmed) => {
-        resolve(resolvedConfirmed);
-      },
-    });
-  });
-}
-
-export async function installExtension(
-  installMetadata: ExtensionInstallMetadata,
-  requestConsent: (consent: string) => Promise<boolean>,
-  cwd: string = process.cwd(),
-  previousExtensionConfig?: ExtensionConfig,
-): Promise<string> {
-  const telemetryConfig = getTelemetryConfig(cwd);
-  let newExtensionConfig: ExtensionConfig | null = null;
-  let localSourcePath: string | undefined;
-
-  try {
-    const settings = loadSettings(cwd).merged;
-    if (!isWorkspaceTrusted(settings)) {
-      throw new Error(
-        `Could not install extension from untrusted folder at ${installMetadata.source}`,
-      );
-    }
-
-    const extensionsDir = ExtensionStorage.getUserExtensionsDir();
-    await fs.promises.mkdir(extensionsDir, { recursive: true });
-
-    if (
-      !path.isAbsolute(installMetadata.source) &&
-      (installMetadata.type === 'local' || installMetadata.type === 'link')
-    ) {
-      installMetadata.source = path.resolve(cwd, installMetadata.source);
-    }
-
-    let tempDir: string | undefined;
-
-    if (
-      installMetadata.type === 'git' ||
-      installMetadata.type === 'github-release'
-    ) {
-      tempDir = await ExtensionStorage.createTmpDir();
-      try {
-        const result = await downloadFromGitHubRelease(
-          installMetadata,
-          tempDir,
-        );
-        installMetadata.type = result.type;
-        installMetadata.releaseTag = result.tagName;
-      } catch (_error) {
-        await cloneFromGit(installMetadata, tempDir);
-        installMetadata.type = 'git';
-      }
-      localSourcePath = tempDir;
-    } else if (
-      installMetadata.type === 'local' ||
-      installMetadata.type === 'link'
-    ) {
-      localSourcePath = installMetadata.source;
-    } else {
-      throw new Error(`Unsupported install type: ${installMetadata.type}`);
-    }
-
-    try {
-      newExtensionConfig = loadExtensionConfig({
-        extensionDir: localSourcePath,
-        workspaceDir: cwd,
-      });
-
-      const newExtensionName = newExtensionConfig.name;
-      const extensionStorage = new ExtensionStorage(newExtensionName);
-      const destinationPath = extensionStorage.getExtensionDir();
-
-      const installedExtensions = loadUserExtensions();
-      if (
-        installedExtensions.some(
-          (installed) => installed.config.name === newExtensionName,
-        )
-      ) {
-        throw new Error(
-          `Extension "${newExtensionName}" is already installed. Please uninstall it first.`,
-        );
-      }
-      await maybeRequestConsentOrFail(
-        newExtensionConfig,
-        requestConsent,
-        previousExtensionConfig,
-      );
-      await fs.promises.mkdir(destinationPath, { recursive: true });
-
-      if (
-        installMetadata.type === 'local' ||
-        installMetadata.type === 'git' ||
-        installMetadata.type === 'github-release'
-      ) {
-        await copyExtension(localSourcePath, destinationPath);
-      }
-
-      const metadataString = JSON.stringify(installMetadata, null, 2);
-      const metadataPath = path.join(
-        destinationPath,
-        INSTALL_METADATA_FILENAME,
-      );
-      await fs.promises.writeFile(metadataPath, metadataString);
-    } finally {
-      if (tempDir) {
-        await fs.promises.rm(tempDir, { recursive: true, force: true });
-      }
-    }
-
-    logExtensionInstallEvent(
-      telemetryConfig,
-      new ExtensionInstallEvent(
-        newExtensionConfig!.name,
-        newExtensionConfig!.version,
-        installMetadata.source,
-        'success',
-      ),
-    );
-
-    enableExtension(newExtensionConfig!.name, SettingScope.User);
-    return newExtensionConfig!.name;
-  } catch (error) {
-    // Attempt to load config from the source path even if installation fails
-    // to get the name and version for logging.
-    if (!newExtensionConfig && localSourcePath) {
-      try {
-        newExtensionConfig = loadExtensionConfig({
-          extensionDir: localSourcePath,
-          workspaceDir: cwd,
-        });
-      } catch {
-        // Ignore error, this is just for logging.
-      }
-    }
-    logExtensionInstallEvent(
-      telemetryConfig,
-      new ExtensionInstallEvent(
-        newExtensionConfig?.name ?? '',
-        newExtensionConfig?.version ?? '',
-        installMetadata.source,
-        'error',
-      ),
-    );
-    throw error;
-  }
-}
-
-/**
- * Builds a consent string for installing an extension based on it's
- * extensionConfig.
- */
-function extensionConsentString(extensionConfig: ExtensionConfig): string {
-  const output: string[] = [];
-  const mcpServerEntries = Object.entries(extensionConfig.mcpServers || {});
-  output.push(`Installing extension "${extensionConfig.name}".`);
-  output.push(
-    '**Extensions may introduce unexpected behavior. Ensure you have investigated the extension source and trust the author.**',
-  );
-
-  if (mcpServerEntries.length) {
-    output.push('This extension will run the following MCP servers:');
-    for (const [key, mcpServer] of mcpServerEntries) {
-      const isLocal = !!mcpServer.command;
-      const source =
-        mcpServer.httpUrl ??
-        `${mcpServer.command || ''}${mcpServer.args ? ' ' + mcpServer.args.join(' ') : ''}`;
-      output.push(`  * ${key} (${isLocal ? 'local' : 'remote'}): ${source}`);
-    }
-  }
-  if (extensionConfig.contextFileName) {
-    output.push(
-      `This extension will append info to your QWEN.md context using ${extensionConfig.contextFileName}`,
-    );
-  }
-  if (extensionConfig.excludeTools) {
-    output.push(
-      `This extension will exclude the following core tools: ${extensionConfig.excludeTools}`,
-    );
-  }
-  return output.join('\n');
-}
-
-/**
- * Requests consent from the user to install an extension (extensionConfig), if
- * there is any difference between the consent string for `extensionConfig` and
- * `previousExtensionConfig`.
- *
- * Always requests consent if previousExtensionConfig is null.
- *
- * Throws if the user does not consent.
- */
-async function maybeRequestConsentOrFail(
-  extensionConfig: ExtensionConfig,
-  requestConsent: (consent: string) => Promise<boolean>,
-  previousExtensionConfig?: ExtensionConfig,
-) {
-  const extensionConsent = extensionConsentString(extensionConfig);
-  if (previousExtensionConfig) {
-    const previousExtensionConsent = extensionConsentString(
-      previousExtensionConfig,
-    );
-    if (previousExtensionConsent === extensionConsent) {
-      return;
-    }
-  }
-  if (!(await requestConsent(extensionConsent))) {
-    throw new Error(`Installation cancelled for "${extensionConfig.name}".`);
-  }
-}
-
-export function validateName(name: string) {
-  if (!/^[a-zA-Z0-9-]+$/.test(name)) {
-    throw new Error(
-      `Invalid extension name: "${name}". Only letters (a-z, A-Z), numbers (0-9), and dashes (-) are allowed.`,
-    );
-  }
-}
-
-export function loadExtensionConfig(
-  context: LoadExtensionContext,
-): ExtensionConfig {
-  const { extensionDir, workspaceDir } = context;
-  const configFilePath = path.join(extensionDir, EXTENSIONS_CONFIG_FILENAME);
-  if (!fs.existsSync(configFilePath)) {
-    throw new Error(`Configuration file not found at ${configFilePath}`);
-  }
-  try {
-    const configContent = fs.readFileSync(configFilePath, 'utf-8');
-    const config = recursivelyHydrateStrings(JSON.parse(configContent), {
-      extensionPath: extensionDir,
-      workspacePath: workspaceDir,
-      '/': path.sep,
-      pathSeparator: path.sep,
-    }) as unknown as ExtensionConfig;
-    if (!config.name || !config.version) {
-      throw new Error(
-        `Invalid configuration in ${configFilePath}: missing ${!config.name ? '"name"' : '"version"'}`,
-      );
-    }
-    validateName(config.name);
-    return config;
-  } catch (e) {
-    throw new Error(
-      `Failed to load extension config from ${configFilePath}: ${getErrorMessage(
-        e,
-      )}`,
-    );
-  }
-}
-
-export async function uninstallExtension(
-  extensionIdentifier: string,
-  cwd: string = process.cwd(),
-): Promise<void> {
-  const telemetryConfig = getTelemetryConfig(cwd);
-  const installedExtensions = loadUserExtensions();
-  const extensionName = installedExtensions.find(
-    (installed) =>
-      installed.config.name.toLowerCase() ===
-        extensionIdentifier.toLowerCase() ||
-      installed.installMetadata?.source.toLowerCase() ===
-        extensionIdentifier.toLowerCase(),
-  )?.config.name;
-  if (!extensionName) {
-    throw new Error(`Extension not found.`);
-  }
-  const manager = new ExtensionEnablementManager(
-    ExtensionStorage.getUserExtensionsDir(),
-    [extensionName],
-  );
-  manager.remove(extensionName);
-  const storage = new ExtensionStorage(extensionName);
-
-  await fs.promises.rm(storage.getExtensionDir(), {
-    recursive: true,
-    force: true,
-  });
-  logExtensionUninstall(
-    telemetryConfig,
-    new ExtensionUninstallEvent(extensionName, 'success'),
-  );
-}
-
-export function toOutputString(
-  extension: Extension,
-  workspaceDir: string,
-): string {
-  const manager = new ExtensionEnablementManager(
-    ExtensionStorage.getUserExtensionsDir(),
-  );
-  const userEnabled = manager.isEnabled(extension.config.name, os.homedir());
-  const workspaceEnabled = manager.isEnabled(
-    extension.config.name,
-    workspaceDir,
-  );
-
-  const status = workspaceEnabled ? chalk.green('✓') : chalk.red('✗');
-  let output = `${status} ${extension.config.name} (${extension.config.version})`;
-  output += `\n Path: ${extension.path}`;
-  if (extension.installMetadata) {
-    output += `\n Source: ${extension.installMetadata.source} (Type: ${extension.installMetadata.type})`;
-    if (extension.installMetadata.ref) {
-      output += `\n Ref: ${extension.installMetadata.ref}`;
-    }
-    if (extension.installMetadata.releaseTag) {
-      output += `\n Release tag: ${extension.installMetadata.releaseTag}`;
-    }
-  }
-  output += `\n Enabled (User): ${userEnabled}`;
-  output += `\n Enabled (Workspace): ${workspaceEnabled}`;
-  if (extension.contextFiles.length > 0) {
-    output += `\n Context files:`;
-    extension.contextFiles.forEach((contextFile) => {
-      output += `\n  ${contextFile}`;
-    });
-  }
-  if (extension.config.mcpServers) {
-    output += `\n MCP servers:`;
-    Object.keys(extension.config.mcpServers).forEach((key) => {
-      output += `\n  ${key}`;
-    });
-  }
-  if (extension.config.excludeTools) {
-    output += `\n Excluded tools:`;
-    extension.config.excludeTools.forEach((tool) => {
-      output += `\n  ${tool}`;
-    });
-  }
-  return output;
-}
-
-export function disableExtension(
-  name: string,
-  scope: SettingScope,
-  cwd: string = process.cwd(),
-) {
-  const config = getTelemetryConfig(cwd);
-  if (scope === SettingScope.System || scope === SettingScope.SystemDefaults) {
-    throw new Error('System and SystemDefaults scopes are not supported.');
-  }
-  const extension = loadExtensionByName(name, cwd);
-  if (!extension) {
-    throw new Error(`Extension with name ${name} does not exist.`);
-  }
-
-  const manager = new ExtensionEnablementManager(
-    ExtensionStorage.getUserExtensionsDir(),
-    [name],
-  );
-  const scopePath = scope === SettingScope.Workspace ? cwd : os.homedir();
-  manager.disable(name, true, scopePath);
-  logExtensionDisable(config, new ExtensionDisableEvent(name, scope));
-}
-
-export function enableExtension(
-  name: string,
-  scope: SettingScope,
-  cwd: string = process.cwd(),
-) {
-  if (scope === SettingScope.System || scope === SettingScope.SystemDefaults) {
-    throw new Error('System and SystemDefaults scopes are not supported.');
-  }
-  const extension = loadExtensionByName(name, cwd);
-  if (!extension) {
-    throw new Error(`Extension with name ${name} does not exist.`);
-  }
-  const manager = new ExtensionEnablementManager(
-    ExtensionStorage.getUserExtensionsDir(),
-  );
-  const scopePath = scope === SettingScope.Workspace ? cwd : os.homedir();
-  manager.enable(name, true, scopePath);
-  const config = getTelemetryConfig(cwd);
-  logExtensionEnable(config, new ExtensionEnableEvent(name, scope));
-}

packages/cli/src/config/extensions/extensionEnablement.test.ts

@@ -1,424 +0,0 @@
-/**
- * @license
- * Copyright 2025 Google LLC
- * SPDX-License-Identifier: Apache-2.0
- */
-
-import * as path from 'node:path';
-import fs from 'node:fs';
-import os from 'node:os';
-import { afterEach, beforeEach, describe, expect, it } from 'vitest';
-import { ExtensionEnablementManager, Override } from './extensionEnablement.js';
-import type { Extension } from '../extension.js';
-
-// Helper to create a temporary directory for testing
-function createTestDir() {
-  const dirPath = fs.mkdtempSync(path.join(os.tmpdir(), 'gemini-test-'));
-  return {
-    path: dirPath,
-    cleanup: () => fs.rmSync(dirPath, { recursive: true, force: true }),
-  };
-}
-
-let testDir: { path: string; cleanup: () => void };
-let configDir: string;
-let manager: ExtensionEnablementManager;
-
-describe('ExtensionEnablementManager', () => {
-  beforeEach(() => {
-    testDir = createTestDir();
-    configDir = path.join(testDir.path, '.gemini');
-    manager = new ExtensionEnablementManager(configDir);
-  });
-
-  afterEach(() => {
-    testDir.cleanup();
-    // Reset the singleton instance for test isolation
-    // eslint-disable-next-line @typescript-eslint/no-explicit-any
-    (ExtensionEnablementManager as any).instance = undefined;
-  });
-
-  describe('isEnabled', () => {
-    it('should return true if extension is not configured', () => {
-      expect(manager.isEnabled('ext-test', '/any/path')).toBe(true);
-    });
-
-    it('should return true if no overrides match', () => {
-      manager.disable('ext-test', false, '/another/path');
-      expect(manager.isEnabled('ext-test', '/any/path')).toBe(true);
-    });
-
-    it('should enable a path based on an override rule', () => {
-      manager.disable('ext-test', true, '/');
-      manager.enable('ext-test', true, '/home/user/projects/');
-      expect(manager.isEnabled('ext-test', '/home/user/projects/my-app')).toBe(
-        true,
-      );
-    });
-
-    it('should disable a path based on a disable override rule', () => {
-      manager.enable('ext-test', true, '/');
-      manager.disable('ext-test', true, '/home/user/projects/');
-      expect(manager.isEnabled('ext-test', '/home/user/projects/my-app')).toBe(
-        false,
-      );
-    });
-
-    it('should respect the last matching rule (enable wins)', () => {
-      manager.disable('ext-test', true, '/home/user/projects/');
-      manager.enable('ext-test', false, '/home/user/projects/my-app');
-      expect(manager.isEnabled('ext-test', '/home/user/projects/my-app')).toBe(
-        true,
-      );
-    });
-
-    it('should respect the last matching rule (disable wins)', () => {
-      manager.enable('ext-test', true, '/home/user/projects/');
-      manager.disable('ext-test', false, '/home/user/projects/my-app');
-      expect(manager.isEnabled('ext-test', '/home/user/projects/my-app')).toBe(
-        false,
-      );
-    });
-
-    it('should handle', () => {
-      manager.enable('ext-test', true, '/home/user/projects');
-      manager.disable('ext-test', false, '/home/user/projects/my-app');
-      expect(manager.isEnabled('ext-test', '/home/user/projects/my-app')).toBe(
-        false,
-      );
-      expect(
-        manager.isEnabled('ext-test', '/home/user/projects/something-else'),
-      ).toBe(true);
-    });
-  });
-
-  describe('includeSubdirs', () => {
-    it('should add a glob when enabling with includeSubdirs', () => {
-      manager.enable('ext-test', true, '/path/to/dir');
-      const config = manager.readConfig();
-      expect(config['ext-test'].overrides).toContain('/path/to/dir/*');
-    });
-
-    it('should not add a glob when enabling without includeSubdirs', () => {
-      manager.enable('ext-test', false, '/path/to/dir');
-      const config = manager.readConfig();
-      expect(config['ext-test'].overrides).toContain('/path/to/dir/');
-      expect(config['ext-test'].overrides).not.toContain('/path/to/dir/*');
-    });
-
-    it('should add a glob when disabling with includeSubdirs', () => {
-      manager.disable('ext-test', true, '/path/to/dir');
-      const config = manager.readConfig();
-      expect(config['ext-test'].overrides).toContain('!/path/to/dir/*');
-    });
-
-    it('should remove conflicting glob rule when enabling without subdirs', () => {
-      manager.enable('ext-test', true, '/path/to/dir'); // Adds /path/to/dir*
-      manager.enable('ext-test', false, '/path/to/dir'); // Should remove the glob
-      const config = manager.readConfig();
-      expect(config['ext-test'].overrides).toContain('/path/to/dir/');
-      expect(config['ext-test'].overrides).not.toContain('/path/to/dir/*');
-    });
-
-    it('should remove conflicting non-glob rule when enabling with subdirs', () => {
-      manager.enable('ext-test', false, '/path/to/dir'); // Adds /path/to/dir
-      manager.enable('ext-test', true, '/path/to/dir'); // Should remove the non-glob
-      const config = manager.readConfig();
-      expect(config['ext-test'].overrides).toContain('/path/to/dir/*');
-      expect(config['ext-test'].overrides).not.toContain('/path/to/dir/');
-    });
-
-    it('should remove conflicting rules when disabling', () => {
-      manager.enable('ext-test', true, '/path/to/dir'); // enabled with glob
-      manager.disable('ext-test', false, '/path/to/dir'); // disabled without
-      const config = manager.readConfig();
-      expect(config['ext-test'].overrides).toContain('!/path/to/dir/');
-      expect(config['ext-test'].overrides).not.toContain('/path/to/dir/*');
-    });
-
-    it('should correctly evaluate isEnabled with subdirs', () => {
-      manager.disable('ext-test', true, '/');
-      manager.enable('ext-test', true, '/path/to/dir');
-      expect(manager.isEnabled('ext-test', '/path/to/dir/')).toBe(true);
-      expect(manager.isEnabled('ext-test', '/path/to/dir/sub/')).toBe(true);
-      expect(manager.isEnabled('ext-test', '/path/to/another/')).toBe(false);
-    });
-
-    it('should correctly evaluate isEnabled without subdirs', () => {
-      manager.disable('ext-test', true, '/*');
-      manager.enable('ext-test', false, '/path/to/dir');
-      expect(manager.isEnabled('ext-test', '/path/to/dir')).toBe(true);
-      expect(manager.isEnabled('ext-test', '/path/to/dir/sub')).toBe(false);
-    });
-  });
-
-  describe('pruning child rules', () => {
-    it('should remove child rules when enabling a parent with subdirs', () => {
-      // Pre-existing rules for children
-      manager.enable('ext-test', false, '/path/to/dir/subdir1');
-      manager.disable('ext-test', true, '/path/to/dir/subdir2');
-      manager.enable('ext-test', false, '/path/to/another/dir');
-
-      // Enable the parent directory
-      manager.enable('ext-test', true, '/path/to/dir');
-
-      const config = manager.readConfig();
-      const overrides = config['ext-test'].overrides;
-
-      // The new parent rule should be present
-      expect(overrides).toContain(`/path/to/dir/*`);
-
-      // Child rules should be removed
-      expect(overrides).not.toContain('/path/to/dir/subdir1/');
-      expect(overrides).not.toContain(`!/path/to/dir/subdir2/*`);
-
-      // Unrelated rules should remain
-      expect(overrides).toContain('/path/to/another/dir/');
-    });
-
-    it('should remove child rules when disabling a parent with subdirs', () => {
-      // Pre-existing rules for children
-      manager.enable('ext-test', false, '/path/to/dir/subdir1');
-      manager.disable('ext-test', true, '/path/to/dir/subdir2');
-      manager.enable('ext-test', false, '/path/to/another/dir');
-
-      // Disable the parent directory
-      manager.disable('ext-test', true, '/path/to/dir');
-
-      const config = manager.readConfig();
-      const overrides = config['ext-test'].overrides;
-
-      // The new parent rule should be present
-      expect(overrides).toContain(`!/path/to/dir/*`);
-
-      // Child rules should be removed
-      expect(overrides).not.toContain('/path/to/dir/subdir1/');
-      expect(overrides).not.toContain(`!/path/to/dir/subdir2/*`);
-
-      // Unrelated rules should remain
-      expect(overrides).toContain('/path/to/another/dir/');
-    });
-
-    it('should not remove child rules if includeSubdirs is false', () => {
-      manager.enable('ext-test', false, '/path/to/dir/subdir1');
-      manager.enable('ext-test', false, '/path/to/dir'); // Not including subdirs
-
-      const config = manager.readConfig();
-      const overrides = config['ext-test'].overrides;
-
-      expect(overrides).toContain('/path/to/dir/subdir1/');
-      expect(overrides).toContain('/path/to/dir/');
-    });
-  });
-
-  it('should enable a path based on an enable override', () => {
-    manager.disable('ext-test', true, '/Users/chrstn');
-    manager.enable('ext-test', true, '/Users/chrstn/gemini-cli');
-
-    expect(manager.isEnabled('ext-test', '/Users/chrstn/gemini-cli')).toBe(
-      true,
-    );
-  });
-
-  it('should ignore subdirs', () => {
-    manager.disable('ext-test', false, '/Users/chrstn');
-    expect(manager.isEnabled('ext-test', '/Users/chrstn/gemini-cli')).toBe(
-      true,
-    );
-  });
-
-  describe('extension overrides (-e <name>)', () => {
-    beforeEach(() => {
-      manager = new ExtensionEnablementManager(configDir, ['ext-test']);
-    });
-
-    it('can enable extensions, case-insensitive', () => {
-      manager.disable('ext-test', true, '/');
-      expect(manager.isEnabled('ext-test', '/')).toBe(true);
-      expect(manager.isEnabled('Ext-Test', '/')).toBe(true);
-      // Double check that it would have been disabled otherwise
-      expect(
-        new ExtensionEnablementManager(configDir).isEnabled('ext-test', '/'),
-      ).toBe(false);
-    });
-
-    it('disable all other extensions', () => {
-      manager = new ExtensionEnablementManager(configDir, ['ext-test']);
-      manager.enable('ext-test-2', true, '/');
-      expect(manager.isEnabled('ext-test-2', '/')).toBe(false);
-      // Double check that it would have been enabled otherwise
-      expect(
-        new ExtensionEnablementManager(configDir).isEnabled('ext-test-2', '/'),
-      ).toBe(true);
-    });
-
-    it('none disables all extensions', () => {
-      manager = new ExtensionEnablementManager(configDir, ['none']);
-      manager.enable('ext-test', true, '/');
-      expect(manager.isEnabled('ext-test', '/path/to/dir')).toBe(false);
-      // Double check that it would have been enabled otherwise
-      expect(
-        new ExtensionEnablementManager(configDir).isEnabled('ext-test', '/'),
-      ).toBe(true);
-    });
-  });
-
-  describe('validateExtensionOverrides', () => {
-    let consoleErrorSpy: ReturnType<typeof vi.spyOn>;
-
-    beforeEach(() => {
-      consoleErrorSpy = vi.spyOn(console, 'error').mockImplementation(() => {});
-    });
-
-    afterEach(() => {
-      consoleErrorSpy.mockRestore();
-    });
-
-    it('should not log an error if enabledExtensionNamesOverride is empty', () => {
-      const manager = new ExtensionEnablementManager(configDir, []);
-      manager.validateExtensionOverrides([]);
-      expect(consoleErrorSpy).not.toHaveBeenCalled();
-    });
-
-    it('should not log an error if all enabledExtensionNamesOverride are valid', () => {
-      const manager = new ExtensionEnablementManager(configDir, [
-        'ext-one',
-        'ext-two',
-      ]);
-      const extensions = [
-        { config: { name: 'ext-one' } },
-        { config: { name: 'ext-two' } },
-      ] as Extension[];
-      manager.validateExtensionOverrides(extensions);
-      expect(consoleErrorSpy).not.toHaveBeenCalled();
-    });
-
-    it('should log an error for each invalid extension name in enabledExtensionNamesOverride', () => {
-      const manager = new ExtensionEnablementManager(configDir, [
-        'ext-one',
-        'ext-invalid',
-        'ext-another-invalid',
-      ]);
-      const extensions = [
-        { config: { name: 'ext-one' } },
-        { config: { name: 'ext-two' } },
-      ] as Extension[];
-      manager.validateExtensionOverrides(extensions);
-      expect(consoleErrorSpy).toHaveBeenCalledTimes(2);
-      expect(consoleErrorSpy).toHaveBeenCalledWith(
-        'Extension not found: ext-invalid',
-      );
-      expect(consoleErrorSpy).toHaveBeenCalledWith(
-        'Extension not found: ext-another-invalid',
-      );
-    });
-
-    it('should not log an error if "none" is in enabledExtensionNamesOverride', () => {
-      const manager = new ExtensionEnablementManager(configDir, ['none']);
-      manager.validateExtensionOverrides([]);
-      expect(consoleErrorSpy).not.toHaveBeenCalled();
-    });
-  });
-});
-
-describe('Override', () => {
-  it('should create an override from input', () => {
-    const override = Override.fromInput('/path/to/dir', true);
-    expect(override.baseRule).toBe(`/path/to/dir/`);
-    expect(override.isDisable).toBe(false);
-    expect(override.includeSubdirs).toBe(true);
-  });
-
-  it('should create a disable override from input', () => {
-    const override = Override.fromInput('!/path/to/dir', false);
-    expect(override.baseRule).toBe(`/path/to/dir/`);
-    expect(override.isDisable).toBe(true);
-    expect(override.includeSubdirs).toBe(false);
-  });
-
-  it('should create an override from a file rule', () => {
-    const override = Override.fromFileRule('/path/to/dir');
-    expect(override.baseRule).toBe('/path/to/dir');
-    expect(override.isDisable).toBe(false);
-    expect(override.includeSubdirs).toBe(false);
-  });
-
-  it('should create a disable override from a file rule', () => {
-    const override = Override.fromFileRule('!/path/to/dir/');
-    expect(override.isDisable).toBe(true);
-    expect(override.baseRule).toBe('/path/to/dir/');
-    expect(override.includeSubdirs).toBe(false);
-  });
-
-  it('should create an override with subdirs from a file rule', () => {
-    const override = Override.fromFileRule('/path/to/dir/*');
-    expect(override.baseRule).toBe('/path/to/dir/');
-    expect(override.isDisable).toBe(false);
-    expect(override.includeSubdirs).toBe(true);
-  });
-
-  it('should correctly identify conflicting overrides', () => {
-    const override1 = Override.fromInput('/path/to/dir', true);
-    const override2 = Override.fromInput('/path/to/dir', false);
-    expect(override1.conflictsWith(override2)).toBe(true);
-  });
-
-  it('should correctly identify non-conflicting overrides', () => {
-    const override1 = Override.fromInput('/path/to/dir', true);
-    const override2 = Override.fromInput('/path/to/another/dir', true);
-    expect(override1.conflictsWith(override2)).toBe(false);
-  });
-
-  it('should correctly identify equal overrides', () => {
-    const override1 = Override.fromInput('/path/to/dir', true);
-    const override2 = Override.fromInput('/path/to/dir', true);
-    expect(override1.isEqualTo(override2)).toBe(true);
-  });
-
-  it('should correctly identify unequal overrides', () => {
-    const override1 = Override.fromInput('/path/to/dir', true);
-    const override2 = Override.fromInput('!/path/to/dir', true);
-    expect(override1.isEqualTo(override2)).toBe(false);
-  });
-
-  it('should generate the correct regex', () => {
-    const override = Override.fromInput('/path/to/dir', true);
-    const regex = override.asRegex();
-    expect(regex.test('/path/to/dir/')).toBe(true);
-    expect(regex.test('/path/to/dir/subdir')).toBe(true);
-    expect(regex.test('/path/to/another/dir')).toBe(false);
-  });
-
-  it('should correctly identify child overrides', () => {
-    const parent = Override.fromInput('/path/to/dir', true);
-    const child = Override.fromInput('/path/to/dir/subdir', false);
-    expect(child.isChildOf(parent)).toBe(true);
-  });
-
-  it('should correctly identify child overrides with glob', () => {
-    const parent = Override.fromInput('/path/to/dir/*', true);
-    const child = Override.fromInput('/path/to/dir/subdir', false);
-    expect(child.isChildOf(parent)).toBe(true);
-  });
-
-  it('should correctly identify non-child overrides', () => {
-    const parent = Override.fromInput('/path/to/dir', true);
-    const other = Override.fromInput('/path/to/another/dir', false);
-    expect(other.isChildOf(parent)).toBe(false);
-  });
-
-  it('should generate the correct output string', () => {
-    const override = Override.fromInput('/path/to/dir', true);
-    expect(override.output()).toBe(`/path/to/dir/*`);
-  });
-
-  it('should generate the correct output string for a disable override', () => {
-    const override = Override.fromInput('!/path/to/dir', false);
-    expect(override.output()).toBe(`!/path/to/dir/`);
-  });
-
-  it('should disable a path based on a disable override rule', () => {
-    const override = Override.fromInput('!/path/to/dir', false);
-    expect(override.output()).toBe(`!/path/to/dir/`);
-  });
-});

packages/cli/src/config/extensions/extensionEnablement.ts

@@ -1,239 +0,0 @@
-/**
- * @license
- * Copyright 2025 Google LLC
- * SPDX-License-Identifier: Apache-2.0
- */
-
-import fs from 'node:fs';
-import path from 'node:path';
-import { type Extension } from '../extension.js';
-
-export interface ExtensionEnablementConfig {
-  overrides: string[];
-}
-
-export interface AllExtensionsEnablementConfig {
-  [extensionName: string]: ExtensionEnablementConfig;
-}
-
-export class Override {
-  constructor(
-    public baseRule: string,
-    public isDisable: boolean,
-    public includeSubdirs: boolean,
-  ) {}
-
-  static fromInput(inputRule: string, includeSubdirs: boolean): Override {
-    const isDisable = inputRule.startsWith('!');
-    let baseRule = isDisable ? inputRule.substring(1) : inputRule;
-    baseRule = ensureLeadingAndTrailingSlash(baseRule);
-    return new Override(baseRule, isDisable, includeSubdirs);
-  }
-
-  static fromFileRule(fileRule: string): Override {
-    const isDisable = fileRule.startsWith('!');
-    let baseRule = isDisable ? fileRule.substring(1) : fileRule;
-    const includeSubdirs = baseRule.endsWith('*');
-    baseRule = includeSubdirs
-      ? baseRule.substring(0, baseRule.length - 1)
-      : baseRule;
-    return new Override(baseRule, isDisable, includeSubdirs);
-  }
-
-  conflictsWith(other: Override): boolean {
-    if (this.baseRule === other.baseRule) {
-      return (
-        this.includeSubdirs !== other.includeSubdirs ||
-        this.isDisable !== other.isDisable
-      );
-    }
-    return false;
-  }
-
-  isEqualTo(other: Override): boolean {
-    return (
-      this.baseRule === other.baseRule &&
-      this.includeSubdirs === other.includeSubdirs &&
-      this.isDisable === other.isDisable
-    );
-  }
-
-  asRegex(): RegExp {
-    return globToRegex(`${this.baseRule}${this.includeSubdirs ? '*' : ''}`);
-  }
-
-  isChildOf(parent: Override) {
-    if (!parent.includeSubdirs) {
-      return false;
-    }
-    return parent.asRegex().test(this.baseRule);
-  }
-
-  output(): string {
-    return `${this.isDisable ? '!' : ''}${this.baseRule}${this.includeSubdirs ? '*' : ''}`;
-  }
-
-  matchesPath(path: string) {
-    return this.asRegex().test(path);
-  }
-}
-
-const ensureLeadingAndTrailingSlash = function (dirPath: string): string {
-  // Normalize separators to forward slashes for consistent matching across platforms.
-  let result = dirPath.replace(/\\/g, '/');
-  if (result.charAt(0) !== '/') {
-    result = '/' + result;
-  }
-  if (result.charAt(result.length - 1) !== '/') {
-    result = result + '/';
-  }
-  return result;
-};
-
-/**
- * Converts a glob pattern to a RegExp object.
- * This is a simplified implementation that supports `*`.
- *
- * @param glob The glob pattern to convert.
- * @returns A RegExp object.
- */
-function globToRegex(glob: string): RegExp {
-  const regexString = glob
-    .replace(/[.+?^${}()|[\]\\]/g, '\\$&') // Escape special regex characters
-    .replace(/(\/?)\*/g, '($1.*)?'); // Convert * to optional group
-
-  return new RegExp(`^${regexString}$`);
-}
-
-export class ExtensionEnablementManager {
-  private configFilePath: string;
-  private configDir: string;
-  // If non-empty, this overrides all other extension configuration and enables
-  // only the ones in this list.
-  private enabledExtensionNamesOverride: string[];
-
-  constructor(configDir: string, enabledExtensionNames?: string[]) {
-    this.configDir = configDir;
-    this.configFilePath = path.join(configDir, 'extension-enablement.json');
-    this.enabledExtensionNamesOverride =
-      enabledExtensionNames?.map((name) => name.toLowerCase()) ?? [];
-  }
-
-  validateExtensionOverrides(extensions: Extension[]) {
-    for (const name of this.enabledExtensionNamesOverride) {
-      if (name === 'none') continue;
-      if (
-        !extensions.some(
-          (ext) => ext.config.name.toLowerCase() === name.toLowerCase(),
-        )
-      ) {
-        console.error(`Extension not found: ${name}`);
-      }
-    }
-  }
-
-  /**
-   * Determines if an extension is enabled based on its name and the current
-   * path. The last matching rule in the overrides list wins.
-   *
-   * @param extensionName The name of the extension.
-   * @param currentPath The absolute path of the current working directory.
-   * @returns True if the extension is enabled, false otherwise.
-   */
-  isEnabled(extensionName: string, currentPath: string): boolean {
-    // If we have a single override called 'none', this disables all extensions.
-    // Typically, this comes from the user passing `-e none`.
-    if (
-      this.enabledExtensionNamesOverride.length === 1 &&
-      this.enabledExtensionNamesOverride[0] === 'none'
-    ) {
-      return false;
-    }
-
-    // If we have explicit overrides, only enable those extensions.
-    if (this.enabledExtensionNamesOverride.length > 0) {
-      // When checking against overrides ONLY, we use a case insensitive match.
-      // The override names are already lowercased in the constructor.
-      return this.enabledExtensionNamesOverride.includes(
-        extensionName.toLocaleLowerCase(),
-      );
-    }
-
-    // Otherwise, we use the configuration settings
-    const config = this.readConfig();
-    const extensionConfig = config[extensionName];
-    // Extensions are enabled by default.
-    let enabled = true;
-    const allOverrides = extensionConfig?.overrides ?? [];
-    for (const rule of allOverrides) {
-      const override = Override.fromFileRule(rule);
-      if (override.matchesPath(ensureLeadingAndTrailingSlash(currentPath))) {
-        enabled = !override.isDisable;
-      }
-    }
-    return enabled;
-  }
-
-  readConfig(): AllExtensionsEnablementConfig {
-    try {
-      const content = fs.readFileSync(this.configFilePath, 'utf-8');
-      return JSON.parse(content);
-    } catch (error) {
-      if (
-        error instanceof Error &&
-        'code' in error &&
-        error.code === 'ENOENT'
-      ) {
-        return {};
-      }
-      console.error('Error reading extension enablement config:', error);
-      return {};
-    }
-  }
-
-  writeConfig(config: AllExtensionsEnablementConfig): void {
-    fs.mkdirSync(this.configDir, { recursive: true });
-    fs.writeFileSync(this.configFilePath, JSON.stringify(config, null, 2));
-  }
-
-  enable(
-    extensionName: string,
-    includeSubdirs: boolean,
-    scopePath: string,
-  ): void {
-    const config = this.readConfig();
-    if (!config[extensionName]) {
-      config[extensionName] = { overrides: [] };
-    }
-    const override = Override.fromInput(scopePath, includeSubdirs);
-    const overrides = config[extensionName].overrides.filter((rule) => {
-      const fileOverride = Override.fromFileRule(rule);
-      if (
-        fileOverride.conflictsWith(override) ||
-        fileOverride.isEqualTo(override)
-      ) {
-        return false; // Remove conflicts and equivalent values.
-      }
-      return !fileOverride.isChildOf(override);
-    });
-    overrides.push(override.output());
-    config[extensionName].overrides = overrides;
-    this.writeConfig(config);
-  }
-
-  disable(
-    extensionName: string,
-    includeSubdirs: boolean,
-    scopePath: string,
-  ): void {
-    this.enable(extensionName, includeSubdirs, `!${scopePath}`);
-  }
-
-  remove(extensionName: string): void {
-    const config = this.readConfig();
-    if (config[extensionName]) {
-      delete config[extensionName];
-      this.writeConfig(config);
-    }
-  }
-}

packages/cli/src/config/extensions/update.test.ts

@@ -1,468 +0,0 @@
-/**
- * @license
- * Copyright 2025 Google LLC
- * SPDX-License-Identifier: Apache-2.0
- */
-
-import { vi } from 'vitest';
-import * as fs from 'node:fs';
-import * as os from 'node:os';
-import * as path from 'node:path';
-import {
-  EXTENSIONS_CONFIG_FILENAME,
-  ExtensionStorage,
-  INSTALL_METADATA_FILENAME,
-  annotateActiveExtensions,
-  loadExtension,
-} from '../extension.js';
-import { checkForAllExtensionUpdates, updateExtension } from './update.js';
-import { QWEN_DIR } from '@qwen-code/qwen-code-core';
-import { isWorkspaceTrusted } from '../trustedFolders.js';
-import { ExtensionUpdateState } from '../../ui/state/extensions.js';
-import { createExtension } from '../../test-utils/createExtension.js';
-import { ExtensionEnablementManager } from './extensionEnablement.js';
-
-const mockGit = {
-  clone: vi.fn(),
-  getRemotes: vi.fn(),
-  fetch: vi.fn(),
-  checkout: vi.fn(),
-  listRemote: vi.fn(),
-  revparse: vi.fn(),
-  // Not a part of the actual API, but we need to use this to do the correct
-  // file system interactions.
-  path: vi.fn(),
-};
-
-vi.mock('simple-git', () => ({
-  simpleGit: vi.fn((path: string) => {
-    mockGit.path.mockReturnValue(path);
-    return mockGit;
-  }),
-}));
-
-vi.mock('../extensions/github.js', async (importOriginal) => {
-  const actual =
-    await importOriginal<typeof import('../extensions/github.js')>();
-  return {
-    ...actual,
-    downloadFromGitHubRelease: vi
-      .fn()
-      .mockRejectedValue(new Error('Mocked GitHub release download failure')),
-  };
-});
-
-vi.mock('os', async (importOriginal) => {
-  const mockedOs = await importOriginal<typeof os>();
-  return {
-    ...mockedOs,
-    homedir: vi.fn(),
-  };
-});
-
-vi.mock('../trustedFolders.js', async (importOriginal) => {
-  const actual = await importOriginal<typeof import('../trustedFolders.js')>();
-  return {
-    ...actual,
-    isWorkspaceTrusted: vi.fn(),
-  };
-});
-
-const mockLogExtensionInstallEvent = vi.hoisted(() => vi.fn());
-const mockLogExtensionUninstall = vi.hoisted(() => vi.fn());
-
-vi.mock('@qwen-code/qwen-code-core', async (importOriginal) => {
-  const actual =
-    await importOriginal<typeof import('@qwen-code/qwen-code-core')>();
-  return {
-    ...actual,
-    logExtensionInstallEvent: mockLogExtensionInstallEvent,
-    logExtensionUninstall: mockLogExtensionUninstall,
-    ExtensionInstallEvent: vi.fn(),
-    ExtensionUninstallEvent: vi.fn(),
-  };
-});
-
-describe('update tests', () => {
-  let tempHomeDir: string;
-  let tempWorkspaceDir: string;
-  let userExtensionsDir: string;
-
-  beforeEach(() => {
-    tempHomeDir = fs.mkdtempSync(
-      path.join(os.tmpdir(), 'qwen-code-test-home-'),
-    );
-    tempWorkspaceDir = fs.mkdtempSync(
-      path.join(tempHomeDir, 'qwen-code-test-workspace-'),
-    );
-    vi.mocked(os.homedir).mockReturnValue(tempHomeDir);
-    userExtensionsDir = path.join(tempHomeDir, QWEN_DIR, 'extensions');
-    // Clean up before each test
-    fs.rmSync(userExtensionsDir, { recursive: true, force: true });
-    fs.mkdirSync(userExtensionsDir, { recursive: true });
-    vi.mocked(isWorkspaceTrusted).mockReturnValue({
-      isTrusted: true,
-      source: 'file',
-    });
-    vi.spyOn(process, 'cwd').mockReturnValue(tempWorkspaceDir);
-    Object.values(mockGit).forEach((fn) => fn.mockReset());
-  });
-
-  afterEach(() => {
-    fs.rmSync(tempHomeDir, { recursive: true, force: true });
-    fs.rmSync(tempWorkspaceDir, { recursive: true, force: true });
-  });
-
-  describe('updateExtension', () => {
-    it('should update a git-installed extension', async () => {
-      const gitUrl = 'https://github.com/google/gemini-extensions.git';
-      const extensionName = 'qwen-extensions';
-      const targetExtDir = path.join(userExtensionsDir, extensionName);
-      const metadataPath = path.join(targetExtDir, INSTALL_METADATA_FILENAME);
-
-      fs.mkdirSync(targetExtDir, { recursive: true });
-      fs.writeFileSync(
-        path.join(targetExtDir, EXTENSIONS_CONFIG_FILENAME),
-        JSON.stringify({ name: extensionName, version: '1.0.0' }),
-      );
-      fs.writeFileSync(
-        metadataPath,
-        JSON.stringify({ source: gitUrl, type: 'git' }),
-      );
-
-      mockGit.clone.mockImplementation(async (_, destination) => {
-        fs.mkdirSync(path.join(mockGit.path(), destination), {
-          recursive: true,
-        });
-        fs.writeFileSync(
-          path.join(mockGit.path(), destination, EXTENSIONS_CONFIG_FILENAME),
-          JSON.stringify({ name: extensionName, version: '1.1.0' }),
-        );
-      });
-      mockGit.getRemotes.mockResolvedValue([{ name: 'origin' }]);
-      const extension = annotateActiveExtensions(
-        [
-          loadExtension({
-            extensionDir: targetExtDir,
-            workspaceDir: tempWorkspaceDir,
-          })!,
-        ],
-        process.cwd(),
-        new ExtensionEnablementManager(ExtensionStorage.getUserExtensionsDir()),
-      )[0];
-      const updateInfo = await updateExtension(
-        extension,
-        tempHomeDir,
-        async (_) => true,
-        ExtensionUpdateState.UPDATE_AVAILABLE,
-        () => {},
-      );
-
-      expect(updateInfo).toEqual({
-        name: 'qwen-extensions',
-        originalVersion: '1.0.0',
-        updatedVersion: '1.1.0',
-      });
-
-      const updatedConfig = JSON.parse(
-        fs.readFileSync(
-          path.join(targetExtDir, EXTENSIONS_CONFIG_FILENAME),
-          'utf-8',
-        ),
-      );
-      expect(updatedConfig.version).toBe('1.1.0');
-    });
-
-    it('should call setExtensionUpdateState with UPDATING and then UPDATED_NEEDS_RESTART on success', async () => {
-      const extensionName = 'test-extension';
-      const extensionDir = createExtension({
-        extensionsDir: userExtensionsDir,
-        name: extensionName,
-        version: '1.0.0',
-        installMetadata: {
-          source: 'https://some.git/repo',
-          type: 'git',
-        },
-      });
-
-      mockGit.clone.mockImplementation(async (_, destination) => {
-        fs.mkdirSync(path.join(mockGit.path(), destination), {
-          recursive: true,
-        });
-        fs.writeFileSync(
-          path.join(mockGit.path(), destination, EXTENSIONS_CONFIG_FILENAME),
-          JSON.stringify({ name: extensionName, version: '1.1.0' }),
-        );
-      });
-      mockGit.getRemotes.mockResolvedValue([{ name: 'origin' }]);
-
-      const dispatch = vi.fn();
-      const extension = annotateActiveExtensions(
-        [
-          loadExtension({
-            extensionDir,
-            workspaceDir: tempWorkspaceDir,
-          })!,
-        ],
-        process.cwd(),
-        new ExtensionEnablementManager(ExtensionStorage.getUserExtensionsDir()),
-      )[0];
-      await updateExtension(
-        extension,
-        tempHomeDir,
-        async (_) => true,
-        ExtensionUpdateState.UPDATE_AVAILABLE,
-        dispatch,
-      );
-
-      expect(dispatch).toHaveBeenCalledWith({
-        type: 'SET_STATE',
-        payload: {
-          name: extensionName,
-          state: ExtensionUpdateState.UPDATING,
-        },
-      });
-      expect(dispatch).toHaveBeenCalledWith({
-        type: 'SET_STATE',
-        payload: {
-          name: extensionName,
-          state: ExtensionUpdateState.UPDATED_NEEDS_RESTART,
-        },
-      });
-    });
-
-    it('should call setExtensionUpdateState with ERROR on failure', async () => {
-      const extensionName = 'test-extension';
-      const extensionDir = createExtension({
-        extensionsDir: userExtensionsDir,
-        name: extensionName,
-        version: '1.0.0',
-        installMetadata: {
-          source: 'https://some.git/repo',
-          type: 'git',
-        },
-      });
-
-      mockGit.clone.mockRejectedValue(new Error('Git clone failed'));
-      mockGit.getRemotes.mockResolvedValue([{ name: 'origin' }]);
-
-      const dispatch = vi.fn();
-      const extension = annotateActiveExtensions(
-        [
-          loadExtension({
-            extensionDir,
-            workspaceDir: tempWorkspaceDir,
-          })!,
-        ],
-        process.cwd(),
-        new ExtensionEnablementManager(ExtensionStorage.getUserExtensionsDir()),
-      )[0];
-      await expect(
-        updateExtension(
-          extension,
-          tempHomeDir,
-          async (_) => true,
-          ExtensionUpdateState.UPDATE_AVAILABLE,
-          dispatch,
-        ),
-      ).rejects.toThrow();
-
-      expect(dispatch).toHaveBeenCalledWith({
-        type: 'SET_STATE',
-        payload: {
-          name: extensionName,
-          state: ExtensionUpdateState.UPDATING,
-        },
-      });
-      expect(dispatch).toHaveBeenCalledWith({
-        type: 'SET_STATE',
-        payload: {
-          name: extensionName,
-          state: ExtensionUpdateState.ERROR,
-        },
-      });
-    });
-  });
-
-  describe('checkForAllExtensionUpdates', () => {
-    it('should return UpdateAvailable for a git extension with updates', async () => {
-      const extensionDir = createExtension({
-        extensionsDir: userExtensionsDir,
-        name: 'test-extension',
-        version: '1.0.0',
-        installMetadata: {
-          source: 'https://some.git/repo',
-          type: 'git',
-        },
-      });
-      const extension = annotateActiveExtensions(
-        [
-          loadExtension({
-            extensionDir,
-            workspaceDir: tempWorkspaceDir,
-          })!,
-        ],
-        process.cwd(),
-        new ExtensionEnablementManager(ExtensionStorage.getUserExtensionsDir()),
-      )[0];
-
-      mockGit.getRemotes.mockResolvedValue([
-        { name: 'origin', refs: { fetch: 'https://some.git/repo' } },
-      ]);
-      mockGit.listRemote.mockResolvedValue('remoteHash	HEAD');
-      mockGit.revparse.mockResolvedValue('localHash');
-
-      const dispatch = vi.fn();
-      await checkForAllExtensionUpdates([extension], dispatch);
-      expect(dispatch).toHaveBeenCalledWith({
-        type: 'SET_STATE',
-        payload: {
-          name: 'test-extension',
-          state: ExtensionUpdateState.UPDATE_AVAILABLE,
-        },
-      });
-    });
-
-    it('should return UpToDate for a git extension with no updates', async () => {
-      const extensionDir = createExtension({
-        extensionsDir: userExtensionsDir,
-        name: 'test-extension',
-        version: '1.0.0',
-        installMetadata: {
-          source: 'https://some.git/repo',
-          type: 'git',
-        },
-      });
-      const extension = annotateActiveExtensions(
-        [
-          loadExtension({
-            extensionDir,
-            workspaceDir: tempWorkspaceDir,
-          })!,
-        ],
-        process.cwd(),
-        new ExtensionEnablementManager(ExtensionStorage.getUserExtensionsDir()),
-      )[0];
-
-      mockGit.getRemotes.mockResolvedValue([
-        { name: 'origin', refs: { fetch: 'https://some.git/repo' } },
-      ]);
-      mockGit.listRemote.mockResolvedValue('sameHash	HEAD');
-      mockGit.revparse.mockResolvedValue('sameHash');
-
-      const dispatch = vi.fn();
-      await checkForAllExtensionUpdates([extension], dispatch);
-      expect(dispatch).toHaveBeenCalledWith({
-        type: 'SET_STATE',
-        payload: {
-          name: 'test-extension',
-          state: ExtensionUpdateState.UP_TO_DATE,
-        },
-      });
-    });
-
-    it('should return UpToDate for a local extension with no updates', async () => {
-      const localExtensionSourcePath = path.join(tempHomeDir, 'local-source');
-      const sourceExtensionDir = createExtension({
-        extensionsDir: localExtensionSourcePath,
-        name: 'my-local-ext',
-        version: '1.0.0',
-      });
-
-      const installedExtensionDir = createExtension({
-        extensionsDir: userExtensionsDir,
-        name: 'local-extension',
-        version: '1.0.0',
-        installMetadata: { source: sourceExtensionDir, type: 'local' },
-      });
-      const extension = annotateActiveExtensions(
-        [
-          loadExtension({
-            extensionDir: installedExtensionDir,
-            workspaceDir: tempWorkspaceDir,
-          })!,
-        ],
-        process.cwd(),
-        new ExtensionEnablementManager(ExtensionStorage.getUserExtensionsDir()),
-      )[0];
-      const dispatch = vi.fn();
-      await checkForAllExtensionUpdates([extension], dispatch);
-      expect(dispatch).toHaveBeenCalledWith({
-        type: 'SET_STATE',
-        payload: {
-          name: 'local-extension',
-          state: ExtensionUpdateState.UP_TO_DATE,
-        },
-      });
-    });
-
-    it('should return UpdateAvailable for a local extension with updates', async () => {
-      const localExtensionSourcePath = path.join(tempHomeDir, 'local-source');
-      const sourceExtensionDir = createExtension({
-        extensionsDir: localExtensionSourcePath,
-        name: 'my-local-ext',
-        version: '1.1.0',
-      });
-
-      const installedExtensionDir = createExtension({
-        extensionsDir: userExtensionsDir,
-        name: 'local-extension',
-        version: '1.0.0',
-        installMetadata: { source: sourceExtensionDir, type: 'local' },
-      });
-      const extension = annotateActiveExtensions(
-        [
-          loadExtension({
-            extensionDir: installedExtensionDir,
-            workspaceDir: tempWorkspaceDir,
-          })!,
-        ],
-        process.cwd(),
-        new ExtensionEnablementManager(ExtensionStorage.getUserExtensionsDir()),
-      )[0];
-      const dispatch = vi.fn();
-      await checkForAllExtensionUpdates([extension], dispatch);
-      expect(dispatch).toHaveBeenCalledWith({
-        type: 'SET_STATE',
-        payload: {
-          name: 'local-extension',
-          state: ExtensionUpdateState.UPDATE_AVAILABLE,
-        },
-      });
-    });
-
-    it('should return Error when git check fails', async () => {
-      const extensionDir = createExtension({
-        extensionsDir: userExtensionsDir,
-        name: 'error-extension',
-        version: '1.0.0',
-        installMetadata: {
-          source: 'https://some.git/repo',
-          type: 'git',
-        },
-      });
-      const extension = annotateActiveExtensions(
-        [
-          loadExtension({
-            extensionDir,
-            workspaceDir: tempWorkspaceDir,
-          })!,
-        ],
-        process.cwd(),
-        new ExtensionEnablementManager(ExtensionStorage.getUserExtensionsDir()),
-      )[0];
-
-      mockGit.getRemotes.mockRejectedValue(new Error('Git error'));
-
-      const dispatch = vi.fn();
-      await checkForAllExtensionUpdates([extension], dispatch);
-      expect(dispatch).toHaveBeenCalledWith({
-        type: 'SET_STATE',
-        payload: {
-          name: 'error-extension',
-          state: ExtensionUpdateState.ERROR,
-        },
-      });
-    });
-  });
-});

packages/cli/src/config/extensions/update.ts

@@ -1,182 +0,0 @@
-/**
- * @license
- * Copyright 2025 Google LLC
- * SPDX-License-Identifier: Apache-2.0
- */
-
-import {
-  type ExtensionUpdateAction,
-  ExtensionUpdateState,
-  type ExtensionUpdateStatus,
-} from '../../ui/state/extensions.js';
-import {
-  copyExtension,
-  installExtension,
-  uninstallExtension,
-  loadExtension,
-  loadInstallMetadata,
-  ExtensionStorage,
-  loadExtensionConfig,
-} from '../extension.js';
-import { checkForExtensionUpdate } from './github.js';
-import type { GeminiCLIExtension } from '@qwen-code/qwen-code-core';
-import * as fs from 'node:fs';
-import { getErrorMessage } from '../../utils/errors.js';
-
-export interface ExtensionUpdateInfo {
-  name: string;
-  originalVersion: string;
-  updatedVersion: string;
-}
-
-export async function updateExtension(
-  extension: GeminiCLIExtension,
-  cwd: string = process.cwd(),
-  requestConsent: (consent: string) => Promise<boolean>,
-  currentState: ExtensionUpdateState,
-  dispatchExtensionStateUpdate: (action: ExtensionUpdateAction) => void,
-): Promise<ExtensionUpdateInfo | undefined> {
-  if (currentState === ExtensionUpdateState.UPDATING) {
-    return undefined;
-  }
-  dispatchExtensionStateUpdate({
-    type: 'SET_STATE',
-    payload: { name: extension.name, state: ExtensionUpdateState.UPDATING },
-  });
-  const installMetadata = loadInstallMetadata(extension.path);
-
-  if (!installMetadata?.type) {
-    dispatchExtensionStateUpdate({
-      type: 'SET_STATE',
-      payload: { name: extension.name, state: ExtensionUpdateState.ERROR },
-    });
-    throw new Error(
-      `Extension ${extension.name} cannot be updated, type is unknown.`,
-    );
-  }
-  if (installMetadata?.type === 'link') {
-    dispatchExtensionStateUpdate({
-      type: 'SET_STATE',
-      payload: { name: extension.name, state: ExtensionUpdateState.UP_TO_DATE },
-    });
-    throw new Error(`Extension is linked so does not need to be updated`);
-  }
-  const originalVersion = extension.version;
-
-  const tempDir = await ExtensionStorage.createTmpDir();
-  try {
-    await copyExtension(extension.path, tempDir);
-    const previousExtensionConfig = await loadExtensionConfig({
-      extensionDir: extension.path,
-      workspaceDir: cwd,
-    });
-    await uninstallExtension(extension.name, cwd);
-    await installExtension(
-      installMetadata,
-      requestConsent,
-      cwd,
-      previousExtensionConfig,
-    );
-
-    const updatedExtensionStorage = new ExtensionStorage(extension.name);
-    const updatedExtension = loadExtension({
-      extensionDir: updatedExtensionStorage.getExtensionDir(),
-      workspaceDir: cwd,
-    });
-    if (!updatedExtension) {
-      dispatchExtensionStateUpdate({
-        type: 'SET_STATE',
-        payload: { name: extension.name, state: ExtensionUpdateState.ERROR },
-      });
-      throw new Error('Updated extension not found after installation.');
-    }
-    const updatedVersion = updatedExtension.config.version;
-    dispatchExtensionStateUpdate({
-      type: 'SET_STATE',
-      payload: {
-        name: extension.name,
-        state: ExtensionUpdateState.UPDATED_NEEDS_RESTART,
-      },
-    });
-    return {
-      name: extension.name,
-      originalVersion,
-      updatedVersion,
-    };
-  } catch (e) {
-    console.error(
-      `Error updating extension, rolling back. ${getErrorMessage(e)}`,
-    );
-    dispatchExtensionStateUpdate({
-      type: 'SET_STATE',
-      payload: { name: extension.name, state: ExtensionUpdateState.ERROR },
-    });
-    await copyExtension(tempDir, extension.path);
-    throw e;
-  } finally {
-    await fs.promises.rm(tempDir, { recursive: true, force: true });
-  }
-}
-
-export async function updateAllUpdatableExtensions(
-  cwd: string = process.cwd(),
-  requestConsent: (consent: string) => Promise<boolean>,
-  extensions: GeminiCLIExtension[],
-  extensionsState: Map<string, ExtensionUpdateStatus>,
-  dispatch: (action: ExtensionUpdateAction) => void,
-): Promise<ExtensionUpdateInfo[]> {
-  return (
-    await Promise.all(
-      extensions
-        .filter(
-          (extension) =>
-            extensionsState.get(extension.name)?.status ===
-            ExtensionUpdateState.UPDATE_AVAILABLE,
-        )
-        .map((extension) =>
-          updateExtension(
-            extension,
-            cwd,
-            requestConsent,
-            extensionsState.get(extension.name)!.status,
-            dispatch,
-          ),
-        ),
-    )
-  ).filter((updateInfo) => !!updateInfo);
-}
-
-export interface ExtensionUpdateCheckResult {
-  state: ExtensionUpdateState;
-  error?: string;
-}
-
-export async function checkForAllExtensionUpdates(
-  extensions: GeminiCLIExtension[],
-  dispatch: (action: ExtensionUpdateAction) => void,
-): Promise<void> {
-  dispatch({ type: 'BATCH_CHECK_START' });
-  const promises: Array<Promise<void>> = [];
-  for (const extension of extensions) {
-    if (!extension.installMetadata) {
-      dispatch({
-        type: 'SET_STATE',
-        payload: {
-          name: extension.name,
-          state: ExtensionUpdateState.NOT_UPDATABLE,
-        },
-      });
-      continue;
-    }
-    promises.push(
-      checkForExtensionUpdate(extension, (updatedState) => {
-        dispatch({
-          type: 'SET_STATE',
-          payload: { name: extension.name, state: updatedState },
-        });
-      }),
-    );
-  }
-  await Promise.all(promises);
-  dispatch({ type: 'BATCH_CHECK_END' });
-}

packages/cli/src/config/settings.test.ts

@@ -51,7 +51,6 @@ import {
 import * as fs from 'node:fs'; // fs will be mocked separately
 import stripJsonComments from 'strip-json-comments'; // Will be mocked separately
 import { isWorkspaceTrusted } from './trustedFolders.js';
-import { disableExtension } from './extension.js';
 
 // These imports will get the versions from the vi.mock('./settings.js', ...) factory.
 import {
@@ -64,8 +63,6 @@ import {
   needsMigration,
   type Settings,
   loadEnvironment,
-  migrateDeprecatedSettings,
-  SettingScope,
   SETTINGS_VERSION,
   SETTINGS_VERSION_KEY,
 } from './settings.js';
@@ -2649,122 +2646,4 @@ describe('Settings Loading and Merging', () => {
       });
     });
   });
-
-  describe('migrateDeprecatedSettings', () => {
-    let mockFsExistsSync: Mocked<typeof fs.existsSync>;
-    let mockFsReadFileSync: Mocked<typeof fs.readFileSync>;
-    let mockDisableExtension: Mocked<typeof disableExtension>;
-
-    beforeEach(() => {
-      vi.resetAllMocks();
-
-      mockFsExistsSync = vi.mocked(fs.existsSync);
-      mockFsReadFileSync = vi.mocked(fs.readFileSync);
-      mockDisableExtension = vi.mocked(disableExtension);
-
-      (mockFsExistsSync as Mock).mockReturnValue(true);
-      vi.mocked(isWorkspaceTrusted).mockReturnValue(true);
-    });
-
-    afterEach(() => {
-      vi.restoreAllMocks();
-    });
-
-    it('should migrate disabled extensions from user and workspace settings', () => {
-      const userSettingsContent = {
-        extensions: {
-          disabled: ['user-ext-1', 'shared-ext'],
-        },
-      };
-      const workspaceSettingsContent = {
-        extensions: {
-          disabled: ['workspace-ext-1', 'shared-ext'],
-        },
-      };
-
-      (mockFsReadFileSync as Mock).mockImplementation(
-        (p: fs.PathOrFileDescriptor) => {
-          if (p === USER_SETTINGS_PATH)
-            return JSON.stringify(userSettingsContent);
-          if (p === MOCK_WORKSPACE_SETTINGS_PATH)
-            return JSON.stringify(workspaceSettingsContent);
-          return '{}';
-        },
-      );
-
-      const loadedSettings = loadSettings(MOCK_WORKSPACE_DIR);
-      const setValueSpy = vi.spyOn(loadedSettings, 'setValue');
-
-      migrateDeprecatedSettings(loadedSettings, MOCK_WORKSPACE_DIR);
-
-      // Check user settings migration
-      expect(mockDisableExtension).toHaveBeenCalledWith(
-        'user-ext-1',
-        SettingScope.User,
-        MOCK_WORKSPACE_DIR,
-      );
-      expect(mockDisableExtension).toHaveBeenCalledWith(
-        'shared-ext',
-        SettingScope.User,
-        MOCK_WORKSPACE_DIR,
-      );
-
-      // Check workspace settings migration
-      expect(mockDisableExtension).toHaveBeenCalledWith(
-        'workspace-ext-1',
-        SettingScope.Workspace,
-        MOCK_WORKSPACE_DIR,
-      );
-      expect(mockDisableExtension).toHaveBeenCalledWith(
-        'shared-ext',
-        SettingScope.Workspace,
-        MOCK_WORKSPACE_DIR,
-      );
-
-      // Check that setValue was called to remove the deprecated setting
-      expect(setValueSpy).toHaveBeenCalledWith(
-        SettingScope.User,
-        'extensions',
-        {
-          disabled: undefined,
-        },
-      );
-      expect(setValueSpy).toHaveBeenCalledWith(
-        SettingScope.Workspace,
-        'extensions',
-        {
-          disabled: undefined,
-        },
-      );
-    });
-
-    it('should not do anything if there are no deprecated settings', () => {
-      const userSettingsContent = {
-        extensions: {
-          enabled: ['user-ext-1'],
-        },
-      };
-      const workspaceSettingsContent = {
-        someOtherSetting: 'value',
-      };
-
-      (mockFsReadFileSync as Mock).mockImplementation(
-        (p: fs.PathOrFileDescriptor) => {
-          if (p === USER_SETTINGS_PATH)
-            return JSON.stringify(userSettingsContent);
-          if (p === MOCK_WORKSPACE_SETTINGS_PATH)
-            return JSON.stringify(workspaceSettingsContent);
-          return '{}';
-        },
-      );
-
-      const loadedSettings = loadSettings(MOCK_WORKSPACE_DIR);
-      const setValueSpy = vi.spyOn(loadedSettings, 'setValue');
-
-      migrateDeprecatedSettings(loadedSettings, MOCK_WORKSPACE_DIR);
-
-      expect(mockDisableExtension).not.toHaveBeenCalled();
-      expect(setValueSpy).not.toHaveBeenCalled();
-    });
-  });
 });

packages/cli/src/config/settings.ts

@@ -30,7 +30,6 @@ import {
 import { resolveEnvVarsInObject } from '../utils/envVarResolver.js';
 import { customDeepMerge, type MergeableObject } from '../utils/deepMerge.js';
 import { updateSettingsFilePreservingFormat } from '../utils/commentJson.js';
-import { disableExtension } from './extension.js';
 
 function getMergeStrategyForPath(path: string[]): MergeStrategy | undefined {
   let current: SettingDefinition | undefined = undefined;
@@ -81,7 +80,6 @@ const MIGRATION_MAP: Record<string, string> = {
   excludeTools: 'tools.exclude',
   excludeMCPServers: 'mcp.excluded',
   excludedProjectEnvVars: 'advanced.excludedEnvVars',
-  extensionManagement: 'experimental.extensionManagement',
   extensions: 'extensions',
   fileFiltering: 'context.fileFiltering',
   folderTrustFeature: 'security.folderTrust.featureEnabled',
@@ -812,31 +810,6 @@ export function loadSettings(
   );
 }
 
-export function migrateDeprecatedSettings(
-  loadedSettings: LoadedSettings,
-  workspaceDir: string = process.cwd(),
-): void {
-  const processScope = (scope: SettingScope) => {
-    const settings = loadedSettings.forScope(scope).settings;
-    if (settings.extensions?.disabled) {
-      console.log(
-        `Migrating deprecated extensions.disabled settings from ${scope} settings...`,
-      );
-      for (const extension of settings.extensions.disabled ?? []) {
-        disableExtension(extension, scope, workspaceDir);
-      }
-
-      const newExtensionsValue = { ...settings.extensions };
-      newExtensionsValue.disabled = undefined;
-
-      loadedSettings.setValue(scope, 'extensions', newExtensionsValue);
-    }
-  };
-
-  processScope(SettingScope.User);
-  processScope(SettingScope.Workspace);
-}
-
 export function saveSettings(settingsFile: SettingsFile): void {
   try {
     // Ensure the directory exists

packages/cli/src/config/settingsSchema.ts

@@ -1192,15 +1192,6 @@ const SETTINGS_SCHEMA = {
     description: 'Setting to enable experimental features',
     showInDialog: false,
     properties: {
-      extensionManagement: {
-        type: 'boolean',
-        label: 'Extension Management',
-        category: 'Experimental',
-        requiresRestart: true,
-        default: true,
-        description: 'Enable extension management features.',
-        showInDialog: false,
-      },
       visionModelPreview: {
         type: 'boolean',
         label: 'Vision Model Preview',
@@ -1223,39 +1214,6 @@ const SETTINGS_SCHEMA = {
       },
     },
   },
-
-  extensions: {
-    type: 'object',
-    label: 'Extensions',
-    category: 'Extensions',
-    requiresRestart: true,
-    default: {},
-    description: 'Settings for extensions.',
-    showInDialog: false,
-    properties: {
-      disabled: {
-        type: 'array',
-        label: 'Disabled Extensions',
-        category: 'Extensions',
-        requiresRestart: true,
-        default: [] as string[],
-        description: 'List of disabled extensions.',
-        showInDialog: false,
-        mergeStrategy: MergeStrategy.UNION,
-      },
-      workspacesWithMigrationNudge: {
-        type: 'array',
-        label: 'Workspaces with Migration Nudge',
-        category: 'Extensions',
-        requiresRestart: false,
-        default: [] as string[],
-        description:
-          'List of workspaces for which the migration nudge has been shown.',
-        showInDialog: false,
-        mergeStrategy: MergeStrategy.UNION,
-      },
-    },
-  },
 } as const satisfies SettingsSchema;
 
 export type SettingsSchemaType = typeof SETTINGS_SCHEMA;

packages/cli/src/gemini.test.tsx

@@ -262,7 +262,6 @@ describe('gemini.tsx main function', () => {
     );
     const { loadSettings } = await import('./config/settings.js');
     const cleanupModule = await import('./utils/cleanup.js');
-    const extensionModule = await import('./config/extension.js');
     const validatorModule = await import('./validateNonInterActiveAuth.js');
     const streamJsonModule = await import('./nonInteractive/session.js');
     const initializerModule = await import('./core/initializer.js');
@@ -275,11 +274,6 @@ describe('gemini.tsx main function', () => {
     vi.mocked(cleanupModule.registerCleanup).mockImplementation(() => {});
     const runExitCleanupMock = vi.mocked(cleanupModule.runExitCleanup);
     runExitCleanupMock.mockResolvedValue(undefined);
-    vi.spyOn(extensionModule, 'loadExtensions').mockReturnValue([]);
-    vi.spyOn(
-      extensionModule.ExtensionStorage,
-      'getUserExtensionsDir',
-    ).mockReturnValue('/tmp/extensions');
     vi.spyOn(initializerModule, 'initializeApp').mockResolvedValue({
       authError: null,
       themeError: null,

packages/cli/src/gemini.tsx

@@ -15,9 +15,8 @@ import React from 'react';
 import { validateAuthMethod } from './config/auth.js';
 import * as cliConfig from './config/config.js';
 import { loadCliConfig, parseArguments } from './config/config.js';
-import { ExtensionStorage, loadExtensions } from './config/extension.js';
 import type { DnsResolutionOrder, LoadedSettings } from './config/settings.js';
-import { loadSettings, migrateDeprecatedSettings } from './config/settings.js';
+import { loadSettings } from './config/settings.js';
 import {
   initializeApp,
   type InitializationResult,
@@ -103,7 +102,6 @@ function getNodeMemoryArgs(isDebugMode: boolean): string[] {
   return [];
 }
 
-import { ExtensionEnablementManager } from './config/extensions/extensionEnablement.js';
 import { loadSandboxConfig } from './config/sandboxConfig.js';
 import { runAcpAgent } from './acp-integration/acpAgent.js';
 
@@ -200,10 +198,9 @@ export async function startInteractiveUI(
 export async function main() {
   setupUnhandledRejectionHandler();
   const settings = loadSettings();
-  migrateDeprecatedSettings(settings);
   await cleanupCheckpoints();
 
-  let argv = await parseArguments(settings.merged);
+  let argv = await parseArguments();
 
   // Check for invalid input combinations early to prevent crashes
   if (argv.promptInteractive && !process.stdin.isTTY) {
@@ -245,9 +242,9 @@ export async function main() {
     if (sandboxConfig) {
       const partialConfig = await loadCliConfig(
         settings.merged,
-        [],
-        new ExtensionEnablementManager(ExtensionStorage.getUserExtensionsDir()),
         argv,
+        undefined,
+        [],
       );
 
       if (
@@ -331,25 +328,21 @@ export async function main() {
   // to run Gemini CLI. It is now safe to perform expensive initialization that
   // may have side effects.
   {
-    const extensionEnablementManager = new ExtensionEnablementManager(
-      ExtensionStorage.getUserExtensionsDir(),
-      argv.extensions,
-    );
-    const extensions = loadExtensions(extensionEnablementManager);
     const config = await loadCliConfig(
       settings.merged,
-      extensions,
-      extensionEnablementManager,
       argv,
+      process.cwd(),
+      argv.extensions,
     );
 
-    if (config.getListExtensions()) {
-      console.log('Installed extensions:');
-      for (const extension of extensions) {
-        console.log(`- ${extension.config.name}`);
-      }
-      process.exit(0);
-    }
+    // FIXME: list extensions after the config initialize
+    // if (config.getListExtensions()) {
+    //   console.log('Installed extensions:');
+    //   for (const extension of extensions) {
+    //     console.log(`- ${extension.config.name}`);
+    //   }
+    //   process.exit(0);
+    // }
 
     // Setup unified ConsolePatcher based on interactive mode
     const isInteractive = config.isInteractive();
@@ -395,7 +388,7 @@ export async function main() {
     }
 
     if (config.getExperimentalZedIntegration()) {
-      return runAcpAgent(config, settings, extensions, argv);
+      return runAcpAgent(config, settings, argv);
     }
 
     let input = config.getQuestion();

packages/cli/src/services/FileCommandLoader-extension.test.ts

@@ -0,0 +1,327 @@
+/**
+ * @license
+ * Copyright 2025 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+import { describe, it, expect, beforeEach, afterEach } from 'vitest';
+import * as fs from 'node:fs';
+import * as path from 'node:path';
+import * as os from 'node:os';
+import { FileCommandLoader } from './FileCommandLoader.js';
+import type { Config } from '@qwen-code/qwen-code-core';
+import { Storage } from '@qwen-code/qwen-code-core';
+
+describe('FileCommandLoader - Extension Commands Support', () => {
+  let tempDir: string;
+  let mockConfig: Partial<Config>;
+
+  beforeEach(async () => {
+    tempDir = await fs.promises.mkdtemp(
+      path.join(os.tmpdir(), 'file-command-loader-ext-test-'),
+    );
+
+    mockConfig = {
+      getFolderTrustFeature: () => false,
+      getFolderTrust: () => true,
+      getProjectRoot: () => tempDir,
+      storage: new Storage(tempDir),
+      getExtensions: () => [],
+    };
+  });
+
+  afterEach(async () => {
+    await fs.promises.rm(tempDir, { recursive: true, force: true });
+  });
+
+  it('should load commands from extension with config.commands path', async () => {
+    // Setup extension structure
+    const extensionDir = path.join(tempDir, '.qwen', 'extensions', 'test-ext');
+    const customCommandsDir = path.join(extensionDir, 'custom-cmds');
+    await fs.promises.mkdir(customCommandsDir, { recursive: true });
+
+    // Create extension config with custom commands path
+    const extensionConfig = {
+      name: 'test-ext',
+      version: '1.0.0',
+      commands: 'custom-cmds',
+    };
+    await fs.promises.writeFile(
+      path.join(extensionDir, 'qwen-extension.json'),
+      JSON.stringify(extensionConfig),
+    );
+
+    // Create a test command in custom directory
+    const commandContent =
+      '---\ndescription: Test command from extension\n---\nDo something';
+    await fs.promises.writeFile(
+      path.join(customCommandsDir, 'test.md'),
+      commandContent,
+    );
+
+    // Mock config to return the extension
+    mockConfig.getExtensions = () => [
+      {
+        id: 'test-ext',
+        config: extensionConfig,
+        name: 'test-ext',
+        version: '1.0.0',
+        isActive: true,
+        path: extensionDir,
+        contextFiles: [],
+      },
+    ];
+
+    const loader = new FileCommandLoader(mockConfig as Config);
+    const commands = await loader.loadCommands(new AbortController().signal);
+
+    expect(commands).toHaveLength(1);
+    expect(commands[0].name).toBe('test-ext:test');
+    expect(commands[0].description).toBe(
+      '[test-ext] Test command from extension',
+    );
+  });
+
+  it('should load commands from extension with multiple commands paths', async () => {
+    // Setup extension structure
+    const extensionDir = path.join(tempDir, '.qwen', 'extensions', 'multi-ext');
+    const cmdsDir1 = path.join(extensionDir, 'commands1');
+    const cmdsDir2 = path.join(extensionDir, 'commands2');
+    await fs.promises.mkdir(cmdsDir1, { recursive: true });
+    await fs.promises.mkdir(cmdsDir2, { recursive: true });
+
+    // Create extension config with multiple commands paths
+    const extensionConfig = {
+      name: 'multi-ext',
+      version: '1.0.0',
+      commands: ['commands1', 'commands2'],
+    };
+    await fs.promises.writeFile(
+      path.join(extensionDir, 'qwen-extension.json'),
+      JSON.stringify(extensionConfig),
+    );
+
+    // Create test commands in both directories
+    await fs.promises.writeFile(
+      path.join(cmdsDir1, 'cmd1.md'),
+      '---\n---\nCommand 1',
+    );
+    await fs.promises.writeFile(
+      path.join(cmdsDir2, 'cmd2.md'),
+      '---\n---\nCommand 2',
+    );
+
+    // Mock config to return the extension
+    mockConfig.getExtensions = () => [
+      {
+        id: 'multi-ext',
+        config: extensionConfig,
+        contextFiles: [],
+        name: 'multi-ext',
+        version: '1.0.0',
+        isActive: true,
+        path: extensionDir,
+      },
+    ];
+
+    const loader = new FileCommandLoader(mockConfig as Config);
+    const commands = await loader.loadCommands(new AbortController().signal);
+
+    expect(commands).toHaveLength(2);
+    const commandNames = commands.map((c) => c.name).sort();
+    expect(commandNames).toEqual(['multi-ext:cmd1', 'multi-ext:cmd2']);
+  });
+
+  it('should fallback to default "commands" directory when config.commands not specified', async () => {
+    // Setup extension structure with default commands directory
+    const extensionDir = path.join(
+      tempDir,
+      '.qwen',
+      'extensions',
+      'default-ext',
+    );
+    const defaultCommandsDir = path.join(extensionDir, 'commands');
+    await fs.promises.mkdir(defaultCommandsDir, { recursive: true });
+
+    // Create extension config without commands field
+    const extensionConfig = {
+      name: 'default-ext',
+      version: '1.0.0',
+    };
+    await fs.promises.writeFile(
+      path.join(extensionDir, 'qwen-extension.json'),
+      JSON.stringify(extensionConfig),
+    );
+
+    // Create a test command in default directory
+    await fs.promises.writeFile(
+      path.join(defaultCommandsDir, 'default.md'),
+      '---\n---\nDefault command',
+    );
+
+    // Mock config to return the extension
+    mockConfig.getExtensions = () => [
+      {
+        id: 'default-ext',
+        config: extensionConfig,
+        contextFiles: [],
+        name: 'default-ext',
+        version: '1.0.0',
+        isActive: true,
+        path: extensionDir,
+      },
+    ];
+
+    const loader = new FileCommandLoader(mockConfig as Config);
+    const commands = await loader.loadCommands(new AbortController().signal);
+
+    expect(commands).toHaveLength(1);
+    expect(commands[0].name).toBe('default-ext:default');
+  });
+
+  it('should handle extension without commands directory gracefully', async () => {
+    // Setup extension structure without commands directory
+    const extensionDir = path.join(
+      tempDir,
+      '.qwen',
+      'extensions',
+      'no-cmds-ext',
+    );
+    await fs.promises.mkdir(extensionDir, { recursive: true });
+
+    // Create extension config
+    const extensionConfig = {
+      name: 'no-cmds-ext',
+      version: '1.0.0',
+    };
+    await fs.promises.writeFile(
+      path.join(extensionDir, 'qwen-extension.json'),
+      JSON.stringify(extensionConfig),
+    );
+
+    // Mock config to return the extension
+    mockConfig.getExtensions = () => [
+      {
+        id: 'no-cmds-ext',
+        config: extensionConfig,
+        contextFiles: [],
+        name: 'no-cmds-ext',
+        version: '1.0.0',
+        isActive: true,
+        path: extensionDir,
+      },
+    ];
+
+    const loader = new FileCommandLoader(mockConfig as Config);
+    const commands = await loader.loadCommands(new AbortController().signal);
+
+    // Should not throw and return empty array
+    expect(commands).toHaveLength(0);
+  });
+
+  it('should prefix extension commands with extension name', async () => {
+    // Setup extension
+    const extensionDir = path.join(
+      tempDir,
+      '.qwen',
+      'extensions',
+      'prefix-ext',
+    );
+    const commandsDir = path.join(extensionDir, 'commands');
+    await fs.promises.mkdir(commandsDir, { recursive: true });
+
+    const extensionConfig = {
+      name: 'prefix-ext',
+      version: '1.0.0',
+    };
+    await fs.promises.writeFile(
+      path.join(extensionDir, 'qwen-extension.json'),
+      JSON.stringify(extensionConfig),
+    );
+
+    await fs.promises.writeFile(
+      path.join(commandsDir, 'mycommand.md'),
+      '---\n---\nMy command',
+    );
+
+    mockConfig.getExtensions = () => [
+      {
+        id: 'prefix-ext',
+        config: extensionConfig,
+        contextFiles: [],
+        name: 'prefix-ext',
+        version: '1.0.0',
+        isActive: true,
+        path: extensionDir,
+      },
+    ];
+
+    const loader = new FileCommandLoader(mockConfig as Config);
+    const commands = await loader.loadCommands(new AbortController().signal);
+
+    expect(commands).toHaveLength(1);
+    expect(commands[0].name).toBe('prefix-ext:mycommand');
+  });
+
+  it('should load commands from multiple extensions in alphabetical order', async () => {
+    // Setup two extensions
+    const ext1Dir = path.join(tempDir, '.qwen', 'extensions', 'ext-b');
+    const ext2Dir = path.join(tempDir, '.qwen', 'extensions', 'ext-a');
+
+    await fs.promises.mkdir(path.join(ext1Dir, 'commands'), {
+      recursive: true,
+    });
+    await fs.promises.mkdir(path.join(ext2Dir, 'commands'), {
+      recursive: true,
+    });
+
+    // Extension B
+    await fs.promises.writeFile(
+      path.join(ext1Dir, 'qwen-extension.json'),
+      JSON.stringify({ name: 'ext-b', version: '1.0.0' }),
+    );
+    await fs.promises.writeFile(
+      path.join(ext1Dir, 'commands', 'cmd.md'),
+      '---\n---\nCommand B',
+    );
+
+    // Extension A
+    await fs.promises.writeFile(
+      path.join(ext2Dir, 'qwen-extension.json'),
+      JSON.stringify({ name: 'ext-a', version: '1.0.0' }),
+    );
+    await fs.promises.writeFile(
+      path.join(ext2Dir, 'commands', 'cmd.md'),
+      '---\n---\nCommand A',
+    );
+
+    mockConfig.getExtensions = () => [
+      {
+        id: 'ext-b',
+        config: { name: 'ext-b', version: '1.0.0' },
+        contextFiles: [],
+        name: 'ext-b',
+        version: '1.0.0',
+        isActive: true,
+        path: ext1Dir,
+      },
+      {
+        id: 'ext-a',
+        config: { name: 'ext-a', version: '1.0.0' },
+        contextFiles: [],
+        name: 'ext-a',
+        version: '1.0.0',
+        isActive: true,
+        path: ext2Dir,
+      },
+    ];
+
+    const loader = new FileCommandLoader(mockConfig as Config);
+    const commands = await loader.loadCommands(new AbortController().signal);
+
+    expect(commands).toHaveLength(2);
+    // Extensions are sorted alphabetically, so ext-a comes before ext-b
+    expect(commands[0].name).toBe('ext-a:cmd');
+    expect(commands[1].name).toBe('ext-b:cmd');
+  });
+});

packages/cli/src/services/FileCommandLoader-markdown.test.ts

@@ -0,0 +1,117 @@
+/**
+ * @license
+ * Copyright 2025 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+import { describe, it, expect, beforeAll, afterAll } from 'vitest';
+import { promises as fs } from 'node:fs';
+import path from 'node:path';
+import os from 'node:os';
+import { FileCommandLoader } from './FileCommandLoader.js';
+
+describe('FileCommandLoader - Markdown support', () => {
+  let tempDir: string;
+
+  beforeAll(async () => {
+    // Create a temporary directory for test commands
+    tempDir = await fs.mkdtemp(path.join(os.tmpdir(), 'qwen-md-test-'));
+  });
+
+  afterAll(async () => {
+    // Clean up
+    await fs.rm(tempDir, { recursive: true, force: true });
+  });
+
+  it('should load markdown commands with frontmatter', async () => {
+    // Create a test markdown command file
+    const mdContent = `---
+description: Test markdown command
+---
+
+This is a test prompt from markdown.`;
+
+    const commandPath = path.join(tempDir, 'test-command.md');
+    await fs.writeFile(commandPath, mdContent, 'utf-8');
+
+    // Create loader with temp dir as command source
+    const loader = new FileCommandLoader(null);
+
+    // Mock the getCommandDirectories to return our temp dir
+    const originalMethod = loader['getCommandDirectories'];
+    loader['getCommandDirectories'] = () => [{ path: tempDir }];
+
+    try {
+      const commands = await loader.loadCommands(new AbortController().signal);
+
+      expect(commands).toHaveLength(1);
+      expect(commands[0].name).toBe('test-command');
+      expect(commands[0].description).toBe('Test markdown command');
+    } finally {
+      // Restore original method
+      loader['getCommandDirectories'] = originalMethod;
+    }
+  });
+
+  it('should load markdown commands without frontmatter', async () => {
+    // Create a test markdown command file without frontmatter
+    const mdContent = 'This is a simple prompt without frontmatter.';
+
+    const commandPath = path.join(tempDir, 'simple-command.md');
+    await fs.writeFile(commandPath, mdContent, 'utf-8');
+
+    const loader = new FileCommandLoader(null);
+    const originalMethod = loader['getCommandDirectories'];
+    loader['getCommandDirectories'] = () => [{ path: tempDir }];
+
+    try {
+      const commands = await loader.loadCommands(new AbortController().signal);
+
+      const simpleCommand = commands.find(
+        (cmd) => cmd.name === 'simple-command',
+      );
+      expect(simpleCommand).toBeDefined();
+      expect(simpleCommand?.description).toContain('Custom command from');
+    } finally {
+      loader['getCommandDirectories'] = originalMethod;
+    }
+  });
+
+  it('should load both toml and markdown commands', async () => {
+    // Create both TOML and Markdown files
+    const tomlContent = `prompt = "TOML prompt"
+description = "TOML command"`;
+
+    const mdContent = `---
+description: Markdown command
+---
+
+Markdown prompt`;
+
+    await fs.writeFile(
+      path.join(tempDir, 'toml-cmd.toml'),
+      tomlContent,
+      'utf-8',
+    );
+    await fs.writeFile(path.join(tempDir, 'md-cmd.md'), mdContent, 'utf-8');
+
+    const loader = new FileCommandLoader(null);
+    const originalMethod = loader['getCommandDirectories'];
+    loader['getCommandDirectories'] = () => [{ path: tempDir }];
+
+    try {
+      const commands = await loader.loadCommands(new AbortController().signal);
+
+      const tomlCommand = commands.find((cmd) => cmd.name === 'toml-cmd');
+      const mdCommand = commands.find((cmd) => cmd.name === 'md-cmd');
+
+      expect(tomlCommand).toBeDefined();
+      expect(tomlCommand?.description).toBe('TOML command');
+
+      expect(mdCommand).toBeDefined();
+      expect(mdCommand?.description).toBe('Markdown command');
+    } finally {
+      loader['getCommandDirectories'] = originalMethod;
+    }
+  });
+});

packages/cli/src/services/FileCommandLoader.test.ts

@@ -568,9 +568,9 @@ describe('FileCommandLoader', () => {
 
       expect(commands).toHaveLength(3);
       const commandNames = commands.map((cmd) => cmd.name);
-      expect(commandNames).toEqual(['user', 'project', 'ext']);
+      expect(commandNames).toEqual(['user', 'project', 'test-ext:ext']);
 
-      const extCommand = commands.find((cmd) => cmd.name === 'ext');
+      const extCommand = commands.find((cmd) => cmd.name === 'test-ext:ext');
       expect(extCommand?.extensionName).toBe('test-ext');
       expect(extCommand?.description).toMatch(/^\[test-ext\]/);
     });
@@ -656,14 +656,14 @@ describe('FileCommandLoader', () => {
         expect(result1.content).toEqual([{ text: 'Project deploy command' }]);
       }
 
-      expect(commands[2].name).toBe('deploy');
+      expect(commands[2].name).toBe('test-ext:deploy');
       expect(commands[2].extensionName).toBe('test-ext');
       expect(commands[2].description).toMatch(/^\[test-ext\]/);
       const result2 = await commands[2].action?.(
         createMockCommandContext({
           invocation: {
-            raw: '/deploy',
-            name: 'deploy',
+            raw: '/test-ext:deploy',
+            name: 'test-ext:deploy',
             args: '',
           },
         }),
@@ -729,7 +729,7 @@ describe('FileCommandLoader', () => {
       const commands = await loader.loadCommands(signal);
 
       expect(commands).toHaveLength(1);
-      expect(commands[0].name).toBe('active');
+      expect(commands[0].name).toBe('active-ext:active');
       expect(commands[0].extensionName).toBe('active-ext');
       expect(commands[0].description).toMatch(/^\[active-ext\]/);
     });
@@ -803,17 +803,17 @@ describe('FileCommandLoader', () => {
       expect(commands).toHaveLength(3);
 
       const commandNames = commands.map((cmd) => cmd.name).sort();
-      expect(commandNames).toEqual(['b:c', 'b:d:e', 'simple']);
+      expect(commandNames).toEqual(['a:b:c', 'a:b:d:e', 'a:simple']);
 
-      const nestedCmd = commands.find((cmd) => cmd.name === 'b:c');
+      const nestedCmd = commands.find((cmd) => cmd.name === 'a:b:c');
       expect(nestedCmd?.extensionName).toBe('a');
       expect(nestedCmd?.description).toMatch(/^\[a\]/);
       expect(nestedCmd).toBeDefined();
       const result = await nestedCmd!.action?.(
         createMockCommandContext({
           invocation: {
-            raw: '/b:c',
-            name: 'b:c',
+            raw: '/a:b:c',
+            name: 'a:b:c',
             args: '',
           },
         }),

packages/cli/src/services/FileCommandLoader.ts

@@ -5,34 +5,23 @@
  */
 
 import { promises as fs } from 'node:fs';
+import * as fsSync from 'node:fs';
 import path from 'node:path';
 import toml from '@iarna/toml';
 import { glob } from 'glob';
 import { z } from 'zod';
 import type { Config } from '@qwen-code/qwen-code-core';
-import { Storage } from '@qwen-code/qwen-code-core';
+import { EXTENSIONS_CONFIG_FILENAME, Storage } from '@qwen-code/qwen-code-core';
 import type { ICommandLoader } from './types.js';
-import type {
-  CommandContext,
-  SlashCommand,
-  SlashCommandActionReturn,
-} from '../ui/commands/types.js';
-import { CommandKind } from '../ui/commands/types.js';
-import { DefaultArgumentProcessor } from './prompt-processors/argumentProcessor.js';
-import type {
-  IPromptProcessor,
-  PromptPipelineContent,
-} from './prompt-processors/types.js';
 import {
-  SHORTHAND_ARGS_PLACEHOLDER,
-  SHELL_INJECTION_TRIGGER,
-  AT_FILE_INJECTION_TRIGGER,
-} from './prompt-processors/types.js';
+  parseMarkdownCommand,
+  MarkdownCommandDefSchema,
+} from './markdown-command-parser.js';
 import {
-  ConfirmationRequiredError,
-  ShellProcessor,
-} from './prompt-processors/shellProcessor.js';
-import { AtFileProcessor } from './prompt-processors/atFileProcessor.js';
+  createSlashCommandFromDefinition,
+  type CommandDefinition,
+} from './command-factory.js';
+import type { SlashCommand } from '../ui/commands/types.js';
 
 interface CommandDirectory {
   path: string;
@@ -96,7 +85,12 @@ export class FileCommandLoader implements ICommandLoader {
     const commandDirs = this.getCommandDirectories();
     for (const dirInfo of commandDirs) {
       try {
-        const files = await glob('**/*.toml', {
+        // Scan both .toml and .md files
+        const tomlFiles = await glob('**/*.toml', {
+          ...globOptions,
+          cwd: dirInfo.path,
+        });
+        const mdFiles = await glob('**/*.md', {
           ...globOptions,
           cwd: dirInfo.path,
         });
@@ -105,18 +99,28 @@ export class FileCommandLoader implements ICommandLoader {
           return [];
         }
 
-        const commandPromises = files.map((file) =>
-          this.parseAndAdaptFile(
+        // Process TOML files
+        const tomlCommandPromises = tomlFiles.map((file) =>
+          this.parseAndAdaptTomlFile(
             path.join(dirInfo.path, file),
             dirInfo.path,
             dirInfo.extensionName,
           ),
         );
 
-        const commands = (await Promise.all(commandPromises)).filter(
-          (cmd): cmd is SlashCommand => cmd !== null,
+        // Process Markdown files
+        const mdCommandPromises = mdFiles.map((file) =>
+          this.parseAndAdaptMarkdownFile(
+            path.join(dirInfo.path, file),
+            dirInfo.path,
+            dirInfo.extensionName,
+          ),
         );
 
+        const commands = (
+          await Promise.all([...tomlCommandPromises, ...mdCommandPromises])
+        ).filter((cmd): cmd is SlashCommand => cmd !== null);
+
         // Add all commands without deduplication
         allCommands.push(...commands);
       } catch (error) {
@@ -159,17 +163,73 @@ export class FileCommandLoader implements ICommandLoader {
         .filter((ext) => ext.isActive)
         .sort((a, b) => a.name.localeCompare(b.name)); // Sort alphabetically for deterministic loading
 
-      const extensionCommandDirs = activeExtensions.map((ext) => ({
-        path: path.join(ext.path, 'commands'),
-        extensionName: ext.name,
-      }));
+      // Collect command directories from each extension
+      for (const ext of activeExtensions) {
+        // Get commands paths from extension config
+        const commandsPaths = this.getExtensionCommandsPaths(ext);
 
-      dirs.push(...extensionCommandDirs);
+        for (const cmdPath of commandsPaths) {
+          dirs.push({
+            path: cmdPath,
+            extensionName: ext.name,
+          });
+        }
+      }
     }
 
     return dirs;
   }
 
+  /**
+   * Get commands paths from an extension.
+   * Returns paths from config.commands if specified, otherwise defaults to 'commands' directory.
+   */
+  private getExtensionCommandsPaths(ext: {
+    path: string;
+    name: string;
+  }): string[] {
+    // Try to get extension config
+    try {
+      const configPath = path.join(ext.path, EXTENSIONS_CONFIG_FILENAME);
+      if (fsSync.existsSync(configPath)) {
+        const configContent = fsSync.readFileSync(configPath, 'utf-8');
+        const config = JSON.parse(configContent);
+
+        if (config.commands) {
+          const commandsArray = Array.isArray(config.commands)
+            ? config.commands
+            : [config.commands];
+
+          return commandsArray
+            .map((cmdPath: string) =>
+              path.isAbsolute(cmdPath) ? cmdPath : path.join(ext.path, cmdPath),
+            )
+            .filter((cmdPath: string) => {
+              try {
+                return fsSync.existsSync(cmdPath);
+              } catch {
+                return false;
+              }
+            });
+        }
+      }
+    } catch (error) {
+      console.warn(`Failed to read extension config for ${ext.name}:`, error);
+    }
+
+    // Default fallback: use 'commands' directory
+    const defaultPath = path.join(ext.path, 'commands');
+    try {
+      if (fsSync.existsSync(defaultPath)) {
+        return [defaultPath];
+      }
+    } catch {
+      // Ignore
+    }
+
+    return [];
+  }
+
   /**
    * Parses a single .toml file and transforms it into a SlashCommand object.
    * @param filePath The absolute path to the .toml file.
@@ -177,7 +237,7 @@ export class FileCommandLoader implements ICommandLoader {
    * @param extensionName Optional extension name to prefix commands with.
    * @returns A promise resolving to a SlashCommand, or null if the file is invalid.
    */
-  private async parseAndAdaptFile(
+  private async parseAndAdaptTomlFile(
     filePath: string,
     baseDir: string,
     extensionName?: string,
@@ -216,104 +276,79 @@ export class FileCommandLoader implements ICommandLoader {
 
     const validDef = validationResult.data;
 
-    const relativePathWithExt = path.relative(baseDir, filePath);
-    const relativePath = relativePathWithExt.substring(
-      0,
-      relativePathWithExt.length - 5, // length of '.toml'
-    );
-    const baseCommandName = relativePath
-      .split(path.sep)
-      // Sanitize each path segment to prevent ambiguity. Since ':' is our
-      // namespace separator, we replace any literal colons in filenames
-      // with underscores to avoid naming conflicts.
-      .map((segment) => segment.replaceAll(':', '_'))
-      .join(':');
-
-    // Add extension name tag for extension commands
-    const defaultDescription = `Custom command from ${path.basename(filePath)}`;
-    let description = validDef.description || defaultDescription;
-    if (extensionName) {
-      description = `[${extensionName}] ${description}`;
-    }
-
-    const processors: IPromptProcessor[] = [];
-    const usesArgs = validDef.prompt.includes(SHORTHAND_ARGS_PLACEHOLDER);
-    const usesShellInjection = validDef.prompt.includes(
-      SHELL_INJECTION_TRIGGER,
-    );
-    const usesAtFileInjection = validDef.prompt.includes(
-      AT_FILE_INJECTION_TRIGGER,
-    );
-
-    // 1. @-File Injection (Security First).
-    // This runs first to ensure we're not executing shell commands that
-    // could dynamically generate malicious @-paths.
-    if (usesAtFileInjection) {
-      processors.push(new AtFileProcessor(baseCommandName));
-    }
-
-    // 2. Argument and Shell Injection.
-    // This runs after file content has been safely injected.
-    if (usesShellInjection || usesArgs) {
-      processors.push(new ShellProcessor(baseCommandName));
-    }
-
-    // 3. Default Argument Handling.
-    // Appends the raw invocation if no explicit {{args}} are used.
-    if (!usesArgs) {
-      processors.push(new DefaultArgumentProcessor());
-    }
-
-    return {
-      name: baseCommandName,
-      description,
-      kind: CommandKind.FILE,
+    // Use factory to create command
+    return createSlashCommandFromDefinition(
+      filePath,
+      baseDir,
+      validDef,
       extensionName,
-      action: async (
-        context: CommandContext,
-        _args: string,
-      ): Promise<SlashCommandActionReturn> => {
-        if (!context.invocation) {
-          console.error(
-            `[FileCommandLoader] Critical error: Command '${baseCommandName}' was executed without invocation context.`,
-          );
-          return {
-            type: 'submit_prompt',
-            content: [{ text: validDef.prompt }], // Fallback to unprocessed prompt
-          };
-        }
+      '.toml',
+    );
+  }
 
-        try {
-          let processedContent: PromptPipelineContent = [
-            { text: validDef.prompt },
-          ];
-          for (const processor of processors) {
-            processedContent = await processor.process(
-              processedContent,
-              context,
-            );
-          }
+  /**
+   * Parses a single .md file and transforms it into a SlashCommand object.
+   * @param filePath The absolute path to the .md file.
+   * @param baseDir The root command directory for name calculation.
+   * @param extensionName Optional extension name to prefix commands with.
+   * @returns A promise resolving to a SlashCommand, or null if the file is invalid.
+   */
+  private async parseAndAdaptMarkdownFile(
+    filePath: string,
+    baseDir: string,
+    extensionName?: string,
+  ): Promise<SlashCommand | null> {
+    let fileContent: string;
+    try {
+      fileContent = await fs.readFile(filePath, 'utf-8');
+    } catch (error: unknown) {
+      console.error(
+        `[FileCommandLoader] Failed to read file ${filePath}:`,
+        error instanceof Error ? error.message : String(error),
+      );
+      return null;
+    }
 
-          return {
-            type: 'submit_prompt',
-            content: processedContent,
-          };
-        } catch (e) {
-          // Check if it's our specific error type
-          if (e instanceof ConfirmationRequiredError) {
-            // Halt and request confirmation from the UI layer.
-            return {
-              type: 'confirm_shell_commands',
-              commandsToConfirm: e.commandsToConfirm,
-              originalInvocation: {
-                raw: context.invocation.raw,
-              },
-            };
-          }
-          // Re-throw other errors to be handled by the global error handler.
-          throw e;
-        }
-      },
+    let parsed: ReturnType<typeof parseMarkdownCommand>;
+    try {
+      parsed = parseMarkdownCommand(fileContent);
+    } catch (error: unknown) {
+      console.error(
+        `[FileCommandLoader] Failed to parse Markdown file ${filePath}:`,
+        error instanceof Error ? error.message : String(error),
+      );
+      return null;
+    }
+
+    const validationResult = MarkdownCommandDefSchema.safeParse(parsed);
+
+    if (!validationResult.success) {
+      console.error(
+        `[FileCommandLoader] Skipping invalid command file: ${filePath}. Validation errors:`,
+        validationResult.error.flatten(),
+      );
+      return null;
+    }
+
+    const validDef = validationResult.data;
+
+    // Convert to CommandDefinition format
+    const definition: CommandDefinition = {
+      prompt: validDef.prompt,
+      description:
+        validDef.frontmatter?.description &&
+        typeof validDef.frontmatter.description === 'string'
+          ? validDef.frontmatter.description
+          : undefined,
     };
+
+    // Use factory to create command
+    return createSlashCommandFromDefinition(
+      filePath,
+      baseDir,
+      definition,
+      extensionName,
+      '.md',
+    );
   }
 }

packages/cli/src/services/command-factory.ts

@@ -0,0 +1,159 @@
+/**
+ * @license
+ * Copyright 2025 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+/**
+ * This file contains helper functions for FileCommandLoader to create SlashCommand
+ * objects from parsed command definitions (TOML or Markdown).
+ */
+
+import path from 'node:path';
+import type {
+  CommandContext,
+  SlashCommand,
+  SlashCommandActionReturn,
+} from '../ui/commands/types.js';
+import { CommandKind } from '../ui/commands/types.js';
+import { DefaultArgumentProcessor } from './prompt-processors/argumentProcessor.js';
+import type {
+  IPromptProcessor,
+  PromptPipelineContent,
+} from './prompt-processors/types.js';
+import {
+  SHORTHAND_ARGS_PLACEHOLDER,
+  SHELL_INJECTION_TRIGGER,
+  AT_FILE_INJECTION_TRIGGER,
+} from './prompt-processors/types.js';
+import {
+  ConfirmationRequiredError,
+  ShellProcessor,
+} from './prompt-processors/shellProcessor.js';
+import { AtFileProcessor } from './prompt-processors/atFileProcessor.js';
+
+export interface CommandDefinition {
+  prompt: string;
+  description?: string;
+}
+
+/**
+ * Creates a SlashCommand from a parsed command definition.
+ * This function is used by both TOML and Markdown command loaders.
+ *
+ * @param filePath The absolute path to the command file
+ * @param baseDir The root command directory for name calculation
+ * @param definition The parsed command definition (prompt and optional description)
+ * @param extensionName Optional extension name to prefix commands with
+ * @param fileExtension The file extension (e.g., '.toml' or '.md')
+ * @returns A SlashCommand object
+ */
+export function createSlashCommandFromDefinition(
+  filePath: string,
+  baseDir: string,
+  definition: CommandDefinition,
+  extensionName: string | undefined,
+  fileExtension: string,
+): SlashCommand {
+  const relativePathWithExt = path.relative(baseDir, filePath);
+  const relativePath = relativePathWithExt.substring(
+    0,
+    relativePathWithExt.length - fileExtension.length,
+  );
+  const baseCommandName = relativePath
+    .split(path.sep)
+    // Sanitize each path segment to prevent ambiguity. Since ':' is our
+    // namespace separator, we replace any literal colons in filenames
+    // with underscores to avoid naming conflicts.
+    .map((segment) => segment.replaceAll(':', '_'))
+    .join(':');
+
+  // Prefix command name with extension name if provided
+  const commandName = extensionName
+    ? `${extensionName}:${baseCommandName}`
+    : baseCommandName;
+
+  // Add extension name tag for extension commands
+  const defaultDescription = `Custom command from ${path.basename(filePath)}`;
+  let description = definition.description || defaultDescription;
+  if (extensionName) {
+    description = `[${extensionName}] ${description}`;
+  }
+
+  const processors: IPromptProcessor[] = [];
+  const usesArgs = definition.prompt.includes(SHORTHAND_ARGS_PLACEHOLDER);
+  const usesShellInjection = definition.prompt.includes(
+    SHELL_INJECTION_TRIGGER,
+  );
+  const usesAtFileInjection = definition.prompt.includes(
+    AT_FILE_INJECTION_TRIGGER,
+  );
+
+  // 1. @-File Injection (Security First).
+  // This runs first to ensure we're not executing shell commands that
+  // could dynamically generate malicious @-paths.
+  if (usesAtFileInjection) {
+    processors.push(new AtFileProcessor(baseCommandName));
+  }
+
+  // 2. Argument and Shell Injection.
+  // This runs after file content has been safely injected.
+  if (usesShellInjection || usesArgs) {
+    processors.push(new ShellProcessor(baseCommandName));
+  }
+
+  // 3. Default Argument Handling.
+  // Appends the raw invocation if no explicit {{args}} are used.
+  if (!usesArgs) {
+    processors.push(new DefaultArgumentProcessor());
+  }
+
+  return {
+    name: commandName,
+    description,
+    kind: CommandKind.FILE,
+    extensionName,
+    action: async (
+      context: CommandContext,
+      _args: string,
+    ): Promise<SlashCommandActionReturn> => {
+      if (!context.invocation) {
+        console.error(
+          `[FileCommandLoader] Critical error: Command '${commandName}' was executed without invocation context.`,
+        );
+        return {
+          type: 'submit_prompt',
+          content: [{ text: definition.prompt }], // Fallback to unprocessed prompt
+        };
+      }
+
+      try {
+        let processedContent: PromptPipelineContent = [
+          { text: definition.prompt },
+        ];
+        for (const processor of processors) {
+          processedContent = await processor.process(processedContent, context);
+        }
+
+        return {
+          type: 'submit_prompt',
+          content: processedContent,
+        };
+      } catch (e) {
+        // Check if it's our specific error type
+        if (e instanceof ConfirmationRequiredError) {
+          // Halt and request confirmation from the UI layer.
+          return {
+            type: 'confirm_shell_commands',
+            commandsToConfirm: e.commandsToConfirm,
+            originalInvocation: {
+              raw: context.invocation.raw,
+            },
+          };
+        }
+        // Re-throw other errors to be handled by the global error handler.
+        throw e;
+      }
+    },
+  };
+}

packages/cli/src/services/command-migration-tool.test.ts

@@ -0,0 +1,253 @@
+/**
+ * @license
+ * Copyright 2025 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+import { describe, it, expect, beforeEach, afterEach } from 'vitest';
+import { promises as fs } from 'node:fs';
+import path from 'node:path';
+import os from 'node:os';
+import {
+  detectTomlCommands,
+  migrateTomlCommands,
+  generateMigrationPrompt,
+} from './command-migration-tool.js';
+
+describe('command-migration-tool', () => {
+  let tempDir: string;
+
+  beforeEach(async () => {
+    tempDir = await fs.mkdtemp(path.join(os.tmpdir(), 'qwen-migration-test-'));
+  });
+
+  afterEach(async () => {
+    await fs.rm(tempDir, { recursive: true, force: true });
+  });
+
+  describe('detectTomlCommands', () => {
+    it('should detect TOML files in directory', async () => {
+      // Create some TOML files
+      await fs.writeFile(
+        path.join(tempDir, 'cmd1.toml'),
+        'prompt = "test"',
+        'utf-8',
+      );
+      await fs.writeFile(
+        path.join(tempDir, 'cmd2.toml'),
+        'prompt = "test"',
+        'utf-8',
+      );
+
+      const tomlFiles = await detectTomlCommands(tempDir);
+
+      expect(tomlFiles).toHaveLength(2);
+      expect(tomlFiles).toContain('cmd1.toml');
+      expect(tomlFiles).toContain('cmd2.toml');
+    });
+
+    it('should detect TOML files in subdirectories', async () => {
+      const subdir = path.join(tempDir, 'subdir');
+      await fs.mkdir(subdir);
+      await fs.writeFile(
+        path.join(subdir, 'nested.toml'),
+        'prompt = "test"',
+        'utf-8',
+      );
+
+      const tomlFiles = await detectTomlCommands(tempDir);
+
+      expect(tomlFiles).toContain('subdir/nested.toml');
+    });
+
+    it('should return empty array for non-existent directory', async () => {
+      const nonExistent = path.join(tempDir, 'does-not-exist');
+
+      const tomlFiles = await detectTomlCommands(nonExistent);
+
+      expect(tomlFiles).toEqual([]);
+    });
+
+    it('should not detect non-TOML files', async () => {
+      await fs.writeFile(path.join(tempDir, 'file.txt'), 'text', 'utf-8');
+      await fs.writeFile(path.join(tempDir, 'file.md'), 'markdown', 'utf-8');
+
+      const tomlFiles = await detectTomlCommands(tempDir);
+
+      expect(tomlFiles).toHaveLength(0);
+    });
+  });
+
+  describe('migrateTomlCommands', () => {
+    it('should migrate TOML file to Markdown', async () => {
+      const tomlContent = `prompt = "Test prompt"
+description = "Test description"`;
+
+      await fs.writeFile(path.join(tempDir, 'test.toml'), tomlContent, 'utf-8');
+
+      const result = await migrateTomlCommands({
+        commandDir: tempDir,
+        createBackup: true,
+        deleteOriginal: false,
+      });
+
+      expect(result.success).toBe(true);
+      expect(result.convertedFiles).toContain('test.toml');
+      expect(result.failedFiles).toHaveLength(0);
+
+      // Check Markdown file was created
+      const mdPath = path.join(tempDir, 'test.md');
+      const mdContent = await fs.readFile(mdPath, 'utf-8');
+      expect(mdContent).toContain('description: Test description');
+      expect(mdContent).toContain('Test prompt');
+
+      // Check backup was created (original renamed to .toml.backup)
+      const backupPath = path.join(tempDir, 'test.toml.backup');
+      const backupExists = await fs
+        .access(backupPath)
+        .then(() => true)
+        .catch(() => false);
+      expect(backupExists).toBe(true);
+
+      // Original .toml file should not exist (renamed to .backup)
+      const tomlExists = await fs
+        .access(path.join(tempDir, 'test.toml'))
+        .then(() => true)
+        .catch(() => false);
+      expect(tomlExists).toBe(false);
+    });
+
+    it('should delete original TOML when deleteOriginal is true', async () => {
+      await fs.writeFile(
+        path.join(tempDir, 'delete-me.toml'),
+        'prompt = "Test"',
+        'utf-8',
+      );
+
+      await migrateTomlCommands({
+        commandDir: tempDir,
+        createBackup: false,
+        deleteOriginal: true,
+      });
+
+      // Original should be deleted
+      const tomlExists = await fs
+        .access(path.join(tempDir, 'delete-me.toml'))
+        .then(() => true)
+        .catch(() => false);
+      expect(tomlExists).toBe(false);
+
+      // Markdown should exist
+      const mdExists = await fs
+        .access(path.join(tempDir, 'delete-me.md'))
+        .then(() => true)
+        .catch(() => false);
+      expect(mdExists).toBe(true);
+
+      // Backup should not exist (createBackup was false)
+      const backupExists = await fs
+        .access(path.join(tempDir, 'delete-me.toml.backup'))
+        .then(() => true)
+        .catch(() => false);
+      expect(backupExists).toBe(false);
+    });
+
+    it('should fail if Markdown file already exists', async () => {
+      await fs.writeFile(
+        path.join(tempDir, 'existing.toml'),
+        'prompt = "Test"',
+        'utf-8',
+      );
+      await fs.writeFile(
+        path.join(tempDir, 'existing.md'),
+        'Already exists',
+        'utf-8',
+      );
+
+      const result = await migrateTomlCommands({
+        commandDir: tempDir,
+        createBackup: false,
+      });
+
+      expect(result.success).toBe(false);
+      expect(result.failedFiles).toHaveLength(1);
+      expect(result.failedFiles[0].file).toBe('existing.toml');
+      expect(result.failedFiles[0].error).toContain('already exists');
+    });
+
+    it('should handle migration without backup', async () => {
+      await fs.writeFile(
+        path.join(tempDir, 'no-backup.toml'),
+        'prompt = "Test"',
+        'utf-8',
+      );
+
+      const result = await migrateTomlCommands({
+        commandDir: tempDir,
+        createBackup: false,
+        deleteOriginal: false,
+      });
+
+      expect(result.success).toBe(true);
+
+      // Original TOML file should still exist (no backup, no delete)
+      const tomlExists = await fs
+        .access(path.join(tempDir, 'no-backup.toml'))
+        .then(() => true)
+        .catch(() => false);
+      expect(tomlExists).toBe(true);
+
+      // Backup should not exist
+      const backupExists = await fs
+        .access(path.join(tempDir, 'no-backup.toml.backup'))
+        .then(() => true)
+        .catch(() => false);
+      expect(backupExists).toBe(false);
+    });
+
+    it('should return success with empty results for no TOML files', async () => {
+      const result = await migrateTomlCommands({
+        commandDir: tempDir,
+      });
+
+      expect(result.success).toBe(true);
+      expect(result.convertedFiles).toHaveLength(0);
+      expect(result.failedFiles).toHaveLength(0);
+    });
+  });
+
+  describe('generateMigrationPrompt', () => {
+    it('should generate prompt for few files', () => {
+      const files = ['cmd1.toml', 'cmd2.toml'];
+
+      const prompt = generateMigrationPrompt(files);
+
+      expect(prompt).toContain('Found 2 command files');
+      expect(prompt).toContain('cmd1.toml');
+      expect(prompt).toContain('cmd2.toml');
+      expect(prompt).toContain('qwen-code migrate-commands');
+    });
+
+    it('should truncate file list for many files', () => {
+      const files = Array.from({ length: 10 }, (_, i) => `cmd${i}.toml`);
+
+      const prompt = generateMigrationPrompt(files);
+
+      expect(prompt).toContain('Found 10 command files');
+      expect(prompt).toContain('... and 7 more');
+    });
+
+    it('should return empty string for no files', () => {
+      const prompt = generateMigrationPrompt([]);
+
+      expect(prompt).toBe('');
+    });
+
+    it('should use singular form for single file', () => {
+      const prompt = generateMigrationPrompt(['single.toml']);
+
+      expect(prompt).toContain('Found 1 command file');
+      // Don't check for plural since "files" appears in other parts of the message
+    });
+  });
+});

packages/cli/src/services/command-migration-tool.ts

@@ -0,0 +1,169 @@
+/**
+ * @license
+ * Copyright 2025 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+/**
+ * Tool for migrating TOML commands to Markdown format.
+ */
+
+import { promises as fs } from 'node:fs';
+import path from 'node:path';
+import { glob } from 'glob';
+import { convertTomlToMarkdown } from '@qwen-code/qwen-code-core';
+
+export interface MigrationResult {
+  success: boolean;
+  convertedFiles: string[];
+  failedFiles: Array<{ file: string; error: string }>;
+}
+
+export interface MigrationOptions {
+  /** Directory containing command files */
+  commandDir: string;
+  /** Whether to create backups (default: true) */
+  createBackup?: boolean;
+  /** Whether to delete original TOML files after migration (default: false) */
+  deleteOriginal?: boolean;
+}
+
+/**
+ * Scans a directory for TOML command files.
+ * @param commandDir Directory to scan
+ * @returns Array of TOML file paths (relative to commandDir)
+ */
+export async function detectTomlCommands(
+  commandDir: string,
+): Promise<string[]> {
+  try {
+    await fs.access(commandDir);
+  } catch {
+    // Directory doesn't exist
+    return [];
+  }
+
+  const tomlFiles = await glob('**/*.toml', {
+    cwd: commandDir,
+    nodir: true,
+    dot: false,
+  });
+
+  return tomlFiles;
+}
+
+/**
+ * Migrates TOML command files to Markdown format.
+ * @param options Migration options
+ * @returns Migration result with details
+ */
+export async function migrateTomlCommands(
+  options: MigrationOptions,
+): Promise<MigrationResult> {
+  const { commandDir, createBackup = true, deleteOriginal = false } = options;
+
+  const result: MigrationResult = {
+    success: true,
+    convertedFiles: [],
+    failedFiles: [],
+  };
+
+  // Detect TOML files
+  const tomlFiles = await detectTomlCommands(commandDir);
+
+  if (tomlFiles.length === 0) {
+    return result;
+  }
+
+  // Process each TOML file
+  for (const relativeFile of tomlFiles) {
+    const tomlPath = path.join(commandDir, relativeFile);
+
+    try {
+      // Read TOML file
+      const tomlContent = await fs.readFile(tomlPath, 'utf-8');
+
+      // Convert to Markdown
+      const markdownContent = convertTomlToMarkdown(tomlContent);
+
+      // Generate Markdown file path (same location, .md extension)
+      const markdownPath = tomlPath.replace(/\.toml$/, '.md');
+
+      // Check if Markdown file already exists
+      try {
+        await fs.access(markdownPath);
+        throw new Error(
+          `Markdown file already exists: ${path.basename(markdownPath)}`,
+        );
+      } catch (error) {
+        if ((error as NodeJS.ErrnoException).code !== 'ENOENT') {
+          throw error;
+        }
+        // File doesn't exist, continue
+      }
+
+      // Write Markdown file
+      await fs.writeFile(markdownPath, markdownContent, 'utf-8');
+
+      // Backup original if requested (rename to .toml.backup)
+      if (createBackup) {
+        const backupPath = `${tomlPath}.backup`;
+        await fs.rename(tomlPath, backupPath);
+      } else if (deleteOriginal) {
+        // Delete original if requested and no backup
+        await fs.unlink(tomlPath);
+      }
+
+      result.convertedFiles.push(relativeFile);
+    } catch (error) {
+      result.success = false;
+      result.failedFiles.push({
+        file: relativeFile,
+        error: error instanceof Error ? error.message : String(error),
+      });
+    }
+  }
+
+  return result;
+}
+
+/**
+ * Generates a migration report message.
+ * @param tomlFiles List of TOML files found
+ * @returns Human-readable migration prompt message
+ */
+export function generateMigrationPrompt(tomlFiles: string[]): string {
+  if (tomlFiles.length === 0) {
+    return '';
+  }
+
+  const count = tomlFiles.length;
+  const fileList =
+    tomlFiles.length <= 5
+      ? tomlFiles.map((f) => `  - ${f}`).join('\n')
+      : `  - ${tomlFiles.slice(0, 3).join('\n  - ')}\n  - ... and ${tomlFiles.length - 3} more`;
+
+  return `
+⚠️  TOML Command Format Deprecation Notice
+
+Found ${count} command file${count > 1 ? 's' : ''} in TOML format:
+${fileList}
+
+The TOML format for commands is being deprecated in favor of Markdown format.
+Markdown format is more readable and easier to edit.
+
+You can migrate these files automatically using:
+  qwen-code migrate-commands
+
+Or manually convert each file:
+  - TOML: prompt = "..." / description = "..."
+  - Markdown: YAML frontmatter + content
+
+The migration tool will:
+  ✓ Convert TOML files to Markdown
+  ✓ Create backups of original files
+  ✓ Preserve all command functionality
+
+TOML format will continue to work for now, but migration is recommended.
+`.trim();
+}

packages/cli/src/services/markdown-command-parser.test.ts

@@ -0,0 +1,144 @@
+/**
+ * @license
+ * Copyright 2025 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+import { describe, it, expect } from 'vitest';
+import {
+  parseMarkdownCommand,
+  MarkdownCommandDefSchema,
+} from './markdown-command-parser.js';
+
+describe('parseMarkdownCommand', () => {
+  it('should parse markdown with YAML frontmatter', () => {
+    const content = `---
+description: Test command
+---
+
+This is the prompt content.`;
+
+    const result = parseMarkdownCommand(content);
+
+    expect(result).toEqual({
+      frontmatter: {
+        description: 'Test command',
+      },
+      prompt: 'This is the prompt content.',
+    });
+  });
+
+  it('should parse markdown without frontmatter', () => {
+    const content = 'This is just a prompt without frontmatter.';
+
+    const result = parseMarkdownCommand(content);
+
+    expect(result).toEqual({
+      prompt: 'This is just a prompt without frontmatter.',
+    });
+  });
+
+  it('should handle multi-line prompts', () => {
+    const content = `---
+description: Multi-line test
+---
+
+First line of prompt.
+Second line of prompt.
+Third line of prompt.`;
+
+    const result = parseMarkdownCommand(content);
+
+    expect(result.prompt).toBe(
+      'First line of prompt.\nSecond line of prompt.\nThird line of prompt.',
+    );
+  });
+
+  it('should trim whitespace from prompt', () => {
+    const content = `---
+description: Whitespace test
+---
+
+  Prompt with leading and trailing spaces  
+`;
+
+    const result = parseMarkdownCommand(content);
+
+    expect(result.prompt).toBe('Prompt with leading and trailing spaces');
+  });
+
+  it('should handle empty frontmatter', () => {
+    const content = `---
+---
+
+Prompt content after empty frontmatter.`;
+
+    const result = parseMarkdownCommand(content);
+
+    // Empty YAML frontmatter returns undefined, not {}
+    expect(result.frontmatter).toBeUndefined();
+    expect(result.prompt).toBe('Prompt content after empty frontmatter.');
+  });
+
+  it('should handle invalid YAML frontmatter gracefully', () => {
+    // The YAML parser we use is quite tolerant, so most "invalid" YAML
+    // actually parses successfully. This test verifies that behavior.
+    const content = `---
+description: test
+---
+
+Prompt content.`;
+
+    const result = parseMarkdownCommand(content);
+
+    expect(result.frontmatter).toBeDefined();
+    expect(result.prompt).toBe('Prompt content.');
+  });
+});
+
+describe('MarkdownCommandDefSchema', () => {
+  it('should validate valid markdown command def', () => {
+    const validDef = {
+      frontmatter: {
+        description: 'Test description',
+      },
+      prompt: 'Test prompt',
+    };
+
+    const result = MarkdownCommandDefSchema.safeParse(validDef);
+
+    expect(result.success).toBe(true);
+  });
+
+  it('should validate markdown command def without frontmatter', () => {
+    const validDef = {
+      prompt: 'Test prompt',
+    };
+
+    const result = MarkdownCommandDefSchema.safeParse(validDef);
+
+    expect(result.success).toBe(true);
+  });
+
+  it('should reject command def without prompt', () => {
+    const invalidDef = {
+      frontmatter: {
+        description: 'Test description',
+      },
+    };
+
+    const result = MarkdownCommandDefSchema.safeParse(invalidDef);
+
+    expect(result.success).toBe(false);
+  });
+
+  it('should reject command def with non-string prompt', () => {
+    const invalidDef = {
+      prompt: 123,
+    };
+
+    const result = MarkdownCommandDefSchema.safeParse(invalidDef);
+
+    expect(result.success).toBe(false);
+  });
+});

packages/cli/src/services/markdown-command-parser.ts

@@ -0,0 +1,64 @@
+/**
+ * @license
+ * Copyright 2025 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+import { z } from 'zod';
+import { parse as parseYaml } from '@qwen-code/qwen-code-core';
+
+/**
+ * Defines the Zod schema for a Markdown command definition file.
+ * The frontmatter contains optional metadata, and the body is the prompt.
+ */
+export const MarkdownCommandDefSchema = z.object({
+  frontmatter: z
+    .object({
+      description: z.string().optional(),
+    })
+    .optional(),
+  prompt: z.string({
+    required_error: 'The prompt content is required.',
+    invalid_type_error: 'The prompt content must be a string.',
+  }),
+});
+
+export type MarkdownCommandDef = z.infer<typeof MarkdownCommandDefSchema>;
+
+/**
+ * Parses a Markdown command file with optional YAML frontmatter.
+ * @param content The file content
+ * @returns Parsed command definition with frontmatter and prompt
+ */
+export function parseMarkdownCommand(content: string): MarkdownCommandDef {
+  // Match YAML frontmatter pattern: ---\n...\n---\n
+  // Allow empty frontmatter: ---\n---\n  // Use (?:[\s\S]*?) to make the frontmatter content optional
+  const frontmatterRegex = /^---\n([\s\S]*?)---\n([\s\S]*)$/;
+  const match = content.match(frontmatterRegex);
+
+  if (!match) {
+    // No frontmatter, entire content is the prompt
+    return {
+      prompt: content.trim(),
+    };
+  }
+
+  const [, frontmatterYaml, body] = match;
+
+  // Parse YAML frontmatter if not empty
+  let frontmatter: Record<string, unknown> | undefined;
+  if (frontmatterYaml.trim()) {
+    try {
+      frontmatter = parseYaml(frontmatterYaml) as Record<string, unknown>;
+    } catch (error) {
+      throw new Error(
+        `Failed to parse YAML frontmatter: ${error instanceof Error ? error.message : String(error)}`,
+      );
+    }
+  }
+
+  return {
+    frontmatter,
+    prompt: body.trim(),
+  };
+}

packages/cli/src/services/test-commands/example.md

@@ -0,0 +1,5 @@
+---
+description: Example markdown command
+---
+
+This is an example prompt from a markdown file.

packages/cli/src/test-utils/createExtension.ts

@@ -1,49 +0,0 @@
-/**
- * @license
- * Copyright 2025 Google LLC
- * SPDX-License-Identifier: Apache-2.0
- */
-
-import * as fs from 'node:fs';
-import * as path from 'node:path';
-import {
-  EXTENSIONS_CONFIG_FILENAME,
-  INSTALL_METADATA_FILENAME,
-} from '../config/extension.js';
-import {
-  type MCPServerConfig,
-  type ExtensionInstallMetadata,
-} from '@qwen-code/qwen-code-core';
-
-export function createExtension({
-  extensionsDir = 'extensions-dir',
-  name = 'my-extension',
-  version = '1.0.0',
-  addContextFile = false,
-  contextFileName = undefined as string | undefined,
-  mcpServers = {} as Record<string, MCPServerConfig>,
-  installMetadata = undefined as ExtensionInstallMetadata | undefined,
-} = {}): string {
-  const extDir = path.join(extensionsDir, name);
-  fs.mkdirSync(extDir, { recursive: true });
-  fs.writeFileSync(
-    path.join(extDir, EXTENSIONS_CONFIG_FILENAME),
-    JSON.stringify({ name, version, contextFileName, mcpServers }),
-  );
-
-  if (addContextFile) {
-    fs.writeFileSync(path.join(extDir, 'QWEN.md'), 'context');
-  }
-
-  if (contextFileName) {
-    fs.writeFileSync(path.join(extDir, contextFileName), 'context');
-  }
-
-  if (installMetadata) {
-    fs.writeFileSync(
-      path.join(extDir, INSTALL_METADATA_FILENAME),
-      JSON.stringify(installMetadata),
-    );
-  }
-  return extDir;
-}

packages/cli/src/ui/AppContainer.test.tsx

@@ -76,7 +76,6 @@ vi.mock('./hooks/useFolderTrust.js');
 vi.mock('./hooks/useIdeTrustListener.js');
 vi.mock('./hooks/useMessageQueue.js');
 vi.mock('./hooks/useAutoAcceptIndicator.js');
-vi.mock('./hooks/useWorkspaceMigration.js');
 vi.mock('./hooks/useGitBranchName.js');
 vi.mock('./contexts/VimModeContext.js');
 vi.mock('./contexts/SessionContext.js');
@@ -103,7 +102,6 @@ import { useFolderTrust } from './hooks/useFolderTrust.js';
 import { useIdeTrustListener } from './hooks/useIdeTrustListener.js';
 import { useMessageQueue } from './hooks/useMessageQueue.js';
 import { useAutoAcceptIndicator } from './hooks/useAutoAcceptIndicator.js';
-import { useWorkspaceMigration } from './hooks/useWorkspaceMigration.js';
 import { useGitBranchName } from './hooks/useGitBranchName.js';
 import { useVimMode } from './contexts/VimModeContext.js';
 import { useSessionStats } from './contexts/SessionContext.js';
@@ -134,7 +132,6 @@ describe('AppContainer State Management', () => {
   const mockedUseIdeTrustListener = useIdeTrustListener as Mock;
   const mockedUseMessageQueue = useMessageQueue as Mock;
   const mockedUseAutoAcceptIndicator = useAutoAcceptIndicator as Mock;
-  const mockedUseWorkspaceMigration = useWorkspaceMigration as Mock;
   const mockedUseGitBranchName = useGitBranchName as Mock;
   const mockedUseVimMode = useVimMode as Mock;
   const mockedUseSessionStats = useSessionStats as Mock;
@@ -239,12 +236,6 @@ describe('AppContainer State Management', () => {
       getQueuedMessagesText: vi.fn().mockReturnValue(''),
     });
     mockedUseAutoAcceptIndicator.mockReturnValue(false);
-    mockedUseWorkspaceMigration.mockReturnValue({
-      showWorkspaceMigrationDialog: false,
-      workspaceExtensions: [],
-      onWorkspaceMigrationDialogOpen: vi.fn(),
-      onWorkspaceMigrationDialogClose: vi.fn(),
-    });
     mockedUseGitBranchName.mockReturnValue('main');
     mockedUseVimMode.mockReturnValue({
       isVimEnabled: false,

packages/cli/src/ui/AppContainer.tsx

@@ -38,6 +38,7 @@ import {
   getErrorMessage,
   getAllGeminiMdFilenames,
   ShellExecutionService,
+  Storage,
 } from '@qwen-code/qwen-code-core';
 import { buildResumedHistoryItems } from './utils/resumeHistoryUtils.js';
 import { validateAuthMethod } from '../config/auth.js';
@@ -76,6 +77,9 @@ import { useLoadingIndicator } from './hooks/useLoadingIndicator.js';
 import { useFolderTrust } from './hooks/useFolderTrust.js';
 import { useIdeTrustListener } from './hooks/useIdeTrustListener.js';
 import { type IdeIntegrationNudgeResult } from './IdeIntegrationNudge.js';
+import { type CommandMigrationNudgeResult } from './CommandFormatMigrationNudge.js';
+import { useCommandMigration } from './hooks/useCommandMigration.js';
+import { migrateTomlCommands } from '../services/command-migration-tool.js';
 import { appEvents, AppEvent } from '../utils/events.js';
 import { type UpdateObject } from './utils/updateCheck.js';
 import { setUpdateHandler } from '../utils/handleAutoUpdate.js';
@@ -83,10 +87,12 @@ import { ConsolePatcher } from './utils/ConsolePatcher.js';
 import { registerCleanup, runExitCleanup } from '../utils/cleanup.js';
 import { useMessageQueue } from './hooks/useMessageQueue.js';
 import { useAutoAcceptIndicator } from './hooks/useAutoAcceptIndicator.js';
-import { useWorkspaceMigration } from './hooks/useWorkspaceMigration.js';
 import { useSessionStats } from './contexts/SessionContext.js';
 import { useGitBranchName } from './hooks/useGitBranchName.js';
-import { useExtensionUpdates } from './hooks/useExtensionUpdates.js';
+import {
+  useExtensionUpdates,
+  useConfirmUpdateRequests,
+} from './hooks/useExtensionUpdates.js';
 import { ShellFocusContext } from './contexts/ShellFocusContext.js';
 import { t } from '../i18n/index.js';
 import { useWelcomeBack } from './hooks/useWelcomeBack.js';
@@ -97,6 +103,7 @@ import { processVisionSwitchOutcome } from './hooks/useVisionAutoSwitch.js';
 import { useSubagentCreateDialog } from './hooks/useSubagentCreateDialog.js';
 import { useAgentsManagerDialog } from './hooks/useAgentsManagerDialog.js';
 import { useAttentionNotifications } from './hooks/useAttentionNotifications.js';
+import { requestConsentInteractive } from '../commands/extensions/consent.js';
 
 const CTRL_EXIT_PROMPT_DURATION_MS = 1000;
 
@@ -157,15 +164,21 @@ export const AppContainer = (props: AppContainerProps) => {
     config.isTrustedFolder(),
   );
 
-  const extensions = config.getExtensions();
+  const extensionManager = config.getExtensionManager();
+
+  extensionManager.setRequestConsent((description) =>
+    requestConsentInteractive(description, addConfirmUpdateExtensionRequest),
+  );
+
+  const { addConfirmUpdateExtensionRequest, confirmUpdateExtensionRequests } =
+    useConfirmUpdateRequests();
+
   const {
     extensionsUpdateState,
     extensionsUpdateStateInternal,
     dispatchExtensionStateUpdate,
-    confirmUpdateExtensionRequests,
-    addConfirmUpdateExtensionRequest,
   } = useExtensionUpdates(
-    extensions,
+    extensionManager,
     historyManager.addItem,
     config.getWorkingDir(),
   );
@@ -436,13 +449,6 @@ export const AppContainer = (props: AppContainerProps) => {
     remount: refreshStatic,
   });
 
-  const {
-    showWorkspaceMigrationDialog,
-    workspaceExtensions,
-    onWorkspaceMigrationDialogOpen,
-    onWorkspaceMigrationDialogClose,
-  } = useWorkspaceMigration(settings);
-
   const { toggleVimEnabled } = useVimMode();
 
   const {
@@ -578,11 +584,11 @@ export const AppContainer = (props: AppContainerProps) => {
           : [],
         config.getDebugMode(),
         config.getFileService(),
-        settings.merged,
         config.getExtensionContextFilePaths(),
         config.isTrustedFolder(),
         settings.merged.context?.importFormat || 'tree', // Use setting or default to 'tree'
         config.getFileFilteringOptions(),
+        config.getDiscoveryMaxDirs(),
       );
 
       config.setUserMemory(memoryContent);
@@ -845,6 +851,13 @@ export const AppContainer = (props: AppContainerProps) => {
       !idePromptAnswered,
   );
 
+  // Command migration nudge
+  const {
+    showMigrationNudge: shouldShowCommandMigrationNudge,
+    tomlFiles: commandMigrationTomlFiles,
+    setShowMigrationNudge: setShowCommandMigrationNudge,
+  } = useCommandMigration(settings, config.storage);
+
   const [showErrorDetails, setShowErrorDetails] = useState<boolean>(false);
   const [showToolDescriptions, setShowToolDescriptions] =
     useState<boolean>(false);
@@ -935,6 +948,92 @@ export const AppContainer = (props: AppContainerProps) => {
     [handleSlashCommand, settings],
   );
 
+  const handleCommandMigrationComplete = useCallback(
+    async (result: CommandMigrationNudgeResult) => {
+      setShowCommandMigrationNudge(false);
+
+      if (result.userSelection === 'yes') {
+        // Perform migration for both workspace and user levels
+        try {
+          const results = [];
+
+          // Migrate workspace commands
+          const workspaceCommandsDir = config.storage.getProjectCommandsDir();
+          const workspaceResult = await migrateTomlCommands({
+            commandDir: workspaceCommandsDir,
+            createBackup: true,
+            deleteOriginal: false,
+          });
+          if (
+            workspaceResult.convertedFiles.length > 0 ||
+            workspaceResult.failedFiles.length > 0
+          ) {
+            results.push({ level: 'workspace', result: workspaceResult });
+          }
+
+          // Migrate user commands
+          const userCommandsDir = Storage.getUserCommandsDir();
+          const userResult = await migrateTomlCommands({
+            commandDir: userCommandsDir,
+            createBackup: true,
+            deleteOriginal: false,
+          });
+          if (
+            userResult.convertedFiles.length > 0 ||
+            userResult.failedFiles.length > 0
+          ) {
+            results.push({ level: 'user', result: userResult });
+          }
+
+          // Report results
+          for (const { level, result: migrationResult } of results) {
+            if (
+              migrationResult.success &&
+              migrationResult.convertedFiles.length > 0
+            ) {
+              historyManager.addItem(
+                {
+                  type: MessageType.INFO,
+                  text: `[${level}] Successfully migrated ${migrationResult.convertedFiles.length} command file${migrationResult.convertedFiles.length > 1 ? 's' : ''} to Markdown format. Original files backed up as .toml.backup`,
+                },
+                Date.now(),
+              );
+            }
+
+            if (migrationResult.failedFiles.length > 0) {
+              historyManager.addItem(
+                {
+                  type: MessageType.ERROR,
+                  text: `[${level}] Failed to migrate ${migrationResult.failedFiles.length} file${migrationResult.failedFiles.length > 1 ? 's' : ''}:\n${migrationResult.failedFiles.map((f) => `  • ${f.file}: ${f.error}`).join('\n')}`,
+                },
+                Date.now(),
+              );
+            }
+          }
+
+          if (results.length === 0) {
+            historyManager.addItem(
+              {
+                type: MessageType.INFO,
+                text: 'No TOML files found to migrate.',
+              },
+              Date.now(),
+            );
+          }
+        } catch (error) {
+          historyManager.addItem(
+            {
+              type: MessageType.ERROR,
+              text: `❌ Migration failed: ${getErrorMessage(error)}`,
+            },
+            Date.now(),
+          );
+        }
+      }
+    },
+    [historyManager, setShowCommandMigrationNudge, config.storage],
+  );
+
   const { elapsedTime, currentLoadingPhrase } = useLoadingIndicator(
     streamingState,
     settings.merged.ui?.customWittyPhrases,
@@ -1177,8 +1276,8 @@ export const AppContainer = (props: AppContainerProps) => {
 
   const dialogsVisible =
     showWelcomeBackDialog ||
-    showWorkspaceMigrationDialog ||
     shouldShowIdePrompt ||
+    shouldShowCommandMigrationNudge ||
     isFolderTrustDialogOpen ||
     !!shellConfirmationRequest ||
     !!confirmationRequest ||
@@ -1244,6 +1343,8 @@ export const AppContainer = (props: AppContainerProps) => {
       suggestionsWidth,
       isInputActive,
       shouldShowIdePrompt,
+      shouldShowCommandMigrationNudge,
+      commandMigrationTomlFiles,
       isFolderTrustDialogOpen: isFolderTrustDialogOpen ?? false,
       isTrustedFolder,
       constrainHeight,
@@ -1260,8 +1361,6 @@ export const AppContainer = (props: AppContainerProps) => {
       historyRemountKey,
       messageQueue,
       showAutoAcceptIndicator,
-      showWorkspaceMigrationDialog,
-      workspaceExtensions,
       currentModel,
       contextFileNames,
       errorCount,
@@ -1333,6 +1432,8 @@ export const AppContainer = (props: AppContainerProps) => {
       suggestionsWidth,
       isInputActive,
       shouldShowIdePrompt,
+      shouldShowCommandMigrationNudge,
+      commandMigrationTomlFiles,
       isFolderTrustDialogOpen,
       isTrustedFolder,
       constrainHeight,
@@ -1349,8 +1450,6 @@ export const AppContainer = (props: AppContainerProps) => {
       historyRemountKey,
       messageQueue,
       showAutoAcceptIndicator,
-      showWorkspaceMigrationDialog,
-      workspaceExtensions,
       contextFileNames,
       errorCount,
       availableTerminalHeight,
@@ -1404,14 +1503,13 @@ export const AppContainer = (props: AppContainerProps) => {
       setShellModeActive,
       vimHandleInput,
       handleIdePromptComplete,
+      handleCommandMigrationComplete,
       handleFolderTrustSelect,
       setConstrainHeight,
       onEscapePromptChange: handleEscapePromptChange,
       refreshStatic,
       handleFinalSubmit,
       handleClearScreen,
-      onWorkspaceMigrationDialogOpen,
-      onWorkspaceMigrationDialogClose,
       // Vision switch dialog
       handleVisionSwitchSelect,
       // Welcome back dialog
@@ -1441,14 +1539,13 @@ export const AppContainer = (props: AppContainerProps) => {
       setShellModeActive,
       vimHandleInput,
       handleIdePromptComplete,
+      handleCommandMigrationComplete,
       handleFolderTrustSelect,
       setConstrainHeight,
       handleEscapePromptChange,
       refreshStatic,
       handleFinalSubmit,
       handleClearScreen,
-      onWorkspaceMigrationDialogOpen,
-      onWorkspaceMigrationDialogClose,
       handleVisionSwitchSelect,
       handleWelcomeBackSelection,
       handleWelcomeBackClose,

packages/cli/src/ui/CommandFormatMigrationNudge.tsx

@@ -0,0 +1,90 @@
+/**
+ * @license
+ * Copyright 2025 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+import { Box, Text } from 'ink';
+import type { RadioSelectItem } from './components/shared/RadioButtonSelect.js';
+import { RadioButtonSelect } from './components/shared/RadioButtonSelect.js';
+import { useKeypress } from './hooks/useKeypress.js';
+import { theme } from './semantic-colors.js';
+
+export type CommandMigrationNudgeResult = {
+  userSelection: 'yes' | 'no';
+};
+
+interface CommandFormatMigrationNudgeProps {
+  tomlFiles: string[];
+  onComplete: (result: CommandMigrationNudgeResult) => void;
+}
+
+export function CommandFormatMigrationNudge({
+  tomlFiles,
+  onComplete,
+}: CommandFormatMigrationNudgeProps) {
+  useKeypress(
+    (key) => {
+      if (key.name === 'escape') {
+        onComplete({
+          userSelection: 'no',
+        });
+      }
+    },
+    { isActive: true },
+  );
+
+  const OPTIONS: Array<RadioSelectItem<CommandMigrationNudgeResult>> = [
+    {
+      label: 'Yes',
+      value: {
+        userSelection: 'yes',
+      },
+      key: 'Yes',
+    },
+    {
+      label: 'No (esc)',
+      value: {
+        userSelection: 'no',
+      },
+      key: 'No (esc)',
+    },
+  ];
+
+  const count = tomlFiles.length;
+  const fileList =
+    count <= 3
+      ? tomlFiles.map((f) => `  • ${f}`).join('\n')
+      : `  • ${tomlFiles.slice(0, 2).join('\n  • ')}\n  • ... and ${count - 2} more`;
+
+  return (
+    <Box
+      flexDirection="column"
+      borderStyle="round"
+      borderColor={theme.status.warning}
+      padding={1}
+      width="100%"
+      marginLeft={1}
+    >
+      <Box marginBottom={1} flexDirection="column">
+        <Text>
+          <Text color={theme.status.warning}>{'⚠️  '}</Text>
+          <Text bold>Command Format Migration</Text>
+        </Text>
+        <Text color={theme.text.secondary}>
+          {`Found ${count} TOML command file${count > 1 ? 's' : ''}:`}
+        </Text>
+        <Text color={theme.text.secondary}>{fileList}</Text>
+        <Text>{''}</Text>
+        <Text color={theme.text.secondary}>
+          The TOML format is deprecated. Would you like to migrate them to
+          Markdown format?
+        </Text>
+        <Text color={theme.text.secondary}>
+          (Backups will be created and original files will be preserved)
+        </Text>
+      </Box>
+      <RadioButtonSelect items={OPTIONS} onSelect={onComplete} />
+    </Box>
+  );
+}

packages/cli/src/ui/commands/extensionsCommand.ts

@@ -4,13 +4,6 @@
  * SPDX-License-Identifier: Apache-2.0
  */
 
-import { requestConsentInteractive } from '../../config/extension.js';
-import {
-  updateAllUpdatableExtensions,
-  type ExtensionUpdateInfo,
-  updateExtension,
-  checkForAllExtensionUpdates,
-} from '../../config/extensions/update.js';
 import { getErrorMessage } from '../../utils/errors.js';
 import { ExtensionUpdateState } from '../state/extensions.js';
 import { MessageType } from '../types.js';
@@ -20,8 +13,34 @@ import {
   CommandKind,
 } from './types.js';
 import { t } from '../../i18n/index.js';
+import type { ExtensionUpdateInfo } from '@qwen-code/qwen-code-core';
+
+function showMessageIfNoExtensions(
+  context: CommandContext,
+  extensions: unknown[],
+): boolean {
+  if (extensions.length === 0) {
+    context.ui.addItem(
+      {
+        type: MessageType.INFO,
+        text: 'No extensions installed. Run `/extensions explore` to check out the gallery.',
+      },
+      Date.now(),
+    );
+    return true;
+  }
+  return false;
+}
 
 async function listAction(context: CommandContext) {
+  const extensions = context.services.config
+    ? context.services.config.getExtensions()
+    : [];
+
+  if (showMessageIfNoExtensions(context, extensions)) {
+    return;
+  }
+
   context.ui.addItem(
     {
       type: MessageType.EXTENSIONS_LIST,
@@ -34,7 +53,6 @@ async function updateAction(context: CommandContext, args: string) {
   const updateArgs = args.split(' ').filter((value) => value.length > 0);
   const all = updateArgs.length === 1 && updateArgs[0] === '--all';
   const names = all ? undefined : updateArgs;
-  let updateInfos: ExtensionUpdateInfo[] = [];
 
   if (!all && names?.length === 0) {
     context.ui.addItem(
@@ -47,29 +65,40 @@ async function updateAction(context: CommandContext, args: string) {
     return;
   }
 
+  let updateInfos: ExtensionUpdateInfo[] = [];
+
+  const extensionManager = context.services.config!.getExtensionManager();
+  const extensions = context.services.config
+    ? context.services.config.getExtensions()
+    : [];
+
+  if (showMessageIfNoExtensions(context, extensions)) {
+    return Promise.resolve();
+  }
+
   try {
-    await checkForAllExtensionUpdates(
-      context.services.config!.getExtensions(),
-      context.ui.dispatchExtensionStateUpdate,
+    context.ui.dispatchExtensionStateUpdate({ type: 'BATCH_CHECK_START' });
+    await extensionManager.checkForAllExtensionUpdates((extensionName, state) =>
+      context.ui.dispatchExtensionStateUpdate({
+        type: 'SET_STATE',
+        payload: { name: extensionName, state },
+      }),
     );
+    context.ui.dispatchExtensionStateUpdate({ type: 'BATCH_CHECK_END' });
+
     context.ui.setPendingItem({
       type: MessageType.EXTENSIONS_LIST,
     });
     if (all) {
-      updateInfos = await updateAllUpdatableExtensions(
-        context.services.config!.getWorkingDir(),
-        // We don't have the ability to prompt for consent yet in this flow.
-        (description) =>
-          requestConsentInteractive(
-            description,
-            context.ui.addConfirmUpdateExtensionRequest,
-          ),
-        context.services.config!.getExtensions(),
+      updateInfos = await extensionManager.updateAllUpdatableExtensions(
         context.ui.extensionsUpdateState,
-        context.ui.dispatchExtensionStateUpdate,
+        (extensionName, state) =>
+          context.ui.dispatchExtensionStateUpdate({
+            type: 'SET_STATE',
+            payload: { name: extensionName, state },
+          }),
       );
     } else if (names?.length) {
-      const workingDir = context.services.config!.getWorkingDir();
       const extensions = context.services.config!.getExtensions();
       for (const name of names) {
         const extension = extensions.find(
@@ -85,17 +114,15 @@ async function updateAction(context: CommandContext, args: string) {
           );
           continue;
         }
-        const updateInfo = await updateExtension(
+        const updateInfo = await extensionManager.updateExtension(
           extension,
-          workingDir,
-          (description) =>
-            requestConsentInteractive(
-              description,
-              context.ui.addConfirmUpdateExtensionRequest,
-            ),
           context.ui.extensionsUpdateState.get(extension.name)?.status ??
             ExtensionUpdateState.UNKNOWN,
-          context.ui.dispatchExtensionStateUpdate,
+          (extensionName, state) =>
+            context.ui.dispatchExtensionStateUpdate({
+              type: 'SET_STATE',
+              payload: { name: extensionName, state },
+            }),
         );
         if (updateInfo) updateInfos.push(updateInfo);
       }

packages/cli/src/ui/components/DialogManager.tsx

@@ -6,6 +6,7 @@
 
 import { Box, Text } from 'ink';
 import { IdeIntegrationNudge } from '../IdeIntegrationNudge.js';
+import { CommandFormatMigrationNudge } from '../CommandFormatMigrationNudge.js';
 import { LoopDetectionConfirmation } from './LoopDetectionConfirmation.js';
 import { FolderTrustDialog } from './FolderTrustDialog.js';
 import { ShellConfirmationDialog } from './ShellConfirmationDialog.js';
@@ -16,7 +17,6 @@ import { QwenOAuthProgress } from './QwenOAuthProgress.js';
 import { AuthDialog } from '../auth/AuthDialog.js';
 import { OpenAIKeyPrompt } from './OpenAIKeyPrompt.js';
 import { EditorSettingsDialog } from './EditorSettingsDialog.js';
-import { WorkspaceMigrationDialog } from './WorkspaceMigrationDialog.js';
 import { PermissionsModifyTrustDialog } from './PermissionsModifyTrustDialog.js';
 import { ModelDialog } from './ModelDialog.js';
 import { ApprovalModeDialog } from './ApprovalModeDialog.js';
@@ -77,15 +77,6 @@ export const DialogManager = ({
   if (uiState.showIdeRestartPrompt) {
     return <IdeTrustChangeDialog reason={uiState.ideTrustRestartReason} />;
   }
-  if (uiState.showWorkspaceMigrationDialog) {
-    return (
-      <WorkspaceMigrationDialog
-        workspaceExtensions={uiState.workspaceExtensions}
-        onOpen={uiActions.onWorkspaceMigrationDialogOpen}
-        onClose={uiActions.onWorkspaceMigrationDialogClose}
-      />
-    );
-  }
   if (uiState.shouldShowIdePrompt) {
     return (
       <IdeIntegrationNudge
@@ -94,6 +85,14 @@ export const DialogManager = ({
       />
     );
   }
+  if (uiState.shouldShowCommandMigrationNudge) {
+    return (
+      <CommandFormatMigrationNudge
+        tomlFiles={uiState.commandMigrationTomlFiles}
+        onComplete={uiActions.handleCommandMigrationComplete}
+      />
+    );
+  }
   if (uiState.isFolderTrustDialogOpen) {
     return (
       <FolderTrustDialog

packages/cli/src/ui/components/WorkspaceMigrationDialog.tsx

@@ -1,119 +0,0 @@
-/**
- * @license
- * Copyright 2025 Google LLC
- * SPDX-License-Identifier: Apache-2.0
- */
-
-import { Box, Text } from 'ink';
-import {
-  type Extension,
-  performWorkspaceExtensionMigration,
-} from '../../config/extension.js';
-import { RadioButtonSelect } from './shared/RadioButtonSelect.js';
-import { theme } from '../semantic-colors.js';
-import { useState } from 'react';
-import { useKeypress } from '../hooks/useKeypress.js';
-
-export function WorkspaceMigrationDialog(props: {
-  workspaceExtensions: Extension[];
-  onOpen: () => void;
-  onClose: () => void;
-}) {
-  const { workspaceExtensions, onOpen, onClose } = props;
-  const [migrationComplete, setMigrationComplete] = useState(false);
-  const [failedExtensions, setFailedExtensions] = useState<string[]>([]);
-  onOpen();
-  const onMigrate = async () => {
-    const failed = await performWorkspaceExtensionMigration(
-      workspaceExtensions,
-      // We aren't updating extensions, just moving them around, don't need to ask for consent.
-      async (_) => true,
-    );
-    setFailedExtensions(failed);
-    setMigrationComplete(true);
-  };
-
-  useKeypress(
-    (key) => {
-      if (migrationComplete && key.sequence === 'q') {
-        process.exit(0);
-      }
-    },
-    { isActive: true },
-  );
-
-  if (migrationComplete) {
-    return (
-      <Box
-        flexDirection="column"
-        borderStyle="round"
-        borderColor={theme.border.default}
-        padding={1}
-      >
-        {failedExtensions.length > 0 ? (
-          <>
-            <Text color={theme.text.primary}>
-              The following extensions failed to migrate. Please try installing
-              them manually. To see other changes, Qwen Code must be restarted.
-              Press &apos;q&apos; to quit.
-            </Text>
-            <Box flexDirection="column" marginTop={1} marginLeft={2}>
-              {failedExtensions.map((failed) => (
-                <Text key={failed}>- {failed}</Text>
-              ))}
-            </Box>
-          </>
-        ) : (
-          <Text color={theme.text.primary}>
-            Migration complete. To see changes, Qwen Code must be restarted.
-            Press &apos;q&apos; to quit.
-          </Text>
-        )}
-      </Box>
-    );
-  }
-
-  return (
-    <Box
-      flexDirection="column"
-      borderStyle="round"
-      borderColor={theme.border.default}
-      padding={1}
-    >
-      <Text bold color={theme.text.primary}>
-        Workspace-level extensions are deprecated{'\n'}
-      </Text>
-      <Text color={theme.text.primary}>
-        Would you like to install them at the user level?
-      </Text>
-      <Text color={theme.text.primary}>
-        The extension definition will remain in your workspace directory.
-      </Text>
-      <Text color={theme.text.primary}>
-        If you opt to skip, you can install them manually using the extensions
-        install command.
-      </Text>
-
-      <Box flexDirection="column" marginTop={1} marginLeft={2}>
-        {workspaceExtensions.map((extension) => (
-          <Text key={extension.config.name}>- {extension.config.name}</Text>
-        ))}
-      </Box>
-      <Box marginTop={1}>
-        <RadioButtonSelect
-          items={[
-            { label: 'Install all', value: 'migrate', key: 'migrate' },
-            { label: 'Skip', value: 'skip', key: 'skip' },
-          ]}
-          onSelect={(value: string) => {
-            if (value === 'migrate') {
-              onMigrate();
-            } else {
-              onClose();
-            }
-          }}
-        />
-      </Box>
-    </Box>
-  );
-}

packages/cli/src/ui/components/subagents/manage/AgentSelectionStep.tsx

@@ -218,7 +218,7 @@ export const AgentSelectionStep = ({
   const renderAgentItem = (
     agent: {
       name: string;
-      level: 'project' | 'user' | 'builtin' | 'session';
+      level: 'project' | 'user' | 'builtin' | 'session' | 'extension';
       isBuiltin?: boolean;
     },
     index: number,

packages/cli/src/ui/components/views/ExtensionsList.test.tsx

@@ -18,7 +18,6 @@ const mockUseUIState = vi.mocked(useUIState);
 const mockExtensions = [
   { name: 'ext-one', version: '1.0.0', isActive: true },
   { name: 'ext-two', version: '2.1.0', isActive: true },
-  { name: 'ext-disabled', version: '3.0.0', isActive: false },
 ];
 
 describe('<ExtensionsList />', () => {
@@ -29,7 +28,6 @@ describe('<ExtensionsList />', () => {
   const mockUIState = (
     extensions: unknown[],
     extensionsUpdateState: Map<string, ExtensionUpdateState>,
-    disabledExtensions: string[] = [],
   ) => {
     mockUseUIState.mockReturnValue({
       commandContext: createMockCommandContext({
@@ -37,13 +35,6 @@ describe('<ExtensionsList />', () => {
           config: {
             getExtensions: () => extensions,
           },
-          settings: {
-            merged: {
-              extensions: {
-                disabled: disabledExtensions,
-              },
-            },
-          },
         },
       }),
       extensionsUpdateState,
@@ -58,12 +49,11 @@ describe('<ExtensionsList />', () => {
   });
 
   it('should render a list of extensions with their version and status', () => {
-    mockUIState(mockExtensions, new Map(), ['ext-disabled']);
+    mockUIState(mockExtensions, new Map());
     const { lastFrame } = render(<ExtensionsList />);
     const output = lastFrame();
     expect(output).toContain('ext-one (v1.0.0) - active');
     expect(output).toContain('ext-two (v2.1.0) - active');
-    expect(output).toContain('ext-disabled (v3.0.0) - disabled');
   });
 
   it('should display "unknown state" if an extension has no update state', () => {

packages/cli/src/ui/components/views/ExtensionsList.tsx

@@ -9,12 +9,10 @@ import { useUIState } from '../../contexts/UIStateContext.js';
 import { ExtensionUpdateState } from '../../state/extensions.js';
 
 export const ExtensionsList = () => {
-  const { commandContext, extensionsUpdateState } = useUIState();
-  const allExtensions = commandContext.services.config!.getExtensions();
-  const settings = commandContext.services.settings;
-  const disabledExtensions = settings.merged.extensions?.disabled ?? [];
+  const { extensionsUpdateState, commandContext } = useUIState();
+  const extensions = commandContext.services.config?.getExtensions() || [];
 
-  if (allExtensions.length === 0) {
+  if (extensions.length === 0) {
     return <Text>No extensions installed.</Text>;
   }
 
@@ -22,10 +20,11 @@ export const ExtensionsList = () => {
     <Box flexDirection="column" marginTop={1} marginBottom={1}>
       <Text>Installed extensions:</Text>
       <Box flexDirection="column" paddingLeft={2}>
-        {allExtensions.map((ext) => {
+        {extensions.map((ext) => {
           const state = extensionsUpdateState.get(ext.name);
-          const isActive = !disabledExtensions.includes(ext.name);
+          const isActive = ext.isActive;
           const activeString = isActive ? 'active' : 'disabled';
+          const activeColor = isActive ? 'green' : 'grey';
 
           let stateColor = 'gray';
           const stateText = state || 'unknown state';
@@ -44,6 +43,7 @@ export const ExtensionsList = () => {
               break;
             case ExtensionUpdateState.UP_TO_DATE:
             case ExtensionUpdateState.NOT_UPDATABLE:
+            case ExtensionUpdateState.UPDATED:
               stateColor = 'green';
               break;
             default:
@@ -52,12 +52,22 @@ export const ExtensionsList = () => {
           }
 
           return (
-            <Box key={ext.name}>
+            <Box key={ext.name} flexDirection="column" marginBottom={1}>
               <Text>
                 <Text color="cyan">{`${ext.name} (v${ext.version})`}</Text>
-                {` - ${activeString}`}
+                <Text color={activeColor}>{` - ${activeString}`}</Text>
                 {<Text color={stateColor}>{` (${stateText})`}</Text>}
               </Text>
+              {ext.resolvedSettings && ext.resolvedSettings.length > 0 && (
+                <Box flexDirection="column" paddingLeft={2}>
+                  <Text>settings:</Text>
+                  {ext.resolvedSettings.map((setting) => (
+                    <Text key={setting.name}>
+                      - {setting.name}: {setting.value}
+                    </Text>
+                  ))}
+                </Box>
+              )}
             </Box>
           );
         })}

packages/cli/src/ui/contexts/UIActionsContext.tsx

@@ -7,6 +7,7 @@
 import { createContext, useContext } from 'react';
 import { type Key } from '../hooks/useKeypress.js';
 import { type IdeIntegrationNudgeResult } from '../IdeIntegrationNudge.js';
+import { type CommandMigrationNudgeResult } from '../CommandFormatMigrationNudge.js';
 import { type FolderTrustChoice } from '../components/FolderTrustDialog.js';
 import {
   type AuthType,
@@ -47,14 +48,13 @@ export interface UIActions {
   setShellModeActive: (value: boolean) => void;
   vimHandleInput: (key: Key) => boolean;
   handleIdePromptComplete: (result: IdeIntegrationNudgeResult) => void;
+  handleCommandMigrationComplete: (result: CommandMigrationNudgeResult) => void;
   handleFolderTrustSelect: (choice: FolderTrustChoice) => void;
   setConstrainHeight: (value: boolean) => void;
   onEscapePromptChange: (show: boolean) => void;
   refreshStatic: () => void;
   handleFinalSubmit: (value: string) => void;
   handleClearScreen: () => void;
-  onWorkspaceMigrationDialogOpen: () => void;
-  onWorkspaceMigrationDialogClose: () => void;
   // Vision switch dialog
   handleVisionSwitchSelect: (outcome: VisionSwitchOutcome) => void;
   // Welcome back dialog

packages/cli/src/ui/contexts/UIStateContext.tsx

@@ -72,6 +72,8 @@ export interface UIState {
   suggestionsWidth: number;
   isInputActive: boolean;
   shouldShowIdePrompt: boolean;
+  shouldShowCommandMigrationNudge: boolean;
+  commandMigrationTomlFiles: string[];
   isFolderTrustDialogOpen: boolean;
   isTrustedFolder: boolean | undefined;
   constrainHeight: boolean;
@@ -87,9 +89,6 @@ export interface UIState {
   historyRemountKey: number;
   messageQueue: string[];
   showAutoAcceptIndicator: ApprovalMode;
-  showWorkspaceMigrationDialog: boolean;
-  // eslint-disable-next-line @typescript-eslint/no-explicit-any
-  workspaceExtensions: any[]; // Extension[]
   // Quota-related state
   currentModel: string;
   contextFileNames: string[];

packages/cli/src/ui/hooks/useCommandMigration.ts

@@ -0,0 +1,51 @@
+/**
+ * @license
+ * Copyright 2025 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+import { useEffect, useState } from 'react';
+import { Storage } from '@qwen-code/qwen-code-core';
+import { detectTomlCommands } from '../../services/command-migration-tool.js';
+import type { LoadedSettings } from '../../config/settings.js';
+
+/**
+ * Hook to detect TOML command files and manage migration nudge visibility.
+ * Checks all command directories: workspace, user, and global levels.
+ */
+export function useCommandMigration(
+  settings: LoadedSettings,
+  storage: Storage,
+) {
+  const [showMigrationNudge, setShowMigrationNudge] = useState(false);
+  const [tomlFiles, setTomlFiles] = useState<string[]>([]);
+
+  useEffect(() => {
+    const checkTomlCommands = async () => {
+      const allFiles: string[] = [];
+
+      // Check workspace commands directory (.qwen/commands)
+      const workspaceCommandsDir = storage.getProjectCommandsDir();
+      const workspaceFiles = await detectTomlCommands(workspaceCommandsDir);
+      allFiles.push(...workspaceFiles.map((f) => `workspace: ${f}`));
+
+      // Check user commands directory (~/.qwen/commands)
+      const userCommandsDir = Storage.getUserCommandsDir();
+      const userFiles = await detectTomlCommands(userCommandsDir);
+      allFiles.push(...userFiles.map((f) => `user: ${f}`));
+
+      if (allFiles.length > 0) {
+        setTomlFiles(allFiles);
+        setShowMigrationNudge(true);
+      }
+    };
+
+    checkTomlCommands();
+  }, [storage]);
+
+  return {
+    showMigrationNudge,
+    tomlFiles,
+    setShowMigrationNudge,
+  };
+}

packages/cli/src/ui/hooks/useExtensionUpdates.test.ts

@@ -4,26 +4,21 @@
  * SPDX-License-Identifier: Apache-2.0
  */
 
-import { vi } from 'vitest';
+import { vi, describe, it, expect, beforeEach, afterEach } from 'vitest';
 import * as fs from 'node:fs';
 import * as os from 'node:os';
 import * as path from 'node:path';
-import {
-  ExtensionStorage,
-  annotateActiveExtensions,
-  loadExtension,
-} from '../../config/extension.js';
-import { createExtension } from '../../test-utils/createExtension.js';
+
 import { useExtensionUpdates } from './useExtensionUpdates.js';
-import { QWEN_DIR, type GeminiCLIExtension } from '@qwen-code/qwen-code-core';
+import {
+  QWEN_DIR,
+  type ExtensionManager,
+  type Extension,
+  type ExtensionUpdateInfo,
+  ExtensionUpdateState,
+} from '@qwen-code/qwen-code-core';
 import { renderHook, waitFor } from '@testing-library/react';
 import { MessageType } from '../types.js';
-import { ExtensionEnablementManager } from '../../config/extensions/extensionEnablement.js';
-import {
-  checkForAllExtensionUpdates,
-  updateExtension,
-} from '../../config/extensions/update.js';
-import { ExtensionUpdateState } from '../state/extensions.js';
 
 vi.mock('os', async (importOriginal) => {
   const mockedOs = await importOriginal<typeof os>();
@@ -33,63 +28,85 @@ vi.mock('os', async (importOriginal) => {
   };
 });
 
-vi.mock('../../config/extensions/update.js', () => ({
-  checkForAllExtensionUpdates: vi.fn(),
-  updateExtension: vi.fn(),
-}));
+function createMockExtension(overrides: Partial<Extension> = {}): Extension {
+  return {
+    id: 'test-extension-id',
+    name: 'test-extension',
+    version: '1.0.0',
+    path: '/some/path',
+    isActive: true,
+    config: {
+      name: 'test-extension',
+      version: '1.0.0',
+    },
+    contextFiles: [],
+    installMetadata: {
+      type: 'git',
+      source: 'https://some/repo',
+      autoUpdate: false,
+    },
+    ...overrides,
+  };
+}
+
+function createMockExtensionManager(
+  extensions: Extension[],
+  checkCallback?: (
+    callback: (extensionName: string, state: ExtensionUpdateState) => void,
+  ) => Promise<void>,
+  updateResult?: ExtensionUpdateInfo | undefined,
+): ExtensionManager {
+  return {
+    getLoadedExtensions: vi.fn(() => extensions),
+    checkForAllExtensionUpdates: vi.fn(
+      async (
+        callback: (extensionName: string, state: ExtensionUpdateState) => void,
+      ) => {
+        if (checkCallback) {
+          await checkCallback(callback);
+        }
+      },
+    ),
+    updateExtension: vi.fn(async () => updateResult),
+  } as unknown as ExtensionManager;
+}
 
 describe('useExtensionUpdates', () => {
   let tempHomeDir: string;
   let userExtensionsDir: string;
 
   beforeEach(() => {
-    tempHomeDir = fs.mkdtempSync(
-      path.join(os.tmpdir(), 'gemini-cli-test-home-'),
-    );
+    tempHomeDir = fs.mkdtempSync(path.join(os.tmpdir(), 'qwen-cli-test-home-'));
     vi.mocked(os.homedir).mockReturnValue(tempHomeDir);
     userExtensionsDir = path.join(tempHomeDir, QWEN_DIR, 'extensions');
     fs.mkdirSync(userExtensionsDir, { recursive: true });
-    vi.mocked(checkForAllExtensionUpdates).mockReset();
-    vi.mocked(updateExtension).mockReset();
   });
 
   afterEach(() => {
     fs.rmSync(tempHomeDir, { recursive: true, force: true });
+    vi.clearAllMocks();
   });
 
   it('should check for updates and log a message if an update is available', async () => {
-    const extensions = [
-      {
-        name: 'test-extension',
+    const extension = createMockExtension({
+      name: 'test-extension',
+      installMetadata: {
         type: 'git',
-        version: '1.0.0',
-        path: '/some/path',
-        isActive: true,
-        installMetadata: {
-          type: 'git',
-          source: 'https://some/repo',
-          autoUpdate: false,
-        },
+        source: 'https://some/repo',
+        autoUpdate: false,
       },
-    ];
+    });
     const addItem = vi.fn();
     const cwd = '/test/cwd';
 
-    vi.mocked(checkForAllExtensionUpdates).mockImplementation(
-      async (extensions, dispatch) => {
-        dispatch({
-          type: 'SET_STATE',
-          payload: {
-            name: 'test-extension',
-            state: ExtensionUpdateState.UPDATE_AVAILABLE,
-          },
-        });
+    const extensionManager = createMockExtensionManager(
+      [extension],
+      async (callback) => {
+        callback('test-extension', ExtensionUpdateState.UPDATE_AVAILABLE);
       },
     );
 
-    renderHook(() =>
-      useExtensionUpdates(extensions as GeminiCLIExtension[], addItem, cwd),
-    );
+    renderHook(() => useExtensionUpdates(extensionManager, addItem, cwd));
 
     await waitFor(() => {
       expect(addItem).toHaveBeenCalledWith(
@@ -103,43 +120,32 @@ describe('useExtensionUpdates', () => {
   });
 
   it('should check for updates and automatically update if autoUpdate is true', async () => {
-    const extensionDir = createExtension({
-      extensionsDir: userExtensionsDir,
+    const extension = createMockExtension({
       name: 'test-extension',
-      version: '1.0.0',
       installMetadata: {
-        source: 'https://some.git/repo',
         type: 'git',
+        source: 'https://some.git/repo',
         autoUpdate: true,
       },
     });
-    const extension = annotateActiveExtensions(
-      [loadExtension({ extensionDir, workspaceDir: tempHomeDir })!],
-      tempHomeDir,
-      new ExtensionEnablementManager(ExtensionStorage.getUserExtensionsDir()),
-    )[0];
 
     const addItem = vi.fn();
 
-    vi.mocked(checkForAllExtensionUpdates).mockImplementation(
-      async (extensions, dispatch) => {
-        dispatch({
-          type: 'SET_STATE',
-          payload: {
-            name: 'test-extension',
-            state: ExtensionUpdateState.UPDATE_AVAILABLE,
-          },
-        });
+    const extensionManager = createMockExtensionManager(
+      [extension],
+      async (callback) => {
+        callback('test-extension', ExtensionUpdateState.UPDATE_AVAILABLE);
+      },
+      {
+        originalVersion: '1.0.0',
+        updatedVersion: '1.1.0',
+        name: 'test-extension',
       },
     );
 
-    vi.mocked(updateExtension).mockResolvedValue({
-      originalVersion: '1.0.0',
-      updatedVersion: '1.1.0',
-      name: '',
-    });
-
-    renderHook(() => useExtensionUpdates([extension], addItem, tempHomeDir));
+    renderHook(() =>
+      useExtensionUpdates(extensionManager, addItem, tempHomeDir),
+    );
 
     await waitFor(
       () => {
@@ -156,77 +162,64 @@ describe('useExtensionUpdates', () => {
   });
 
   it('should batch update notifications for multiple extensions', async () => {
-    const extensionDir1 = createExtension({
-      extensionsDir: userExtensionsDir,
+    const extension1 = createMockExtension({
+      id: 'test-extension-1-id',
       name: 'test-extension-1',
       version: '1.0.0',
       installMetadata: {
-        source: 'https://some.git/repo1',
         type: 'git',
+        source: 'https://some.git/repo1',
         autoUpdate: true,
       },
     });
-    const extensionDir2 = createExtension({
-      extensionsDir: userExtensionsDir,
+    const extension2 = createMockExtension({
+      id: 'test-extension-2-id',
       name: 'test-extension-2',
       version: '2.0.0',
       installMetadata: {
-        source: 'https://some.git/repo2',
         type: 'git',
+        source: 'https://some.git/repo2',
         autoUpdate: true,
       },
     });
 
-    const extensions = annotateActiveExtensions(
-      [
-        loadExtension({
-          extensionDir: extensionDir1,
-          workspaceDir: tempHomeDir,
-        })!,
-        loadExtension({
-          extensionDir: extensionDir2,
-          workspaceDir: tempHomeDir,
-        })!,
-      ],
-      tempHomeDir,
-      new ExtensionEnablementManager(ExtensionStorage.getUserExtensionsDir()),
-    );
-
     const addItem = vi.fn();
+    let updateCallCount = 0;
 
-    vi.mocked(checkForAllExtensionUpdates).mockImplementation(
-      async (extensions, dispatch) => {
-        dispatch({
-          type: 'SET_STATE',
-          payload: {
+    const extensionManager = {
+      getLoadedExtensions: vi.fn(() => [extension1, extension2]),
+      checkForAllExtensionUpdates: vi.fn(
+        async (
+          callback: (
+            extensionName: string,
+            state: ExtensionUpdateState,
+          ) => void,
+        ) => {
+          callback('test-extension-1', ExtensionUpdateState.UPDATE_AVAILABLE);
+          callback('test-extension-2', ExtensionUpdateState.UPDATE_AVAILABLE);
+        },
+      ),
+      updateExtension: vi.fn(async () => {
+        updateCallCount++;
+        if (updateCallCount === 1) {
+          return {
+            originalVersion: '1.0.0',
+            updatedVersion: '1.1.0',
             name: 'test-extension-1',
-            state: ExtensionUpdateState.UPDATE_AVAILABLE,
-          },
-        });
-        dispatch({
-          type: 'SET_STATE',
-          payload: {
-            name: 'test-extension-2',
-            state: ExtensionUpdateState.UPDATE_AVAILABLE,
-          },
-        });
-      },
+          };
+        }
+        return {
+          originalVersion: '2.0.0',
+          updatedVersion: '2.1.0',
+          name: 'test-extension-2',
+        };
+      }),
+    } as unknown as ExtensionManager;
+
+    renderHook(() =>
+      useExtensionUpdates(extensionManager, addItem, tempHomeDir),
     );
 
-    vi.mocked(updateExtension)
-      .mockResolvedValueOnce({
-        originalVersion: '1.0.0',
-        updatedVersion: '1.1.0',
-        name: '',
-      })
-      .mockResolvedValueOnce({
-        originalVersion: '2.0.0',
-        updatedVersion: '2.1.0',
-        name: '',
-      });
-
-    renderHook(() => useExtensionUpdates(extensions, addItem, tempHomeDir));
-
     await waitFor(
       () => {
         expect(addItem).toHaveBeenCalledTimes(2);
@@ -250,60 +243,40 @@ describe('useExtensionUpdates', () => {
   });
 
   it('should batch update notifications for multiple extensions with autoUpdate: false', async () => {
-    const extensions = [
-      {
-        name: 'test-extension-1',
+    const extension1 = createMockExtension({
+      id: 'test-extension-1-id',
+      name: 'test-extension-1',
+      version: '1.0.0',
+      installMetadata: {
         type: 'git',
-        version: '1.0.0',
-        path: '/some/path1',
-        isActive: true,
-        installMetadata: {
-          type: 'git',
-          source: 'https://some/repo1',
-          autoUpdate: false,
-        },
+        source: 'https://some/repo1',
+        autoUpdate: false,
       },
-      {
-        name: 'test-extension-2',
+    });
+    const extension2 = createMockExtension({
+      id: 'test-extension-2-id',
+      name: 'test-extension-2',
+      version: '2.0.0',
+      installMetadata: {
         type: 'git',
-        version: '2.0.0',
-        path: '/some/path2',
-        isActive: true,
-        installMetadata: {
-          type: 'git',
-          source: 'https://some/repo2',
-          autoUpdate: false,
-        },
+        source: 'https://some/repo2',
+        autoUpdate: false,
       },
-    ];
+    });
+
     const addItem = vi.fn();
     const cwd = '/test/cwd';
 
-    vi.mocked(checkForAllExtensionUpdates).mockImplementation(
-      async (extensions, dispatch) => {
-        dispatch({ type: 'BATCH_CHECK_START' });
-        dispatch({
-          type: 'SET_STATE',
-          payload: {
-            name: 'test-extension-1',
-            state: ExtensionUpdateState.UPDATE_AVAILABLE,
-          },
-        });
+    const extensionManager = createMockExtensionManager(
+      [extension1, extension2],
+      async (callback) => {
+        callback('test-extension-1', ExtensionUpdateState.UPDATE_AVAILABLE);
         await new Promise((r) => setTimeout(r, 50));
-        dispatch({
-          type: 'SET_STATE',
-          payload: {
-            name: 'test-extension-2',
-            state: ExtensionUpdateState.UPDATE_AVAILABLE,
-          },
-        });
-        dispatch({ type: 'BATCH_CHECK_END' });
+        callback('test-extension-2', ExtensionUpdateState.UPDATE_AVAILABLE);
       },
     );
 
-    renderHook(() =>
-      useExtensionUpdates(extensions as GeminiCLIExtension[], addItem, cwd),
-    );
+    renderHook(() => useExtensionUpdates(extensionManager, addItem, cwd));
 
     await waitFor(() => {
       expect(addItem).toHaveBeenCalledTimes(1);

packages/cli/src/ui/hooks/useExtensionUpdates.ts

@@ -4,7 +4,7 @@
  * SPDX-License-Identifier: Apache-2.0
  */
 
-import type { GeminiCLIExtension } from '@qwen-code/qwen-code-core';
+import type { ExtensionManager } from '@qwen-code/qwen-code-core';
 import { getErrorMessage } from '../../utils/errors.js';
 import {
   ExtensionUpdateState,
@@ -14,11 +14,6 @@ import {
 import { useCallback, useEffect, useMemo, useReducer } from 'react';
 import type { UseHistoryManagerReturn } from './useHistoryManager.js';
 import { MessageType, type ConfirmationRequest } from '../types.js';
-import {
-  checkForAllExtensionUpdates,
-  updateExtension,
-} from '../../config/extensions/update.js';
-import { requestConsentInteractive } from '../../config/extension.js';
 import { checkExhaustive } from '../../utils/checks.js';
 
 type ConfirmationRequestWrapper = {
@@ -45,15 +40,7 @@ function confirmationRequestsReducer(
   }
 }
 
-export const useExtensionUpdates = (
-  extensions: GeminiCLIExtension[],
-  addItem: UseHistoryManagerReturn['addItem'],
-  cwd: string,
-) => {
-  const [extensionsUpdateState, dispatchExtensionStateUpdate] = useReducer(
-    extensionUpdatesReducer,
-    initialExtensionUpdatesState,
-  );
+export const useConfirmUpdateRequests = () => {
   const [
     confirmUpdateExtensionRequests,
     dispatchConfirmUpdateExtensionRequests,
@@ -78,15 +65,52 @@ export const useExtensionUpdates = (
     },
     [dispatchConfirmUpdateExtensionRequests],
   );
+  return {
+    addConfirmUpdateExtensionRequest,
+    confirmUpdateExtensionRequests,
+    dispatchConfirmUpdateExtensionRequests,
+  };
+};
+
+export const useExtensionUpdates = (
+  extensionManager: ExtensionManager,
+  addItem: UseHistoryManagerReturn['addItem'],
+  cwd: string,
+) => {
+  const [extensionsUpdateState, dispatchExtensionStateUpdate] = useReducer(
+    extensionUpdatesReducer,
+    initialExtensionUpdatesState,
+  );
+  const extensions = extensionManager.getLoadedExtensions();
 
   useEffect(() => {
     (async () => {
-      await checkForAllExtensionUpdates(
-        extensions,
-        dispatchExtensionStateUpdate,
+      const extensionsToCheck = extensions.filter((extension) => {
+        const currentStatus = extensionsUpdateState.extensionStatuses.get(
+          extension.name,
+        );
+        if (!currentStatus) return true;
+        const currentState = currentStatus.status;
+        return !currentState || currentState === ExtensionUpdateState.UNKNOWN;
+      });
+      if (extensionsToCheck.length === 0) return;
+      dispatchExtensionStateUpdate({ type: 'BATCH_CHECK_START' });
+      await extensionManager.checkForAllExtensionUpdates(
+        (extensionName: string, state: ExtensionUpdateState) => {
+          dispatchExtensionStateUpdate({
+            type: 'SET_STATE',
+            payload: { name: extensionName, state },
+          });
+        },
       );
+      dispatchExtensionStateUpdate({ type: 'BATCH_CHECK_END' });
     })();
-  }, [extensions, extensions.length, dispatchExtensionStateUpdate]);
+  }, [
+    extensions,
+    extensionManager,
+    extensionsUpdateState.extensionStatuses,
+    dispatchExtensionStateUpdate,
+  ]);
 
   useEffect(() => {
     if (extensionsUpdateState.batchChecksInProgress > 0) {
@@ -113,17 +137,17 @@ export const useExtensionUpdates = (
       });
 
       if (extension.installMetadata?.autoUpdate) {
-        updateExtension(
-          extension,
-          cwd,
-          (description) =>
-            requestConsentInteractive(
-              description,
-              addConfirmUpdateExtensionRequest,
-            ),
-          currentState.status,
-          dispatchExtensionStateUpdate,
-        )
+        extensionManager
+          .updateExtension(
+            extension,
+            currentState.status,
+            (extensionName, state) => {
+              dispatchExtensionStateUpdate({
+                type: 'SET_STATE',
+                payload: { name: extensionName, state },
+              });
+            },
+          )
           .then((result) => {
             if (!result) return;
             addItem(
@@ -157,13 +181,7 @@ export const useExtensionUpdates = (
         Date.now(),
       );
     }
-  }, [
-    extensions,
-    extensionsUpdateState,
-    addConfirmUpdateExtensionRequest,
-    addItem,
-    cwd,
-  ]);
+  }, [extensions, extensionManager, extensionsUpdateState, addItem, cwd]);
 
   const extensionsUpdateStateComputed = useMemo(() => {
     const result = new Map<string, ExtensionUpdateState>();
@@ -180,7 +198,5 @@ export const useExtensionUpdates = (
     extensionsUpdateState: extensionsUpdateStateComputed,
     extensionsUpdateStateInternal: extensionsUpdateState.extensionStatuses,
     dispatchExtensionStateUpdate,
-    confirmUpdateExtensionRequests,
-    addConfirmUpdateExtensionRequest,
   };
 };

packages/cli/src/ui/hooks/useWorkspaceMigration.ts

@@ -1,70 +0,0 @@
-/**
- * @license
- * Copyright 2025 Google LLC
- * SPDX-License-Identifier: Apache-2.0
- */
-
-import { useState, useEffect } from 'react';
-import {
-  type Extension,
-  getWorkspaceExtensions,
-} from '../../config/extension.js';
-import { type LoadedSettings, SettingScope } from '../../config/settings.js';
-import process from 'node:process';
-
-export function useWorkspaceMigration(settings: LoadedSettings) {
-  const [showWorkspaceMigrationDialog, setShowWorkspaceMigrationDialog] =
-    useState(false);
-  const [workspaceExtensions, setWorkspaceExtensions] = useState<Extension[]>(
-    [],
-  );
-
-  useEffect(() => {
-    // Default to true if not set.
-    if (!(settings.merged.experimental?.extensionManagement ?? true)) {
-      return;
-    }
-    const cwd = process.cwd();
-    const extensions = getWorkspaceExtensions(cwd);
-    if (
-      extensions.length > 0 &&
-      !settings.merged.extensions?.workspacesWithMigrationNudge?.includes(cwd)
-    ) {
-      setWorkspaceExtensions(extensions);
-      setShowWorkspaceMigrationDialog(true);
-      console.log(settings.merged.extensions);
-    }
-  }, [
-    settings.merged.extensions,
-    settings.merged.experimental?.extensionManagement,
-  ]);
-
-  const onWorkspaceMigrationDialogOpen = () => {
-    const userSettings = settings.forScope(SettingScope.User);
-    const extensionSettings = userSettings.settings.extensions || {
-      disabled: [],
-    };
-    const workspacesWithMigrationNudge =
-      extensionSettings.workspacesWithMigrationNudge || [];
-
-    const cwd = process.cwd();
-    if (!workspacesWithMigrationNudge.includes(cwd)) {
-      workspacesWithMigrationNudge.push(cwd);
-    }
-
-    extensionSettings.workspacesWithMigrationNudge =
-      workspacesWithMigrationNudge;
-    settings.setValue(SettingScope.User, 'extensions', extensionSettings);
-  };
-
-  const onWorkspaceMigrationDialogClose = () => {
-    setShowWorkspaceMigrationDialog(false);
-  };
-
-  return {
-    showWorkspaceMigrationDialog,
-    workspaceExtensions,
-    onWorkspaceMigrationDialogOpen,
-    onWorkspaceMigrationDialogClose,
-  };
-}

packages/cli/src/ui/state/extensions.ts

@@ -10,6 +10,7 @@ export enum ExtensionUpdateState {
   CHECKING_FOR_UPDATES = 'checking for updates',
   UPDATED_NEEDS_RESTART = 'updated, needs restart',
   UPDATING = 'updating',
+  UPDATED = 'updated',
   UPDATE_AVAILABLE = 'update available',
   UP_TO_DATE = 'up to date',
   ERROR = 'error',

packages/cli/src/utils/envVarResolver.ts

@@ -17,10 +17,16 @@
  * resolveEnvVarsInString("URL: ${BASE_URL}/api") // Returns "URL: https://api.example.com/api"
  * resolveEnvVarsInString("Missing: $UNDEFINED_VAR") // Returns "Missing: $UNDEFINED_VAR"
  */
-export function resolveEnvVarsInString(value: string): string {
+export function resolveEnvVarsInString(
+  value: string,
+  customEnv?: Record<string, string>,
+): string {
   const envVarRegex = /\$(?:(\w+)|{([^}]+)})/g; // Find $VAR_NAME or ${VAR_NAME}
   return value.replace(envVarRegex, (match, varName1, varName2) => {
     const varName = varName1 || varName2;
+    if (customEnv && typeof customEnv[varName] === 'string') {
+      return customEnv[varName];
+    }
     if (process && process.env && typeof process.env[varName] === 'string') {
       return process.env[varName]!;
     }
@@ -47,8 +53,11 @@ export function resolveEnvVarsInString(value: string): string {
  * };
  * const resolved = resolveEnvVarsInObject(config);
  */
-export function resolveEnvVarsInObject<T>(obj: T): T {
-  return resolveEnvVarsInObjectInternal(obj, new WeakSet());
+export function resolveEnvVarsInObject<T>(
+  obj: T,
+  customEnv?: Record<string, string>,
+): T {
+  return resolveEnvVarsInObjectInternal(obj, new WeakSet(), customEnv);
 }
 
 /**
@@ -61,6 +70,7 @@ export function resolveEnvVarsInObject<T>(obj: T): T {
 function resolveEnvVarsInObjectInternal<T>(
   obj: T,
   visited: WeakSet<object>,
+  customEnv?: Record<string, string>,
 ): T {
   if (
     obj === null ||
@@ -72,7 +82,7 @@ function resolveEnvVarsInObjectInternal<T>(
   }
 
   if (typeof obj === 'string') {
-    return resolveEnvVarsInString(obj) as unknown as T;
+    return resolveEnvVarsInString(obj, customEnv) as unknown as T;
   }
 
   if (Array.isArray(obj)) {
@@ -84,7 +94,7 @@ function resolveEnvVarsInObjectInternal<T>(
 
     visited.add(obj);
     const result = obj.map((item) =>
-      resolveEnvVarsInObjectInternal(item, visited),
+      resolveEnvVarsInObjectInternal(item, visited, customEnv),
     ) as unknown as T;
     visited.delete(obj);
     return result;
@@ -101,7 +111,11 @@ function resolveEnvVarsInObjectInternal<T>(
     const newObj = { ...obj } as T;
     for (const key in newObj) {
       if (Object.prototype.hasOwnProperty.call(newObj, key)) {
-        newObj[key] = resolveEnvVarsInObjectInternal(newObj[key], visited);
+        newObj[key] = resolveEnvVarsInObjectInternal(
+          newObj[key],
+          visited,
+          customEnv,
+        );
       }
     }
     visited.delete(obj as object);

packages/cli/tsconfig.json

@@ -11,7 +11,9 @@
     "src/**/*.ts",
     "src/**/*.tsx",
     "src/**/*.json",
-    "./package.json"
+    "./package.json",
+    "../core/src/utils/toml-to-markdown-converter.test.ts",
+    "../core/src/utils/toml-to-markdown-converter.ts"
   ],
   "exclude": [
     "node_modules",

packages/core/src/config/config.ts

@@ -80,6 +80,10 @@ import {
   type TelemetryTarget,
   uiTelemetryService,
 } from '../telemetry/index.js';
+import {
+  ExtensionManager,
+  type Extension,
+} from '../extension/extensionManager.js';
 
 // Utils
 import { shouldAttemptBrowserLaunch } from '../utils/browser.js';
@@ -102,6 +106,7 @@ import {
   type ResumedSessionData,
 } from '../services/sessionService.js';
 import { randomUUID } from 'node:crypto';
+import { loadServerHierarchicalMemory } from '../utils/memoryDiscovery.js';
 
 // Re-export types
 export type { AnyToolInvocation, FileFilteringOptions, MCPOAuthConfig };
@@ -192,20 +197,17 @@ export interface GitCoAuthorSettings {
   email?: string;
 }
 
-export interface GeminiCLIExtension {
-  name: string;
-  version: string;
-  isActive: boolean;
-  path: string;
-  installMetadata?: ExtensionInstallMetadata;
-}
-
 export interface ExtensionInstallMetadata {
   source: string;
-  type: 'git' | 'local' | 'link' | 'github-release';
+  type: 'git' | 'local' | 'link' | 'github-release' | 'marketplace';
   releaseTag?: string; // Only present for github-release installs.
   ref?: string;
   autoUpdate?: boolean;
+  allowPreRelease?: boolean;
+  marketplace?: {
+    marketplaceSource: string;
+    pluginName: string;
+  };
 }
 
 export const DEFAULT_TRUNCATE_TOOL_OUTPUT_THRESHOLD = 25_000;
@@ -303,14 +305,15 @@ export interface ConfigParameters {
   includeDirectories?: string[];
   bugCommand?: BugCommandSettings;
   model?: string;
-  extensionContextFilePaths?: string[];
+  outputLanguageFilePath?: string;
   maxSessionTurns?: number;
   sessionTokenLimit?: number;
   experimentalSkills?: boolean;
   experimentalZedIntegration?: boolean;
   listExtensions?: boolean;
-  extensions?: GeminiCLIExtension[];
-  blockedMcpServers?: Array<{ name: string; extensionName: string }>;
+  overrideExtensions?: string[];
+  allowedMcpServers?: string[];
+  excludedMcpServers?: string[];
   noBrowser?: boolean;
   summarizeToolOutput?: Record<string, SummarizeToolOutputSettings>;
   folderTrustFeature?: boolean;
@@ -320,6 +323,8 @@ export interface ConfigParameters {
   generationConfig?: Partial<ContentGeneratorConfig>;
   cliVersion?: string;
   loadMemoryFromIncludeDirectories?: boolean;
+  importFormat?: 'tree' | 'flat';
+  discoveryMaxDirs?: number;
   chatRecording?: boolean;
   // Web search providers
   webSearch?: {
@@ -338,7 +343,6 @@ export interface ConfigParameters {
   shouldUseNodePtyShell?: boolean;
   skipNextSpeakerCheck?: boolean;
   shellExecutionConfig?: ShellExecutionConfig;
-  extensionManagement?: boolean;
   skipLoopDetection?: boolean;
   vlmSwitchMode?: string;
   truncateToolOutputThreshold?: number;
@@ -391,6 +395,7 @@ export class Config {
   private toolRegistry!: ToolRegistry;
   private promptRegistry!: PromptRegistry;
   private subagentManager!: SubagentManager;
+  private extensionManager!: ExtensionManager;
   private skillManager!: SkillManager;
   private fileSystemService: FileSystemService;
   private contentGeneratorConfig!: ContentGeneratorConfig;
@@ -413,6 +418,8 @@ export class Config {
   private readonly toolCallCommand: string | undefined;
   private readonly mcpServerCommand: string | undefined;
   private mcpServers: Record<string, MCPServerConfig> | undefined;
+  private readonly allowedMcpServers?: string[];
+  private readonly excludedMcpServers?: string[];
   private sessionSubagents: SubagentConfig[];
   private userMemory: string;
   private sdkMode: boolean;
@@ -435,11 +442,12 @@ export class Config {
   private gitService: GitService | undefined = undefined;
   private sessionService: SessionService | undefined = undefined;
   private chatRecordingService: ChatRecordingService | undefined = undefined;
+  private extensionContextFilePaths: string[] = [];
   private readonly checkpointing: boolean;
   private readonly proxy: string | undefined;
   private readonly cwd: string;
   private readonly bugCommand: BugCommandSettings | undefined;
-  private readonly extensionContextFilePaths: string[];
+  private readonly outputLanguageFilePath?: string;
   private readonly noBrowser: boolean;
   private readonly folderTrustFeature: boolean;
   private readonly folderTrust: boolean;
@@ -449,11 +457,8 @@ export class Config {
   private readonly maxSessionTurns: number;
   private readonly sessionTokenLimit: number;
   private readonly listExtensions: boolean;
-  private readonly _extensions: GeminiCLIExtension[];
-  private readonly _blockedMcpServers: Array<{
-    name: string;
-    extensionName: string;
-  }>;
+  private readonly overrideExtensions?: string[];
+
   fallbackModelHandler?: FallbackModelHandler;
   private quotaErrorOccurred: boolean = false;
   private readonly summarizeToolOutput:
@@ -464,6 +469,8 @@ export class Config {
   private readonly experimentalSkills: boolean = false;
   private readonly chatRecordingEnabled: boolean;
   private readonly loadMemoryFromIncludeDirectories: boolean = false;
+  private readonly importFormat: 'tree' | 'flat';
+  private readonly discoveryMaxDirs: number;
   private readonly webSearch?: {
     provider: Array<{
       type: 'tavily' | 'google' | 'dashscope';
@@ -480,7 +487,6 @@ export class Config {
   private readonly shouldUseNodePtyShell: boolean;
   private readonly skipNextSpeakerCheck: boolean;
   private shellExecutionConfig: ShellExecutionConfig;
-  private readonly extensionManagement: boolean = true;
   private readonly skipLoopDetection: boolean;
   private readonly skipStartupContext: boolean;
   private readonly vlmSwitchMode: string | undefined;
@@ -521,6 +527,8 @@ export class Config {
     this.toolCallCommand = params.toolCallCommand;
     this.mcpServerCommand = params.mcpServerCommand;
     this.mcpServers = params.mcpServers;
+    this.allowedMcpServers = params.allowedMcpServers;
+    this.excludedMcpServers = params.excludedMcpServers;
     this.sessionSubagents = params.sessionSubagents ?? [];
     this.sdkMode = params.sdkMode ?? false;
     this.userMemory = params.userMemory ?? '';
@@ -543,6 +551,7 @@ export class Config {
       email: 'qwen-coder@alibabacloud.com',
     };
     this.usageStatisticsEnabled = params.usageStatisticsEnabled ?? true;
+    this.outputLanguageFilePath = params.outputLanguageFilePath;
 
     this.fileFiltering = {
       respectGitIgnore: params.fileFiltering?.respectGitIgnore ?? true,
@@ -556,15 +565,13 @@ export class Config {
     this.cwd = params.cwd ?? process.cwd();
     this.fileDiscoveryService = params.fileDiscoveryService ?? null;
     this.bugCommand = params.bugCommand;
-    this.extensionContextFilePaths = params.extensionContextFilePaths ?? [];
     this.maxSessionTurns = params.maxSessionTurns ?? -1;
     this.sessionTokenLimit = params.sessionTokenLimit ?? -1;
     this.experimentalZedIntegration =
       params.experimentalZedIntegration ?? false;
     this.experimentalSkills = params.experimentalSkills ?? false;
     this.listExtensions = params.listExtensions ?? false;
-    this._extensions = params.extensions ?? [];
-    this._blockedMcpServers = params.blockedMcpServers ?? [];
+    this.overrideExtensions = params.overrideExtensions;
     this.noBrowser = params.noBrowser ?? false;
     this.summarizeToolOutput = params.summarizeToolOutput;
     this.folderTrustFeature = params.folderTrustFeature ?? false;
@@ -583,6 +590,8 @@ export class Config {
 
     this.loadMemoryFromIncludeDirectories =
       params.loadMemoryFromIncludeDirectories ?? false;
+    this.importFormat = params.importFormat ?? 'tree';
+    this.discoveryMaxDirs = params.discoveryMaxDirs ?? 200;
     this.chatCompression = params.chatCompression;
     this.interactive = params.interactive ?? false;
     this.trustedFolder = params.trustedFolder;
@@ -608,7 +617,6 @@ export class Config {
       params.truncateToolOutputLines ?? DEFAULT_TRUNCATE_TOOL_OUTPUT_LINES;
     this.enableToolOutputTruncation = params.enableToolOutputTruncation ?? true;
     this.useSmartEdit = params.useSmartEdit ?? false;
-    this.extensionManagement = params.extensionManagement ?? true;
     this.channel = params.channel;
     this.storage = new Storage(this.targetDir);
     this.vlmSwitchMode = params.vlmSwitchMode;
@@ -656,6 +664,23 @@ export class Config {
       this.subagentManager.loadSessionSubagents(this.sessionSubagents);
     }
 
+    this.extensionManager = new ExtensionManager({
+      workspaceDir: this.targetDir,
+      enabledExtensionOverrides: this.overrideExtensions,
+      config: this,
+      isWorkspaceTrusted: this.isTrustedFolder(),
+    });
+
+    await this.extensionManager.refreshCache();
+    const activeExtensions = await this.extensionManager
+      .getLoadedExtensions()
+      .filter((e) => e.isActive);
+    this.extensionContextFilePaths = activeExtensions.flatMap(
+      (e) => e.contextFiles,
+    );
+
+    await this.refreshHierarchicalMemory();
+
     this.toolRegistry = await this.createToolRegistry(
       options?.sendSdkMcpMessage,
     );
@@ -665,6 +690,24 @@ export class Config {
     logStartSession(this, new StartSessionEvent(this));
   }
 
+  async refreshHierarchicalMemory(): Promise<void> {
+    const { memoryContent, fileCount } = await loadServerHierarchicalMemory(
+      this.getWorkingDir(),
+      this.shouldLoadMemoryFromIncludeDirectories()
+        ? this.getWorkspaceContext().getDirectories()
+        : [],
+      this.getDebugMode(),
+      this.getFileService(),
+      this.getExtensionContextFilePaths(),
+      this.getFolderTrust(),
+      this.getImportFormat(),
+      this.getFileFilteringOptions(),
+      this.getDiscoveryMaxDirs(),
+    );
+    this.setUserMemory(memoryContent);
+    this.setGeminiMdFileCount(fileCount);
+  }
+
   getContentGenerator(): ContentGenerator {
     return this.contentGenerator;
   }
@@ -763,6 +806,14 @@ export class Config {
     return this.loadMemoryFromIncludeDirectories;
   }
 
+  getImportFormat(): 'tree' | 'flat' {
+    return this.importFormat;
+  }
+
+  getDiscoveryMaxDirs(): number {
+    return this.discoveryMaxDirs;
+  }
+
   getContentGeneratorConfig(): ContentGeneratorConfig {
     return this.contentGeneratorConfig;
   }
@@ -870,7 +921,14 @@ export class Config {
   }
 
   getExcludeTools(): string[] | undefined {
-    return this.excludeTools;
+    const allExcludeTools = new Set(this.excludeTools || []);
+    const extensions = this.getActiveExtensions();
+    for (const extension of extensions) {
+      for (const tool of extension.config.excludeTools || []) {
+        allExcludeTools.add(tool);
+      }
+    }
+    return [...allExcludeTools];
   }
 
   getToolDiscoveryCommand(): string | undefined {
@@ -886,7 +944,37 @@ export class Config {
   }
 
   getMcpServers(): Record<string, MCPServerConfig> | undefined {
-    return this.mcpServers;
+    let mcpServers = { ...(this.mcpServers || {}) };
+    const extensions = this.getActiveExtensions();
+    for (const extension of extensions) {
+      Object.entries(extension.config.mcpServers || {}).forEach(
+        ([key, server]) => {
+          if (mcpServers[key]) return;
+          mcpServers[key] = {
+            ...server,
+            extensionName: extension.config.name,
+          };
+        },
+      );
+    }
+
+    if (this.allowedMcpServers) {
+      mcpServers = Object.fromEntries(
+        Object.entries(mcpServers).filter(([key]) =>
+          this.allowedMcpServers?.includes(key),
+        ),
+      );
+    }
+
+    if (this.excludedMcpServers) {
+      mcpServers = Object.fromEntries(
+        Object.entries(mcpServers).filter(
+          ([key]) => !this.excludedMcpServers?.includes(key),
+        ),
+      );
+    }
+
+    return mcpServers;
   }
 
   addMcpServers(servers: Record<string, MCPServerConfig>): void {
@@ -1065,7 +1153,10 @@ export class Config {
   }
 
   getExtensionContextFilePaths(): string[] {
-    return this.extensionContextFilePaths;
+    return [
+      ...this.extensionContextFilePaths,
+      ...(this.outputLanguageFilePath ? [this.outputLanguageFilePath] : []),
+    ];
   }
 
   getExperimentalZedIntegration(): boolean {
@@ -1080,16 +1171,54 @@ export class Config {
     return this.listExtensions;
   }
 
-  getExtensionManagement(): boolean {
-    return this.extensionManagement;
+  getExtensionManager(): ExtensionManager {
+    return this.extensionManager;
   }
 
-  getExtensions(): GeminiCLIExtension[] {
-    return this._extensions;
+  getExtensions(): Extension[] {
+    const extensions = this.extensionManager.getLoadedExtensions();
+    if (this.overrideExtensions) {
+      return extensions.filter((e) =>
+        this.overrideExtensions?.includes(e.name),
+      );
+    } else {
+      return extensions;
+    }
+  }
+
+  getActiveExtensions(): Extension[] {
+    return this.getExtensions().filter((e) => e.isActive);
   }
 
   getBlockedMcpServers(): Array<{ name: string; extensionName: string }> {
-    return this._blockedMcpServers;
+    const mcpServers = { ...(this.mcpServers || {}) };
+    const extensions = this.getActiveExtensions();
+    for (const extension of extensions) {
+      Object.entries(extension.config.mcpServers || {}).forEach(
+        ([key, server]) => {
+          if (mcpServers[key]) return;
+          mcpServers[key] = {
+            ...server,
+            extensionName: extension.config.name,
+          };
+        },
+      );
+    }
+    const blockedMcpServers: Array<{ name: string; extensionName: string }> =
+      [];
+
+    if (this.allowedMcpServers) {
+      Object.entries(mcpServers).forEach(([key, server]) => {
+        const isAllowed = this.allowedMcpServers?.includes(key);
+        if (!isAllowed) {
+          blockedMcpServers.push({
+            name: key,
+            extensionName: server.extensionName || '',
+          });
+        }
+      });
+    }
+    return blockedMcpServers;
   }
 
   getNoBrowser(): boolean {

packages/core/src/extension/claude-converter.test.ts

@@ -0,0 +1,121 @@
+/**
+ * @license
+ * Copyright 2025 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+import { describe, it, expect } from 'vitest';
+import {
+  convertClaudeToQwenConfig,
+  mergeClaudeConfigs,
+  isClaudePluginConfig,
+  type ClaudePluginConfig,
+  type ClaudeMarketplacePluginConfig,
+} from './claude-converter.js';
+
+describe('convertClaudeToQwenConfig', () => {
+  it('should convert basic Claude config', () => {
+    const claudeConfig: ClaudePluginConfig = {
+      name: 'claude-plugin',
+      version: '1.0.0',
+    };
+
+    const result = convertClaudeToQwenConfig(claudeConfig);
+
+    expect(result.name).toBe('claude-plugin');
+    expect(result.version).toBe('1.0.0');
+  });
+
+  it('should convert config with basic fields only', () => {
+    const claudeConfig: ClaudePluginConfig = {
+      name: 'full-plugin',
+      version: '1.0.0',
+      commands: 'commands',
+      agents: ['agents/agent1.md'],
+      skills: ['skills/skill1'],
+    };
+
+    const result = convertClaudeToQwenConfig(claudeConfig);
+
+    // Commands, skills, agents are collected as directories, not in config
+    expect(result.name).toBe('full-plugin');
+    expect(result.version).toBe('1.0.0');
+    expect(result.mcpServers).toBeUndefined();
+  });
+
+  it('should throw error for missing name', () => {
+    const invalidConfig = {
+      version: '1.0.0',
+    } as ClaudePluginConfig;
+
+    expect(() => convertClaudeToQwenConfig(invalidConfig)).toThrow();
+  });
+});
+
+describe('mergeClaudeConfigs', () => {
+  it('should merge marketplace and plugin configs', () => {
+    const marketplacePlugin: ClaudeMarketplacePluginConfig = {
+      name: 'marketplace-name',
+      version: '2.0.0',
+      source: 'github:org/repo',
+      description: 'From marketplace',
+    };
+
+    const pluginConfig: ClaudePluginConfig = {
+      name: 'plugin-name',
+      version: '1.0.0',
+      commands: 'commands',
+    };
+
+    const merged = mergeClaudeConfigs(marketplacePlugin, pluginConfig);
+
+    // Marketplace takes precedence
+    expect(merged.name).toBe('marketplace-name');
+    expect(merged.version).toBe('2.0.0');
+    expect(merged.description).toBe('From marketplace');
+    // Plugin fields preserved
+    expect(merged.commands).toBe('commands');
+  });
+
+  it('should work with strict=false and no plugin config', () => {
+    const marketplacePlugin: ClaudeMarketplacePluginConfig = {
+      name: 'standalone',
+      version: '1.0.0',
+      source: 'local',
+      strict: false,
+      commands: 'commands',
+    };
+
+    const merged = mergeClaudeConfigs(marketplacePlugin);
+
+    expect(merged.name).toBe('standalone');
+    expect(merged.commands).toBe('commands');
+  });
+
+  it('should throw error for strict mode without plugin config', () => {
+    const marketplacePlugin: ClaudeMarketplacePluginConfig = {
+      name: 'strict-plugin',
+      version: '1.0.0',
+      source: 'github:org/repo',
+      strict: true,
+    };
+
+    expect(() => mergeClaudeConfigs(marketplacePlugin)).toThrow();
+  });
+});
+
+describe('isClaudePluginConfig', () => {
+  it('should identify Claude plugin directory', () => {
+    const extensionDir = '/tmp/test-extension';
+    const marketplace = {
+      marketplaceSource: 'https://test.com',
+      pluginName: 'test-plugin',
+    };
+
+    // This will check if marketplace.json exists and contains the plugin
+    // Note: In real usage, this requires actual file system setup
+    expect(typeof isClaudePluginConfig(extensionDir, marketplace)).toBe(
+      'boolean',
+    );
+  });
+});

packages/core/src/extension/claude-converter.ts

@@ -0,0 +1,500 @@
+/**
+ * @license
+ * Copyright 2025 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+/**
+ * Converter for Claude Code plugins to Qwen Code format.
+ */
+import * as fs from 'node:fs';
+import * as path from 'node:path';
+import { glob } from 'glob';
+import type { ExtensionConfig } from './extensionManager.js';
+import { ExtensionStorage } from './storage.js';
+import type { MCPServerConfig } from '../config/config.js';
+
+export interface ClaudePluginConfig {
+  name: string;
+  version: string;
+  description?: string;
+  author?: { name?: string; email?: string; url?: string };
+  homepage?: string;
+  repository?: string;
+  license?: string;
+  keywords?: string[];
+  commands?: string | string[];
+  agents?: string | string[];
+  skills?: string | string[];
+  hooks?: string;
+  mcpServers?: string | Record<string, MCPServerConfig>;
+  outputStyles?: string | string[];
+  lspServers?: string;
+}
+
+export type ClaudePluginSource =
+  | { source: 'github'; repo: string }
+  | { source: 'url'; url: string };
+
+export interface ClaudeMarketplacePluginConfig extends ClaudePluginConfig {
+  source: string | ClaudePluginSource;
+  category?: string;
+  strict?: boolean;
+  tags?: string[];
+}
+
+export interface ClaudeMarketplaceConfig {
+  name: string;
+  owner: { name: string; email: string };
+  plugins: ClaudeMarketplacePluginConfig[];
+  metadata?: { description?: string; version?: string; pluginRoot?: string };
+}
+
+/**
+ * Converts a Claude plugin config to Qwen Code format.
+ * @param claudeConfig Claude plugin configuration
+ * @returns Qwen ExtensionConfig
+ */
+export function convertClaudeToQwenConfig(
+  claudeConfig: ClaudePluginConfig,
+): ExtensionConfig {
+  // Validate required fields
+  if (!claudeConfig.name || !claudeConfig.version) {
+    throw new Error('Claude plugin config must have name and version fields');
+  }
+
+  // Parse MCP servers
+  let mcpServers: Record<string, MCPServerConfig> | undefined;
+  if (claudeConfig.mcpServers) {
+    if (typeof claudeConfig.mcpServers === 'string') {
+      // TODO: Load from file path
+      console.warn(
+        `[Claude Converter] MCP servers path not yet supported: ${claudeConfig.mcpServers}`,
+      );
+    } else {
+      mcpServers = claudeConfig.mcpServers;
+    }
+  }
+
+  // Warn about unsupported fields
+  if (claudeConfig.hooks) {
+    console.warn(
+      `[Claude Converter] Hooks are not yet supported in ${claudeConfig.name}`,
+    );
+  }
+  if (claudeConfig.outputStyles) {
+    console.warn(
+      `[Claude Converter] Output styles are not yet supported in ${claudeConfig.name}`,
+    );
+  }
+  if (claudeConfig.lspServers) {
+    console.warn(
+      `[Claude Converter] LSP servers are not yet supported in ${claudeConfig.name}`,
+    );
+  }
+
+  // Direct field mapping - commands, skills, agents will be collected as folders
+  return {
+    name: claudeConfig.name,
+    version: claudeConfig.version,
+    mcpServers,
+  };
+}
+
+/**
+ * Converts a complete Claude plugin package to Qwen Code format.
+ * Creates a new temporary directory with:
+ * 1. Converted qwen-extension.json
+ * 2. Commands, skills, and agents collected to respective folders
+ * 3. MCP servers resolved from JSON files if needed
+ * 4. All other files preserved
+ *
+ * @param extensionDir Path to the Claude plugin directory
+ * @param marketplace Marketplace information for loading marketplace.json
+ * @returns Object containing converted config and the temporary directory path
+ */
+export async function convertClaudePluginPackage(
+  extensionDir: string,
+  marketplace: { marketplaceSource: string; pluginName: string },
+): Promise<{ config: ExtensionConfig; convertedDir: string }> {
+  // Step 1: Load marketplace.json
+  const marketplaceJsonPath = path.join(
+    extensionDir,
+    '.claude-plugin',
+    'marketplace.json',
+  );
+  if (!fs.existsSync(marketplaceJsonPath)) {
+    throw new Error(
+      `Marketplace configuration not found at ${marketplaceJsonPath}`,
+    );
+  }
+
+  const marketplaceContent = fs.readFileSync(marketplaceJsonPath, 'utf-8');
+  const marketplaceConfig: ClaudeMarketplaceConfig =
+    JSON.parse(marketplaceContent);
+
+  // Find the target plugin in marketplace
+  const marketplacePlugin = marketplaceConfig.plugins.find(
+    (p) => p.name === marketplace.pluginName,
+  );
+  if (!marketplacePlugin) {
+    throw new Error(
+      `Plugin ${marketplace.pluginName} not found in marketplace.json`,
+    );
+  }
+
+  // Step 2: Resolve plugin source directory based on source field
+  const source = marketplacePlugin.source;
+  let pluginSourceDir: string;
+
+  if (typeof source === 'string') {
+    // Check if it's a URL (online path)
+    if (source.startsWith('http://') || source.startsWith('https://')) {
+      throw new Error(
+        `Online plugin sources are not supported in convertClaudePluginPackage. ` +
+          `Plugin ${marketplace.pluginName} has source: ${source}. ` +
+          `This should be downloaded and resolved before calling this function.`,
+      );
+    }
+    // Relative path within marketplace directory
+    const marketplaceDir = marketplaceConfig.metadata?.pluginRoot
+      ? path.join(extensionDir, marketplaceConfig.metadata.pluginRoot)
+      : extensionDir;
+    pluginSourceDir = path.join(marketplaceDir, source);
+  } else if (source.source === 'github' || source.source === 'url') {
+    throw new Error(
+      `Online plugin sources (github/url) are not supported in convertClaudePluginPackage. ` +
+        `Plugin ${marketplace.pluginName} has source type: ${source.source}. ` +
+        `This should be downloaded and resolved before calling this function.`,
+    );
+  } else {
+    throw new Error(
+      `Unsupported plugin source type for ${marketplace.pluginName}: ${JSON.stringify(source)}`,
+    );
+  }
+
+  if (!fs.existsSync(pluginSourceDir)) {
+    throw new Error(`Plugin source directory not found: ${pluginSourceDir}`);
+  }
+
+  // Step 3: Load and merge plugin.json if exists (based on strict mode)
+  const strict = marketplacePlugin.strict ?? true;
+  let mergedConfig: ClaudePluginConfig;
+
+  if (strict) {
+    const pluginJsonPath = path.join(
+      pluginSourceDir,
+      '.claude-plugin',
+      'plugin.json',
+    );
+    if (!fs.existsSync(pluginJsonPath)) {
+      throw new Error(`Strict mode requires plugin.json at ${pluginJsonPath}`);
+    }
+    const pluginContent = fs.readFileSync(pluginJsonPath, 'utf-8');
+    const pluginConfig: ClaudePluginConfig = JSON.parse(pluginContent);
+    mergedConfig = mergeClaudeConfigs(marketplacePlugin, pluginConfig);
+  } else {
+    mergedConfig = marketplacePlugin as ClaudePluginConfig;
+  }
+
+  // Step 4: Resolve MCP servers from JSON files if needed
+  if (mergedConfig.mcpServers && typeof mergedConfig.mcpServers === 'string') {
+    const mcpServersPath = path.isAbsolute(mergedConfig.mcpServers)
+      ? mergedConfig.mcpServers
+      : path.join(pluginSourceDir, mergedConfig.mcpServers);
+
+    if (fs.existsSync(mcpServersPath)) {
+      try {
+        const mcpContent = fs.readFileSync(mcpServersPath, 'utf-8');
+        mergedConfig.mcpServers = JSON.parse(mcpContent) as Record<
+          string,
+          MCPServerConfig
+        >;
+      } catch (error) {
+        console.warn(
+          `Failed to parse MCP servers file ${mcpServersPath}: ${error instanceof Error ? error.message : String(error)}`,
+        );
+      }
+    }
+  }
+
+  // Step 5: Create temporary directory for converted extension
+  const tmpDir = await ExtensionStorage.createTmpDir();
+
+  try {
+    // Step 6: Copy plugin files to temporary directory
+    await copyDirectory(pluginSourceDir, tmpDir);
+
+    // Step 7: Collect commands to commands folder
+    if (mergedConfig.commands) {
+      const commandsDestDir = path.join(tmpDir, 'commands');
+      await collectResources(
+        mergedConfig.commands,
+        pluginSourceDir,
+        commandsDestDir,
+      );
+    }
+
+    // Step 8: Collect skills to skills folder
+    if (mergedConfig.skills) {
+      const skillsDestDir = path.join(tmpDir, 'skills');
+      await collectResources(
+        mergedConfig.skills,
+        pluginSourceDir,
+        skillsDestDir,
+      );
+    }
+
+    // Step 9: Collect agents to agents folder
+    if (mergedConfig.agents) {
+      const agentsDestDir = path.join(tmpDir, 'agents');
+      await collectResources(
+        mergedConfig.agents,
+        pluginSourceDir,
+        agentsDestDir,
+      );
+    }
+
+    // Step 10: Convert to Qwen format config
+    const qwenConfig = convertClaudeToQwenConfig(mergedConfig);
+
+    // Step 11: Write qwen-extension.json
+    const qwenConfigPath = path.join(tmpDir, 'qwen-extension.json');
+    fs.writeFileSync(
+      qwenConfigPath,
+      JSON.stringify(qwenConfig, null, 2),
+      'utf-8',
+    );
+
+    return {
+      config: qwenConfig,
+      convertedDir: tmpDir,
+    };
+  } catch (error) {
+    // Clean up temporary directory on error
+    try {
+      fs.rmSync(tmpDir, { recursive: true, force: true });
+    } catch {
+      // Ignore cleanup errors
+    }
+    throw error;
+  }
+}
+
+/**
+ * Recursively copies a directory and its contents.
+ * @param source Source directory path
+ * @param destination Destination directory path
+ */
+async function copyDirectory(
+  source: string,
+  destination: string,
+): Promise<void> {
+  // Create destination directory if it doesn't exist
+  if (!fs.existsSync(destination)) {
+    fs.mkdirSync(destination, { recursive: true });
+  }
+
+  const entries = fs.readdirSync(source, { withFileTypes: true });
+
+  for (const entry of entries) {
+    const sourcePath = path.join(source, entry.name);
+    const destPath = path.join(destination, entry.name);
+
+    if (entry.isDirectory()) {
+      await copyDirectory(sourcePath, destPath);
+    } else {
+      fs.copyFileSync(sourcePath, destPath);
+    }
+  }
+}
+
+/**
+ * Collects resources (commands, skills, agents) to a destination folder.
+ * If a resource is already in the destination folder, it will be skipped.
+ * @param resourcePaths String or array of resource paths
+ * @param pluginRoot Root directory of the plugin
+ * @param destDir Destination directory for collected resources
+ */
+async function collectResources(
+  resourcePaths: string | string[],
+  pluginRoot: string,
+  destDir: string,
+): Promise<void> {
+  const paths = Array.isArray(resourcePaths) ? resourcePaths : [resourcePaths];
+
+  // Create destination directory
+  if (!fs.existsSync(destDir)) {
+    fs.mkdirSync(destDir, { recursive: true });
+  }
+
+  // Get the destination folder name (e.g., 'commands', 'skills', 'agents')
+  const destFolderName = path.basename(destDir);
+
+  for (const resourcePath of paths) {
+    const resolvedPath = path.isAbsolute(resourcePath)
+      ? resourcePath
+      : path.join(pluginRoot, resourcePath);
+
+    if (!fs.existsSync(resolvedPath)) {
+      console.warn(`Resource path not found: ${resolvedPath}`);
+      continue;
+    }
+
+    const stat = fs.statSync(resolvedPath);
+
+    if (stat.isDirectory()) {
+      // If it's a directory, check if it's already the destination folder
+      const dirName = path.basename(resolvedPath);
+      const parentDir = path.dirname(resolvedPath);
+
+      // If the directory is already named as the destination folder (e.g., 'commands')
+      // and it's at the plugin root level, skip it
+      if (dirName === destFolderName && parentDir === pluginRoot) {
+        console.log(
+          `Skipping ${resolvedPath} as it's already in the correct location`,
+        );
+        continue;
+      }
+
+      // Copy all files from the directory
+      const files = await glob('**/*', {
+        cwd: resolvedPath,
+        nodir: true,
+        dot: false,
+      });
+
+      for (const file of files) {
+        const srcFile = path.join(resolvedPath, file);
+        const destFile = path.join(destDir, file);
+
+        // Ensure parent directory exists
+        const destFileDir = path.dirname(destFile);
+        if (!fs.existsSync(destFileDir)) {
+          fs.mkdirSync(destFileDir, { recursive: true });
+        }
+
+        fs.copyFileSync(srcFile, destFile);
+      }
+    } else {
+      // If it's a file, check if it's already in the destination folder
+      const relativePath = path.relative(pluginRoot, resolvedPath);
+
+      // Check if the file path starts with the destination folder name
+      // e.g., 'commands/test1.md' or 'commands/me/test.md' should be skipped
+      const segments = relativePath.split(path.sep);
+      if (segments.length > 0 && segments[0] === destFolderName) {
+        console.log(
+          `Skipping ${resolvedPath} as it's already in ${destFolderName}/`,
+        );
+        continue;
+      }
+
+      // Copy the file to destination
+      const fileName = path.basename(resolvedPath);
+      const destFile = path.join(destDir, fileName);
+      fs.copyFileSync(resolvedPath, destFile);
+    }
+  }
+}
+
+/**
+ * Merges marketplace plugin config with the actual plugin.json config.
+ * Marketplace config takes precedence for conflicting fields.
+ * @param marketplacePlugin Marketplace plugin definition
+ * @param pluginConfig Actual plugin.json config (optional if strict=false)
+ * @returns Merged Claude plugin config
+ */
+export function mergeClaudeConfigs(
+  marketplacePlugin: ClaudeMarketplacePluginConfig,
+  pluginConfig?: ClaudePluginConfig,
+): ClaudePluginConfig {
+  if (!pluginConfig && marketplacePlugin.strict !== false) {
+    throw new Error(
+      `Plugin ${marketplacePlugin.name} requires plugin.json (strict mode)`,
+    );
+  }
+
+  // Start with plugin.json config (if exists)
+  const merged: ClaudePluginConfig = pluginConfig
+    ? { ...pluginConfig }
+    : {
+        name: marketplacePlugin.name,
+        version: '1.0.0', // Default version if not in marketplace
+      };
+
+  // Overlay marketplace config (takes precedence)
+  if (marketplacePlugin.name) merged.name = marketplacePlugin.name;
+  if (marketplacePlugin.version) merged.version = marketplacePlugin.version;
+  if (marketplacePlugin.description)
+    merged.description = marketplacePlugin.description;
+  if (marketplacePlugin.author) merged.author = marketplacePlugin.author;
+  if (marketplacePlugin.homepage) merged.homepage = marketplacePlugin.homepage;
+  if (marketplacePlugin.repository)
+    merged.repository = marketplacePlugin.repository;
+  if (marketplacePlugin.license) merged.license = marketplacePlugin.license;
+  if (marketplacePlugin.keywords) merged.keywords = marketplacePlugin.keywords;
+  if (marketplacePlugin.commands) merged.commands = marketplacePlugin.commands;
+  if (marketplacePlugin.agents) merged.agents = marketplacePlugin.agents;
+  if (marketplacePlugin.skills) merged.skills = marketplacePlugin.skills;
+  if (marketplacePlugin.hooks) merged.hooks = marketplacePlugin.hooks;
+  if (marketplacePlugin.mcpServers)
+    merged.mcpServers = marketplacePlugin.mcpServers;
+  if (marketplacePlugin.outputStyles)
+    merged.outputStyles = marketplacePlugin.outputStyles;
+  if (marketplacePlugin.lspServers)
+    merged.lspServers = marketplacePlugin.lspServers;
+
+  return merged;
+}
+
+/**
+ * Checks if a config object is in Claude plugin format.
+ * @param config Configuration object to check
+ * @returns true if config appears to be Claude format
+ */
+export function isClaudePluginConfig(
+  extensionDir: string,
+  marketplace: { marketplaceSource: string; pluginName: string },
+) {
+  const marketplaceConfigFilePath = path.join(
+    extensionDir,
+    '.claude-plugin/marketplace.json',
+  );
+  if (!fs.existsSync(marketplaceConfigFilePath)) {
+    return false;
+  }
+
+  const marketplaceConfigContent = fs.readFileSync(
+    marketplaceConfigFilePath,
+    'utf-8',
+  );
+  const marketplaceConfig = JSON.parse(marketplaceConfigContent);
+
+  if (typeof marketplaceConfig !== 'object' || marketplaceConfig === null) {
+    return false;
+  }
+
+  const marketplaceConfigObj = marketplaceConfig as Record<string, unknown>;
+
+  // Must have name and owner
+  if (
+    typeof marketplaceConfigObj['name'] !== 'string' ||
+    typeof marketplaceConfigObj['owner'] !== 'object'
+  ) {
+    return false;
+  }
+
+  if (!Array.isArray(marketplaceConfigObj['plugins'])) {
+    return false;
+  }
+
+  const marketplacePluginObj = marketplaceConfigObj['plugins'].find(
+    (plugin: ClaudeMarketplacePluginConfig) =>
+      plugin.name === marketplace.pluginName,
+  );
+
+  if (!marketplacePluginObj) return false;
+
+  return true;
+}

packages/core/src/extension/extensionManager.test.ts

@@ -0,0 +1,832 @@
+/**
+ * @license
+ * Copyright 2025 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+import { vi, describe, it, expect, beforeEach, afterEach } from 'vitest';
+import * as fs from 'node:fs';
+import * as os from 'node:os';
+import * as path from 'node:path';
+import {
+  INSTALL_METADATA_FILENAME,
+  EXTENSIONS_CONFIG_FILENAME,
+} from './variables.js';
+import { QWEN_DIR } from '../config/storage.js';
+import {
+  ExtensionManager,
+  SettingScope,
+  type ExtensionManagerOptions,
+  validateName,
+  getExtensionId,
+  hashValue,
+  extensionConsentString,
+  maybeRequestConsentOrFail,
+  parseInstallSource,
+  type ExtensionConfig,
+} from './extensionManager.js';
+import type { MCPServerConfig, ExtensionInstallMetadata } from '../index.js';
+
+const mockGit = {
+  clone: vi.fn(),
+  getRemotes: vi.fn(),
+  fetch: vi.fn(),
+  checkout: vi.fn(),
+  listRemote: vi.fn(),
+  revparse: vi.fn(),
+  path: vi.fn(),
+};
+
+vi.mock('simple-git', () => ({
+  simpleGit: vi.fn((path: string) => {
+    mockGit.path.mockReturnValue(path);
+    return mockGit;
+  }),
+}));
+
+vi.mock('./github.js', async (importOriginal) => {
+  const actual = await importOriginal<typeof import('./github.js')>();
+  return {
+    ...actual,
+    downloadFromGitHubRelease: vi
+      .fn()
+      .mockRejectedValue(new Error('Mocked GitHub release download failure')),
+  };
+});
+
+const mockHomedir = vi.hoisted(() => vi.fn());
+vi.mock('os', async (importOriginal) => {
+  const mockedOs = await importOriginal<typeof os>();
+  return {
+    ...mockedOs,
+    homedir: mockHomedir,
+  };
+});
+
+const mockLogExtensionEnable = vi.hoisted(() => vi.fn());
+const mockLogExtensionInstallEvent = vi.hoisted(() => vi.fn());
+const mockLogExtensionUninstall = vi.hoisted(() => vi.fn());
+const mockLogExtensionDisable = vi.hoisted(() => vi.fn());
+const mockLogExtensionUpdateEvent = vi.hoisted(() => vi.fn());
+vi.mock('../telemetry/loggers.js', () => ({
+  logExtensionEnable: mockLogExtensionEnable,
+  logExtensionUpdateEvent: mockLogExtensionUpdateEvent,
+}));
+
+vi.mock('../index.js', async (importOriginal) => {
+  const actual = await importOriginal<typeof import('../index.js')>();
+  return {
+    ...actual,
+    logExtensionEnable: mockLogExtensionEnable,
+    logExtensionInstallEvent: mockLogExtensionInstallEvent,
+    logExtensionUninstall: mockLogExtensionUninstall,
+    logExtensionDisable: mockLogExtensionDisable,
+  };
+});
+
+const EXTENSIONS_DIRECTORY_NAME = path.join(QWEN_DIR, 'extensions');
+
+function createExtension({
+  extensionsDir = 'extensions-dir',
+  name = 'my-extension',
+  version = '1.0.0',
+  addContextFile = false,
+  contextFileName = undefined as string | undefined,
+  mcpServers = {} as Record<string, MCPServerConfig>,
+  installMetadata = undefined as ExtensionInstallMetadata | undefined,
+} = {}): string {
+  const extDir = path.join(extensionsDir, name);
+  fs.mkdirSync(extDir, { recursive: true });
+  fs.writeFileSync(
+    path.join(extDir, EXTENSIONS_CONFIG_FILENAME),
+    JSON.stringify({ name, version, contextFileName, mcpServers }),
+  );
+
+  if (addContextFile) {
+    fs.writeFileSync(path.join(extDir, 'QWEN.md'), 'context');
+  }
+
+  if (contextFileName) {
+    fs.writeFileSync(path.join(extDir, contextFileName), 'context');
+  }
+
+  if (installMetadata) {
+    fs.writeFileSync(
+      path.join(extDir, INSTALL_METADATA_FILENAME),
+      JSON.stringify(installMetadata),
+    );
+  }
+  return extDir;
+}
+
+describe('extension tests', () => {
+  let tempHomeDir: string;
+  let tempWorkspaceDir: string;
+  let userExtensionsDir: string;
+
+  beforeEach(() => {
+    tempHomeDir = fs.mkdtempSync(
+      path.join(os.tmpdir(), 'qwen-code-test-home-'),
+    );
+    tempWorkspaceDir = fs.mkdtempSync(
+      path.join(tempHomeDir, 'qwen-code-test-workspace-'),
+    );
+    userExtensionsDir = path.join(tempHomeDir, EXTENSIONS_DIRECTORY_NAME);
+    fs.mkdirSync(userExtensionsDir, { recursive: true });
+
+    mockHomedir.mockReturnValue(tempHomeDir);
+    vi.spyOn(process, 'cwd').mockReturnValue(tempWorkspaceDir);
+    Object.values(mockGit).forEach((fn) => fn.mockReset());
+  });
+
+  afterEach(() => {
+    fs.rmSync(tempHomeDir, { recursive: true, force: true });
+    vi.restoreAllMocks();
+  });
+
+  function createExtensionManager(
+    options: Partial<ExtensionManagerOptions> = {},
+  ): ExtensionManager {
+    return new ExtensionManager({
+      workspaceDir: tempWorkspaceDir,
+      isWorkspaceTrusted: true,
+      ...options,
+    });
+  }
+
+  describe('loadExtension', () => {
+    it('should include extension path in loaded extension', async () => {
+      const extensionDir = path.join(userExtensionsDir, 'test-extension');
+      fs.mkdirSync(extensionDir, { recursive: true });
+
+      createExtension({
+        extensionsDir: userExtensionsDir,
+        name: 'test-extension',
+        version: '1.0.0',
+      });
+
+      const manager = createExtensionManager();
+      await manager.refreshCache();
+      const extensions = manager.getLoadedExtensions();
+
+      expect(extensions).toHaveLength(1);
+      expect(extensions[0].path).toBe(extensionDir);
+      expect(extensions[0].config.name).toBe('test-extension');
+    });
+
+    it('should load context file path when QWEN.md is present', async () => {
+      createExtension({
+        extensionsDir: userExtensionsDir,
+        name: 'ext1',
+        version: '1.0.0',
+        addContextFile: true,
+      });
+      createExtension({
+        extensionsDir: userExtensionsDir,
+        name: 'ext2',
+        version: '2.0.0',
+      });
+
+      const manager = createExtensionManager();
+      await manager.refreshCache();
+      const extensions = manager.getLoadedExtensions();
+
+      expect(extensions).toHaveLength(2);
+      const ext1 = extensions.find((e) => e.config.name === 'ext1');
+      const ext2 = extensions.find((e) => e.config.name === 'ext2');
+      expect(ext1?.contextFiles).toEqual([
+        path.join(userExtensionsDir, 'ext1', 'QWEN.md'),
+      ]);
+      expect(ext2?.contextFiles).toEqual([]);
+    });
+
+    it('should load context file path from the extension config', async () => {
+      createExtension({
+        extensionsDir: userExtensionsDir,
+        name: 'ext1',
+        version: '1.0.0',
+        addContextFile: false,
+        contextFileName: 'my-context-file.md',
+      });
+
+      const manager = createExtensionManager();
+      await manager.refreshCache();
+      const extensions = manager.getLoadedExtensions();
+
+      expect(extensions).toHaveLength(1);
+      const ext1 = extensions.find((e) => e.config.name === 'ext1');
+      expect(ext1?.contextFiles).toEqual([
+        path.join(userExtensionsDir, 'ext1', 'my-context-file.md'),
+      ]);
+    });
+
+    it('should skip extensions with invalid JSON and log a warning', async () => {
+      const consoleSpy = vi
+        .spyOn(console, 'error')
+        .mockImplementation(() => {});
+
+      // Good extension
+      createExtension({
+        extensionsDir: userExtensionsDir,
+        name: 'good-ext',
+        version: '1.0.0',
+      });
+
+      // Bad extension
+      const badExtDir = path.join(userExtensionsDir, 'bad-ext');
+      fs.mkdirSync(badExtDir);
+      const badConfigPath = path.join(badExtDir, EXTENSIONS_CONFIG_FILENAME);
+      fs.writeFileSync(badConfigPath, '{ "name": "bad-ext"'); // Malformed
+
+      const manager = createExtensionManager();
+      await manager.refreshCache();
+      const extensions = manager.getLoadedExtensions();
+
+      expect(extensions).toHaveLength(1);
+      expect(extensions[0].config.name).toBe('good-ext');
+      expect(consoleSpy).toHaveBeenCalledWith(
+        expect.stringContaining(`Warning: Skipping extension in ${badExtDir}`),
+      );
+
+      consoleSpy.mockRestore();
+    });
+
+    it('should skip extensions with missing name and log a warning', async () => {
+      const consoleSpy = vi
+        .spyOn(console, 'error')
+        .mockImplementation(() => {});
+
+      // Good extension
+      createExtension({
+        extensionsDir: userExtensionsDir,
+        name: 'good-ext',
+        version: '1.0.0',
+      });
+
+      // Bad extension
+      const badExtDir = path.join(userExtensionsDir, 'bad-ext-no-name');
+      fs.mkdirSync(badExtDir);
+      const badConfigPath = path.join(badExtDir, EXTENSIONS_CONFIG_FILENAME);
+      fs.writeFileSync(badConfigPath, JSON.stringify({ version: '1.0.0' }));
+
+      const manager = createExtensionManager();
+      await manager.refreshCache();
+      const extensions = manager.getLoadedExtensions();
+
+      expect(extensions).toHaveLength(1);
+      expect(extensions[0].config.name).toBe('good-ext');
+      expect(consoleSpy).toHaveBeenCalledWith(
+        expect.stringContaining(`Warning: Skipping extension in ${badExtDir}`),
+      );
+
+      consoleSpy.mockRestore();
+    });
+
+    it('should filter trust out of mcp servers', async () => {
+      createExtension({
+        extensionsDir: userExtensionsDir,
+        name: 'test-extension',
+        version: '1.0.0',
+        mcpServers: {
+          'test-server': {
+            command: 'node',
+            args: ['server.js'],
+            trust: true,
+          } as MCPServerConfig,
+        },
+      });
+
+      const manager = createExtensionManager();
+      await manager.refreshCache();
+      const extensions = manager.getLoadedExtensions();
+
+      expect(extensions).toHaveLength(1);
+      // trust should be filtered from extension.mcpServers (not config.mcpServers)
+      expect(extensions[0].mcpServers?.['test-server']?.trust).toBeUndefined();
+      // config.mcpServers should still have trust (original config)
+      expect(extensions[0].config.mcpServers?.['test-server']?.trust).toBe(
+        true,
+      );
+    });
+  });
+
+  describe('enableExtension / disableExtension', () => {
+    it('should disable an extension at the user scope', async () => {
+      createExtension({
+        extensionsDir: userExtensionsDir,
+        name: 'my-extension',
+        version: '1.0.0',
+      });
+
+      const manager = createExtensionManager();
+      await manager.refreshCache();
+
+      manager.disableExtension('my-extension', SettingScope.User);
+      expect(manager.isEnabled('my-extension', tempWorkspaceDir)).toBe(false);
+    });
+
+    it('should disable an extension at the workspace scope', async () => {
+      createExtension({
+        extensionsDir: userExtensionsDir,
+        name: 'my-extension',
+        version: '1.0.0',
+      });
+
+      const manager = createExtensionManager();
+      await manager.refreshCache();
+
+      manager.disableExtension(
+        'my-extension',
+        SettingScope.Workspace,
+        tempWorkspaceDir,
+      );
+
+      expect(manager.isEnabled('my-extension', tempHomeDir)).toBe(true);
+      expect(manager.isEnabled('my-extension', tempWorkspaceDir)).toBe(false);
+    });
+
+    it('should handle disabling the same extension twice', async () => {
+      createExtension({
+        extensionsDir: userExtensionsDir,
+        name: 'my-extension',
+        version: '1.0.0',
+      });
+
+      const manager = createExtensionManager();
+      await manager.refreshCache();
+
+      manager.disableExtension('my-extension', SettingScope.User);
+      manager.disableExtension('my-extension', SettingScope.User);
+      expect(manager.isEnabled('my-extension', tempWorkspaceDir)).toBe(false);
+    });
+
+    it('should throw an error if you request system scope', async () => {
+      createExtension({
+        extensionsDir: userExtensionsDir,
+        name: 'my-extension',
+        version: '1.0.0',
+      });
+
+      const manager = createExtensionManager();
+      await manager.refreshCache();
+
+      expect(() =>
+        manager.disableExtension('my-extension', SettingScope.System),
+      ).toThrow('System and SystemDefaults scopes are not supported.');
+    });
+
+    it('should enable an extension at the user scope', async () => {
+      createExtension({
+        extensionsDir: userExtensionsDir,
+        name: 'ext1',
+        version: '1.0.0',
+      });
+
+      const manager = createExtensionManager();
+      await manager.refreshCache();
+
+      manager.disableExtension('ext1', SettingScope.User);
+      expect(manager.isEnabled('ext1')).toBe(false);
+
+      manager.enableExtension('ext1', SettingScope.User);
+      expect(manager.isEnabled('ext1')).toBe(true);
+    });
+
+    it('should enable an extension at the workspace scope', async () => {
+      createExtension({
+        extensionsDir: userExtensionsDir,
+        name: 'ext1',
+        version: '1.0.0',
+      });
+
+      const manager = createExtensionManager();
+      await manager.refreshCache();
+
+      manager.disableExtension('ext1', SettingScope.Workspace);
+      expect(manager.isEnabled('ext1', tempWorkspaceDir)).toBe(false);
+
+      manager.enableExtension('ext1', SettingScope.Workspace);
+      expect(manager.isEnabled('ext1', tempWorkspaceDir)).toBe(true);
+    });
+  });
+
+  describe('validateExtensionOverrides', () => {
+    it('should mark all extensions as active if no enabled extensions are provided', async () => {
+      createExtension({
+        extensionsDir: userExtensionsDir,
+        name: 'ext1',
+        version: '1.0.0',
+      });
+      createExtension({
+        extensionsDir: userExtensionsDir,
+        name: 'ext2',
+        version: '1.0.0',
+      });
+
+      const manager = createExtensionManager();
+      await manager.refreshCache();
+      const extensions = manager.getLoadedExtensions();
+
+      expect(extensions).toHaveLength(2);
+      expect(extensions.every((e) => e.isActive)).toBe(true);
+    });
+
+    it('should mark only the enabled extensions as active', async () => {
+      createExtension({
+        extensionsDir: userExtensionsDir,
+        name: 'ext1',
+        version: '1.0.0',
+      });
+      createExtension({
+        extensionsDir: userExtensionsDir,
+        name: 'ext2',
+        version: '1.0.0',
+      });
+      createExtension({
+        extensionsDir: userExtensionsDir,
+        name: 'ext3',
+        version: '1.0.0',
+      });
+
+      const manager = createExtensionManager({
+        enabledExtensionOverrides: ['ext1', 'ext3'],
+      });
+      await manager.refreshCache();
+      const extensions = manager.getLoadedExtensions();
+
+      expect(extensions.find((e) => e.name === 'ext1')?.isActive).toBe(true);
+      expect(extensions.find((e) => e.name === 'ext2')?.isActive).toBe(false);
+      expect(extensions.find((e) => e.name === 'ext3')?.isActive).toBe(true);
+    });
+
+    it('should mark all extensions as inactive when "none" is provided', async () => {
+      createExtension({
+        extensionsDir: userExtensionsDir,
+        name: 'ext1',
+        version: '1.0.0',
+      });
+      createExtension({
+        extensionsDir: userExtensionsDir,
+        name: 'ext2',
+        version: '1.0.0',
+      });
+
+      const manager = createExtensionManager({
+        enabledExtensionOverrides: ['none'],
+      });
+      await manager.refreshCache();
+      const extensions = manager.getLoadedExtensions();
+
+      expect(extensions.every((e) => !e.isActive)).toBe(true);
+    });
+
+    it('should handle case-insensitivity', async () => {
+      createExtension({
+        extensionsDir: userExtensionsDir,
+        name: 'ext1',
+        version: '1.0.0',
+      });
+
+      const manager = createExtensionManager({
+        enabledExtensionOverrides: ['EXT1'],
+      });
+      await manager.refreshCache();
+      const extensions = manager.getLoadedExtensions();
+
+      expect(extensions.find((e) => e.name === 'ext1')?.isActive).toBe(true);
+    });
+
+    it('should log an error for unknown extensions', async () => {
+      const consoleSpy = vi
+        .spyOn(console, 'error')
+        .mockImplementation(() => {});
+
+      createExtension({
+        extensionsDir: userExtensionsDir,
+        name: 'ext1',
+        version: '1.0.0',
+      });
+
+      const manager = createExtensionManager({
+        enabledExtensionOverrides: ['ext4'],
+      });
+      await manager.refreshCache();
+      const extensions = manager.getLoadedExtensions();
+      manager.validateExtensionOverrides(extensions);
+
+      expect(consoleSpy).toHaveBeenCalledWith('Extension not found: ext4');
+      consoleSpy.mockRestore();
+    });
+  });
+
+  describe('loadExtensionConfig', () => {
+    it('should resolve environment variables in extension configuration', async () => {
+      process.env['TEST_API_KEY'] = 'test-api-key-123';
+      process.env['TEST_DB_URL'] = 'postgresql://localhost:5432/testdb';
+
+      try {
+        const extDir = path.join(userExtensionsDir, 'test-extension');
+        fs.mkdirSync(extDir);
+
+        const extensionConfig = {
+          name: 'test-extension',
+          version: '1.0.0',
+          mcpServers: {
+            'test-server': {
+              command: 'node',
+              args: ['server.js'],
+              env: {
+                API_KEY: '$TEST_API_KEY',
+                DATABASE_URL: '${TEST_DB_URL}',
+                STATIC_VALUE: 'no-substitution',
+              },
+            },
+          },
+        };
+        fs.writeFileSync(
+          path.join(extDir, EXTENSIONS_CONFIG_FILENAME),
+          JSON.stringify(extensionConfig),
+        );
+
+        const manager = createExtensionManager();
+        await manager.refreshCache();
+        const extensions = manager.getLoadedExtensions();
+
+        expect(extensions).toHaveLength(1);
+        const extension = extensions[0];
+        expect(extension.config.name).toBe('test-extension');
+        expect(extension.config.mcpServers).toBeDefined();
+
+        const serverConfig = extension.config.mcpServers?.['test-server'];
+        expect(serverConfig).toBeDefined();
+        expect(serverConfig?.env).toBeDefined();
+        expect(serverConfig?.env?.['API_KEY']).toBe('test-api-key-123');
+        expect(serverConfig?.env?.['DATABASE_URL']).toBe(
+          'postgresql://localhost:5432/testdb',
+        );
+        expect(serverConfig?.env?.['STATIC_VALUE']).toBe('no-substitution');
+      } finally {
+        delete process.env['TEST_API_KEY'];
+        delete process.env['TEST_DB_URL'];
+      }
+    });
+
+    it('should handle missing environment variables gracefully', async () => {
+      const extDir = path.join(userExtensionsDir, 'test-extension');
+      fs.mkdirSync(extDir);
+
+      const extensionConfig = {
+        name: 'test-extension',
+        version: '1.0.0',
+        mcpServers: {
+          'test-server': {
+            command: 'node',
+            args: ['server.js'],
+            env: {
+              MISSING_VAR: '$UNDEFINED_ENV_VAR',
+              MISSING_VAR_BRACES: '${ALSO_UNDEFINED}',
+            },
+          },
+        },
+      };
+
+      fs.writeFileSync(
+        path.join(extDir, EXTENSIONS_CONFIG_FILENAME),
+        JSON.stringify(extensionConfig),
+      );
+
+      const manager = createExtensionManager();
+      await manager.refreshCache();
+      const extensions = manager.getLoadedExtensions();
+
+      expect(extensions).toHaveLength(1);
+      const extension = extensions[0];
+      const serverConfig = extension.config.mcpServers!['test-server'];
+      expect(serverConfig.env).toBeDefined();
+      expect(serverConfig.env!['MISSING_VAR']).toBe('$UNDEFINED_ENV_VAR');
+      expect(serverConfig.env!['MISSING_VAR_BRACES']).toBe('${ALSO_UNDEFINED}');
+    });
+  });
+});
+
+describe('extensionManager utility functions', () => {
+  describe('validateName', () => {
+    it('should accept valid extension names', () => {
+      expect(() => validateName('my-extension')).not.toThrow();
+      expect(() => validateName('Extension123')).not.toThrow();
+      expect(() => validateName('test-ext-1')).not.toThrow();
+      expect(() => validateName('UPPERCASE')).not.toThrow();
+    });
+
+    it('should reject names with invalid characters', () => {
+      expect(() => validateName('my_extension')).toThrow(
+        'Invalid extension name',
+      );
+      expect(() => validateName('my.extension')).toThrow(
+        'Invalid extension name',
+      );
+      expect(() => validateName('my extension')).toThrow(
+        'Invalid extension name',
+      );
+      expect(() => validateName('my@ext')).toThrow('Invalid extension name');
+    });
+
+    it('should reject empty names', () => {
+      expect(() => validateName('')).toThrow('Invalid extension name');
+    });
+  });
+
+  describe('hashValue', () => {
+    it('should generate consistent hash for same input', () => {
+      const hash1 = hashValue('test-input');
+      const hash2 = hashValue('test-input');
+      expect(hash1).toBe(hash2);
+    });
+
+    it('should generate different hashes for different inputs', () => {
+      const hash1 = hashValue('input-1');
+      const hash2 = hashValue('input-2');
+      expect(hash1).not.toBe(hash2);
+    });
+
+    it('should generate a valid SHA256 hash', () => {
+      const hash = hashValue('test');
+      expect(hash).toMatch(/^[a-f0-9]{64}$/);
+    });
+  });
+
+  describe('getExtensionId', () => {
+    it('should use hashed name when no install metadata', () => {
+      const config: ExtensionConfig = { name: 'test-ext', version: '1.0.0' };
+      const id = getExtensionId(config);
+      expect(id).toBe(hashValue('test-ext'));
+    });
+
+    it('should use hashed source for local install', () => {
+      const config: ExtensionConfig = { name: 'test-ext', version: '1.0.0' };
+      const metadata = { type: 'local' as const, source: '/path/to/ext' };
+      const id = getExtensionId(config, metadata);
+      expect(id).toBe(hashValue('/path/to/ext'));
+    });
+
+    it('should use GitHub URL for git install', () => {
+      const config: ExtensionConfig = { name: 'test-ext', version: '1.0.0' };
+      const metadata = {
+        type: 'git' as const,
+        source: 'https://github.com/owner/repo',
+      };
+      const id = getExtensionId(config, metadata);
+      expect(id).toBe(hashValue('https://github.com/owner/repo'));
+    });
+  });
+
+  describe('extensionConsentString', () => {
+    it('should generate basic consent string', () => {
+      const config: ExtensionConfig = { name: 'test-ext', version: '1.0.0' };
+      const consent = extensionConsentString(config);
+      expect(consent).toContain('Installing extension "test-ext"');
+      expect(consent).toContain('Extensions may introduce unexpected behavior');
+    });
+
+    it('should include MCP servers in consent string', () => {
+      const config: ExtensionConfig = {
+        name: 'test-ext',
+        version: '1.0.0',
+        mcpServers: {
+          'my-server': { command: 'node', args: ['server.js'] },
+        },
+      };
+      const consent = extensionConsentString(config);
+      expect(consent).toContain(
+        'This extension will run the following MCP servers',
+      );
+      expect(consent).toContain('my-server');
+    });
+
+    it('should include commands in consent string', () => {
+      const config: ExtensionConfig = { name: 'test-ext', version: '1.0.0' };
+      const consent = extensionConsentString(config, ['cmd1', 'cmd2']);
+      expect(consent).toContain(
+        'This extension will add the following commands',
+      );
+      expect(consent).toContain('cmd1, cmd2');
+    });
+
+    it('should include context file info', () => {
+      const config: ExtensionConfig = {
+        name: 'test-ext',
+        version: '1.0.0',
+        contextFileName: 'CONTEXT.md',
+      };
+      const consent = extensionConsentString(config);
+      expect(consent).toContain('CONTEXT.md');
+    });
+
+    it('should include excluded tools', () => {
+      const config: ExtensionConfig = {
+        name: 'test-ext',
+        version: '1.0.0',
+        excludeTools: ['tool1', 'tool2'],
+      };
+      const consent = extensionConsentString(config);
+      expect(consent).toContain('exclude the following core tools');
+    });
+  });
+
+  describe('maybeRequestConsentOrFail', () => {
+    it('should request consent for new installation', async () => {
+      const config: ExtensionConfig = { name: 'test-ext', version: '1.0.0' };
+      const requestConsent = vi.fn().mockResolvedValue(true);
+
+      await maybeRequestConsentOrFail(config, requestConsent, []);
+
+      expect(requestConsent).toHaveBeenCalledTimes(1);
+    });
+
+    it('should throw if user declines consent', async () => {
+      const config: ExtensionConfig = { name: 'test-ext', version: '1.0.0' };
+      const requestConsent = vi.fn().mockResolvedValue(false);
+
+      await expect(
+        maybeRequestConsentOrFail(config, requestConsent, []),
+      ).rejects.toThrow('Installation cancelled');
+    });
+
+    it('should skip consent if config unchanged during update', async () => {
+      const config: ExtensionConfig = { name: 'test-ext', version: '1.0.0' };
+      const previousConfig: ExtensionConfig = {
+        name: 'test-ext',
+        version: '0.9.0',
+      };
+      const requestConsent = vi.fn().mockResolvedValue(true);
+
+      await maybeRequestConsentOrFail(
+        config,
+        requestConsent,
+        [],
+        previousConfig,
+      );
+
+      expect(requestConsent).not.toHaveBeenCalled();
+    });
+
+    it('should request consent if config changed during update', async () => {
+      const config: ExtensionConfig = {
+        name: 'test-ext',
+        version: '1.0.0',
+        mcpServers: { server: { command: 'node' } },
+      };
+      const previousConfig: ExtensionConfig = {
+        name: 'test-ext',
+        version: '0.9.0',
+      };
+      const requestConsent = vi.fn().mockResolvedValue(true);
+
+      await maybeRequestConsentOrFail(
+        config,
+        requestConsent,
+        [],
+        previousConfig,
+      );
+
+      expect(requestConsent).toHaveBeenCalledTimes(1);
+    });
+  });
+
+  describe('parseInstallSource', () => {
+    it('should parse HTTPS URL as git type', async () => {
+      const result = await parseInstallSource('https://github.com/owner/repo');
+      expect(result.type).toBe('git');
+      expect(result.source).toBe('https://github.com/owner/repo');
+    });
+
+    it('should parse HTTP URL as git type', async () => {
+      const result = await parseInstallSource('http://example.com/repo');
+      expect(result.type).toBe('git');
+    });
+
+    it('should parse git@ URL as git type', async () => {
+      const result = await parseInstallSource('git@github.com:owner/repo.git');
+      expect(result.type).toBe('git');
+    });
+
+    it('should parse sso:// URL as git type', async () => {
+      const result = await parseInstallSource('sso://some/path');
+      expect(result.type).toBe('git');
+    });
+
+    it('should parse marketplace URL correctly', async () => {
+      const result = await parseInstallSource(
+        'https://example.com/marketplace:plugin-name',
+      );
+      expect(result.type).toBe('marketplace');
+      expect(result.marketplace?.pluginName).toBe('plugin-name');
+    });
+
+    it('should throw for non-existent local path', async () => {
+      await expect(
+        parseInstallSource('/nonexistent/path/to/extension'),
+      ).rejects.toThrow('Install source not found');
+    });
+  });
+});

packages/core/src/extension/extensionSettings.test.ts

@@ -0,0 +1,730 @@
+import { afterEach, beforeEach, describe, expect, it, vi } from 'vitest';
+import * as path from 'node:path';
+import * as os from 'node:os';
+import {
+  getEnvContents,
+  maybePromptForSettings,
+  promptForSetting,
+  type ExtensionSetting,
+  updateSetting,
+  ExtensionSettingScope,
+  getScopedEnvContents,
+} from './extensionSettings.js';
+import type { ExtensionConfig } from './extensionManager.js';
+import { ExtensionStorage } from './storage.js';
+import prompts from 'prompts';
+import * as fsPromises from 'node:fs/promises';
+import * as fs from 'node:fs';
+import { KeychainTokenStorage } from '../mcp/token-storage/keychain-token-storage.js';
+import { EXTENSION_SETTINGS_FILENAME } from './variables.js';
+
+vi.mock('prompts');
+vi.mock('os', async (importOriginal) => {
+  const mockedOs = await importOriginal<typeof os>();
+  return {
+    ...mockedOs,
+    homedir: vi.fn(),
+  };
+});
+
+vi.mock(
+  '../mcp/token-storage/keychain-token-storage.js',
+  async (importOriginal) => {
+    const actual =
+      await importOriginal<
+        typeof import('../mcp/token-storage/keychain-token-storage.js')
+      >();
+    return {
+      ...actual,
+      KeychainTokenStorage: vi.fn(),
+    };
+  },
+);
+
+describe('extensionSettings', () => {
+  let tempHomeDir: string;
+  let tempWorkspaceDir: string;
+  let extensionDir: string;
+  let mockKeychainData: Record<string, Record<string, string>>;
+
+  beforeEach(() => {
+    vi.clearAllMocks();
+    mockKeychainData = {};
+    vi.mocked(KeychainTokenStorage).mockImplementation(
+      (serviceName: string) => {
+        if (!mockKeychainData[serviceName]) {
+          mockKeychainData[serviceName] = {};
+        }
+        const keychainData = mockKeychainData[serviceName];
+        return {
+          getSecret: vi
+            .fn()
+            .mockImplementation(
+              async (key: string) => keychainData[key] || null,
+            ),
+          setSecret: vi
+            .fn()
+            .mockImplementation(async (key: string, value: string) => {
+              keychainData[key] = value;
+            }),
+          deleteSecret: vi.fn().mockImplementation(async (key: string) => {
+            delete keychainData[key];
+          }),
+          listSecrets: vi
+            .fn()
+            .mockImplementation(async () => Object.keys(keychainData)),
+          isAvailable: vi.fn().mockResolvedValue(true),
+        } as unknown as KeychainTokenStorage;
+      },
+    );
+    tempHomeDir = os.tmpdir() + path.sep + `gemini-cli-test-home-${Date.now()}`;
+    tempWorkspaceDir = path.join(
+      os.tmpdir(),
+      `gemini-cli-test-workspace-${Date.now()}`,
+    );
+    extensionDir = path.join(tempHomeDir, '.gemini', 'extensions', 'test-ext');
+    // Spy and mock the method, but also create the directory so we can write to it.
+    vi.spyOn(ExtensionStorage.prototype, 'getExtensionDir').mockReturnValue(
+      extensionDir,
+    );
+    fs.mkdirSync(extensionDir, { recursive: true });
+    fs.mkdirSync(tempWorkspaceDir, { recursive: true });
+    vi.mocked(os.homedir).mockReturnValue(tempHomeDir);
+    vi.spyOn(process, 'cwd').mockReturnValue(tempWorkspaceDir);
+    vi.mocked(prompts).mockClear();
+  });
+
+  afterEach(() => {
+    fs.rmSync(tempHomeDir, { recursive: true, force: true });
+    fs.rmSync(tempWorkspaceDir, { recursive: true, force: true });
+    vi.restoreAllMocks();
+  });
+
+  describe('maybePromptForSettings', () => {
+    const mockRequestSetting = vi.fn(
+      async (setting: ExtensionSetting) => `mock-${setting.envVar}`,
+    );
+
+    beforeEach(() => {
+      mockRequestSetting.mockClear();
+    });
+
+    it('should do nothing if settings are undefined', async () => {
+      const config: ExtensionConfig = { name: 'test-ext', version: '1.0.0' };
+      await maybePromptForSettings(
+        config,
+        '12345',
+        mockRequestSetting,
+        undefined,
+        undefined,
+      );
+      expect(mockRequestSetting).not.toHaveBeenCalled();
+    });
+
+    it('should do nothing if settings are empty', async () => {
+      const config: ExtensionConfig = {
+        name: 'test-ext',
+        version: '1.0.0',
+        settings: [],
+      };
+      await maybePromptForSettings(
+        config,
+        '12345',
+        mockRequestSetting,
+        undefined,
+        undefined,
+      );
+      expect(mockRequestSetting).not.toHaveBeenCalled();
+    });
+
+    it('should prompt for all settings if there is no previous config', async () => {
+      const config: ExtensionConfig = {
+        name: 'test-ext',
+        version: '1.0.0',
+        settings: [
+          { name: 's1', description: 'd1', envVar: 'VAR1' },
+          { name: 's2', description: 'd2', envVar: 'VAR2' },
+        ],
+      };
+      await maybePromptForSettings(
+        config,
+        '12345',
+        mockRequestSetting,
+        undefined,
+        undefined,
+      );
+      expect(mockRequestSetting).toHaveBeenCalledTimes(2);
+      expect(mockRequestSetting).toHaveBeenCalledWith(config.settings![0]);
+      expect(mockRequestSetting).toHaveBeenCalledWith(config.settings![1]);
+    });
+
+    it('should only prompt for new settings', async () => {
+      const previousConfig: ExtensionConfig = {
+        name: 'test-ext',
+        version: '1.0.0',
+        settings: [{ name: 's1', description: 'd1', envVar: 'VAR1' }],
+      };
+      const newConfig: ExtensionConfig = {
+        name: 'test-ext',
+        version: '1.0.0',
+        settings: [
+          { name: 's1', description: 'd1', envVar: 'VAR1' },
+          { name: 's2', description: 'd2', envVar: 'VAR2' },
+        ],
+      };
+      const previousSettings = { VAR1: 'previous-VAR1' };
+
+      await maybePromptForSettings(
+        newConfig,
+        '12345',
+        mockRequestSetting,
+        previousConfig,
+        previousSettings,
+      );
+
+      expect(mockRequestSetting).toHaveBeenCalledTimes(1);
+      expect(mockRequestSetting).toHaveBeenCalledWith(newConfig.settings![1]);
+
+      const expectedEnvPath = path.join(extensionDir, '.env');
+      const actualContent = await fsPromises.readFile(expectedEnvPath, 'utf-8');
+      const expectedContent = 'VAR1=previous-VAR1\nVAR2=mock-VAR2\n';
+      expect(actualContent).toBe(expectedContent);
+    });
+
+    it('should clear settings if new config has no settings', async () => {
+      const previousConfig: ExtensionConfig = {
+        name: 'test-ext',
+        version: '1.0.0',
+        settings: [
+          { name: 's1', description: 'd1', envVar: 'VAR1' },
+          {
+            name: 's2',
+            description: 'd2',
+            envVar: 'SENSITIVE_VAR',
+            sensitive: true,
+          },
+        ],
+      };
+      const newConfig: ExtensionConfig = {
+        name: 'test-ext',
+        version: '1.0.0',
+        settings: [],
+      };
+      const previousSettings = {
+        VAR1: 'previous-VAR1',
+        SENSITIVE_VAR: 'secret',
+      };
+      const userKeychain = new KeychainTokenStorage(
+        `Gemini CLI Extensions test-ext 12345`,
+      );
+      await userKeychain.setSecret('SENSITIVE_VAR', 'secret');
+      const envPath = path.join(extensionDir, '.env');
+      await fsPromises.writeFile(envPath, 'VAR1=previous-VAR1');
+
+      await maybePromptForSettings(
+        newConfig,
+        '12345',
+        mockRequestSetting,
+        previousConfig,
+        previousSettings,
+      );
+
+      expect(mockRequestSetting).not.toHaveBeenCalled();
+      const actualContent = await fsPromises.readFile(envPath, 'utf-8');
+      expect(actualContent).toBe('');
+      expect(await userKeychain.getSecret('SENSITIVE_VAR')).toBeNull();
+    });
+
+    it('should remove sensitive settings from keychain', async () => {
+      const previousConfig: ExtensionConfig = {
+        name: 'test-ext',
+        version: '1.0.0',
+        settings: [
+          {
+            name: 's1',
+            description: 'd1',
+            envVar: 'SENSITIVE_VAR',
+            sensitive: true,
+          },
+        ],
+      };
+      const newConfig: ExtensionConfig = {
+        name: 'test-ext',
+        version: '1.0.0',
+        settings: [],
+      };
+      const previousSettings = { SENSITIVE_VAR: 'secret' };
+      const userKeychain = new KeychainTokenStorage(
+        `Gemini CLI Extensions test-ext 12345`,
+      );
+      await userKeychain.setSecret('SENSITIVE_VAR', 'secret');
+
+      await maybePromptForSettings(
+        newConfig,
+        '12345',
+        mockRequestSetting,
+        previousConfig,
+        previousSettings,
+      );
+
+      expect(await userKeychain.getSecret('SENSITIVE_VAR')).toBeNull();
+    });
+
+    it('should remove settings that are no longer in the config', async () => {
+      const previousConfig: ExtensionConfig = {
+        name: 'test-ext',
+        version: '1.0.0',
+        settings: [
+          { name: 's1', description: 'd1', envVar: 'VAR1' },
+          { name: 's2', description: 'd2', envVar: 'VAR2' },
+        ],
+      };
+      const newConfig: ExtensionConfig = {
+        name: 'test-ext',
+        version: '1.0.0',
+        settings: [{ name: 's1', description: 'd1', envVar: 'VAR1' }],
+      };
+      const previousSettings = {
+        VAR1: 'previous-VAR1',
+        VAR2: 'previous-VAR2',
+      };
+
+      await maybePromptForSettings(
+        newConfig,
+        '12345',
+        mockRequestSetting,
+        previousConfig,
+        previousSettings,
+      );
+
+      expect(mockRequestSetting).not.toHaveBeenCalled();
+
+      const expectedEnvPath = path.join(extensionDir, '.env');
+      const actualContent = await fsPromises.readFile(expectedEnvPath, 'utf-8');
+      const expectedContent = 'VAR1=previous-VAR1\n';
+      expect(actualContent).toBe(expectedContent);
+    });
+
+    it('should reprompt if a setting changes sensitivity', async () => {
+      const previousConfig: ExtensionConfig = {
+        name: 'test-ext',
+        version: '1.0.0',
+        settings: [
+          { name: 's1', description: 'd1', envVar: 'VAR1', sensitive: false },
+        ],
+      };
+      const newConfig: ExtensionConfig = {
+        name: 'test-ext',
+        version: '1.0.0',
+        settings: [
+          { name: 's1', description: 'd1', envVar: 'VAR1', sensitive: true },
+        ],
+      };
+      const previousSettings = { VAR1: 'previous-VAR1' };
+
+      await maybePromptForSettings(
+        newConfig,
+        '12345',
+        mockRequestSetting,
+        previousConfig,
+        previousSettings,
+      );
+
+      expect(mockRequestSetting).toHaveBeenCalledTimes(1);
+      expect(mockRequestSetting).toHaveBeenCalledWith(newConfig.settings![0]);
+
+      // The value should now be in keychain, not the .env file.
+      const expectedEnvPath = path.join(extensionDir, '.env');
+      const actualContent = await fsPromises.readFile(expectedEnvPath, 'utf-8');
+      expect(actualContent).toBe('');
+    });
+
+    it('should not prompt if settings are identical', async () => {
+      const previousConfig: ExtensionConfig = {
+        name: 'test-ext',
+        version: '1.0.0',
+        settings: [
+          { name: 's1', description: 'd1', envVar: 'VAR1' },
+          { name: 's2', description: 'd2', envVar: 'VAR2' },
+        ],
+      };
+      const newConfig: ExtensionConfig = {
+        name: 'test-ext',
+        version: '1.0.0',
+        settings: [
+          { name: 's1', description: 'd1', envVar: 'VAR1' },
+          { name: 's2', description: 'd2', envVar: 'VAR2' },
+        ],
+      };
+      const previousSettings = {
+        VAR1: 'previous-VAR1',
+        VAR2: 'previous-VAR2',
+      };
+
+      await maybePromptForSettings(
+        newConfig,
+        '12345',
+        mockRequestSetting,
+        previousConfig,
+        previousSettings,
+      );
+
+      expect(mockRequestSetting).not.toHaveBeenCalled();
+      const expectedEnvPath = path.join(extensionDir, '.env');
+      const actualContent = await fsPromises.readFile(expectedEnvPath, 'utf-8');
+      const expectedContent = 'VAR1=previous-VAR1\nVAR2=previous-VAR2\n';
+      expect(actualContent).toBe(expectedContent);
+    });
+
+    it('should wrap values with spaces in quotes', async () => {
+      const config: ExtensionConfig = {
+        name: 'test-ext',
+        version: '1.0.0',
+        settings: [{ name: 's1', description: 'd1', envVar: 'VAR1' }],
+      };
+      mockRequestSetting.mockResolvedValue('a value with spaces');
+
+      await maybePromptForSettings(
+        config,
+        '12345',
+        mockRequestSetting,
+        undefined,
+        undefined,
+      );
+
+      const expectedEnvPath = path.join(extensionDir, '.env');
+      const actualContent = await fsPromises.readFile(expectedEnvPath, 'utf-8');
+      expect(actualContent).toBe('VAR1="a value with spaces"\n');
+    });
+
+    it('should not attempt to clear secrets if keychain is unavailable', async () => {
+      // Arrange
+      const mockIsAvailable = vi.fn().mockResolvedValue(false);
+      const mockListSecrets = vi.fn();
+
+      vi.mocked(KeychainTokenStorage).mockImplementation(
+        () =>
+          ({
+            isAvailable: mockIsAvailable,
+            listSecrets: mockListSecrets,
+            deleteSecret: vi.fn(),
+            getSecret: vi.fn(),
+            setSecret: vi.fn(),
+          }) as unknown as KeychainTokenStorage,
+      );
+
+      const config: ExtensionConfig = {
+        name: 'test-ext',
+        version: '1.0.0',
+        settings: [], // Empty settings triggers clearSettings
+      };
+
+      const previousConfig: ExtensionConfig = {
+        name: 'test-ext',
+        version: '1.0.0',
+        settings: [{ name: 's1', description: 'd1', envVar: 'VAR1' }],
+      };
+
+      // Act
+      await maybePromptForSettings(
+        config,
+        '12345',
+        mockRequestSetting,
+        previousConfig,
+        undefined,
+      );
+
+      // Assert
+      expect(mockIsAvailable).toHaveBeenCalled();
+      expect(mockListSecrets).not.toHaveBeenCalled();
+    });
+  });
+
+  describe('promptForSetting', () => {
+    it.each([
+      {
+        description:
+          'should use prompts with type "password" for sensitive settings',
+        setting: {
+          name: 'API Key',
+          description: 'Your secret key',
+          envVar: 'API_KEY',
+          sensitive: true,
+        },
+        expectedType: 'password',
+        promptValue: 'secret-key',
+      },
+      {
+        description:
+          'should use prompts with type "text" for non-sensitive settings',
+        setting: {
+          name: 'Username',
+          description: 'Your public username',
+          envVar: 'USERNAME',
+          sensitive: false,
+        },
+        expectedType: 'text',
+        promptValue: 'test-user',
+      },
+      {
+        description: 'should default to "text" if sensitive is undefined',
+        setting: {
+          name: 'Username',
+          description: 'Your public username',
+          envVar: 'USERNAME',
+        },
+        expectedType: 'text',
+        promptValue: 'test-user',
+      },
+    ])('$description', async ({ setting, expectedType, promptValue }) => {
+      vi.mocked(prompts).mockResolvedValue({ value: promptValue });
+
+      const result = await promptForSetting(setting as ExtensionSetting);
+
+      expect(prompts).toHaveBeenCalledWith({
+        type: expectedType,
+        name: 'value',
+        message: `${setting.name}\n${setting.description}`,
+      });
+      expect(result).toBe(promptValue);
+    });
+
+    it('should return undefined if the user cancels the prompt', async () => {
+      vi.mocked(prompts).mockResolvedValue({ value: undefined });
+      const result = await promptForSetting({
+        name: 'Test',
+        description: 'Test desc',
+        envVar: 'TEST_VAR',
+      });
+      expect(result).toBeUndefined();
+    });
+  });
+
+  describe('getScopedEnvContents', () => {
+    const config: ExtensionConfig = {
+      name: 'test-ext',
+      version: '1.0.0',
+      settings: [
+        { name: 's1', description: 'd1', envVar: 'VAR1' },
+        {
+          name: 's2',
+          description: 'd2',
+          envVar: 'SENSITIVE_VAR',
+          sensitive: true,
+        },
+      ],
+    };
+    const extensionId = '12345';
+
+    it('should return combined contents from user .env and keychain for USER scope', async () => {
+      const userEnvPath = path.join(extensionDir, EXTENSION_SETTINGS_FILENAME);
+      await fsPromises.writeFile(userEnvPath, 'VAR1=user-value1');
+      const userKeychain = new KeychainTokenStorage(
+        `Gemini CLI Extensions test-ext 12345`,
+      );
+      await userKeychain.setSecret('SENSITIVE_VAR', 'user-secret');
+
+      const contents = await getScopedEnvContents(
+        config,
+        extensionId,
+        ExtensionSettingScope.USER,
+      );
+
+      expect(contents).toEqual({
+        VAR1: 'user-value1',
+        SENSITIVE_VAR: 'user-secret',
+      });
+    });
+
+    it('should return combined contents from workspace .env and keychain for WORKSPACE scope', async () => {
+      const workspaceEnvPath = path.join(
+        tempWorkspaceDir,
+        EXTENSION_SETTINGS_FILENAME,
+      );
+      await fsPromises.writeFile(workspaceEnvPath, 'VAR1=workspace-value1');
+      const workspaceKeychain = new KeychainTokenStorage(
+        `Gemini CLI Extensions test-ext 12345 ${tempWorkspaceDir}`,
+      );
+      await workspaceKeychain.setSecret('SENSITIVE_VAR', 'workspace-secret');
+
+      const contents = await getScopedEnvContents(
+        config,
+        extensionId,
+        ExtensionSettingScope.WORKSPACE,
+      );
+
+      expect(contents).toEqual({
+        VAR1: 'workspace-value1',
+        SENSITIVE_VAR: 'workspace-secret',
+      });
+    });
+  });
+
+  describe('getEnvContents (merged)', () => {
+    const config: ExtensionConfig = {
+      name: 'test-ext',
+      version: '1.0.0',
+      settings: [
+        { name: 's1', description: 'd1', envVar: 'VAR1' },
+        { name: 's2', description: 'd2', envVar: 'VAR2', sensitive: true },
+        { name: 's3', description: 'd3', envVar: 'VAR3' },
+      ],
+    };
+    const extensionId = '12345';
+
+    it('should merge user and workspace settings, with workspace taking precedence', async () => {
+      // User settings
+      const userEnvPath = path.join(extensionDir, EXTENSION_SETTINGS_FILENAME);
+      await fsPromises.writeFile(
+        userEnvPath,
+        'VAR1=user-value1\nVAR3=user-value3',
+      );
+      const userKeychain = new KeychainTokenStorage(
+        `Gemini CLI Extensions test-ext ${extensionId}`,
+      );
+      await userKeychain.setSecret('VAR2', 'user-secret2');
+
+      // Workspace settings
+      const workspaceEnvPath = path.join(
+        tempWorkspaceDir,
+        EXTENSION_SETTINGS_FILENAME,
+      );
+      await fsPromises.writeFile(workspaceEnvPath, 'VAR1=workspace-value1');
+      const workspaceKeychain = new KeychainTokenStorage(
+        `Gemini CLI Extensions test-ext ${extensionId} ${tempWorkspaceDir}`,
+      );
+      await workspaceKeychain.setSecret('VAR2', 'workspace-secret2');
+
+      const contents = await getEnvContents(config, extensionId);
+
+      expect(contents).toEqual({
+        VAR1: 'workspace-value1',
+        VAR2: 'workspace-secret2',
+        VAR3: 'user-value3',
+      });
+    });
+  });
+
+  describe('updateSetting', () => {
+    const config: ExtensionConfig = {
+      name: 'test-ext',
+      version: '1.0.0',
+      settings: [
+        { name: 's1', description: 'd1', envVar: 'VAR1' },
+        { name: 's2', description: 'd2', envVar: 'VAR2', sensitive: true },
+      ],
+    };
+    const mockRequestSetting = vi.fn();
+
+    beforeEach(async () => {
+      const userEnvPath = path.join(extensionDir, '.env');
+      await fsPromises.writeFile(userEnvPath, 'VAR1=value1\n');
+      const userKeychain = new KeychainTokenStorage(
+        `Gemini CLI Extensions test-ext 12345`,
+      );
+      await userKeychain.setSecret('VAR2', 'value2');
+      mockRequestSetting.mockClear();
+    });
+
+    it('should update a non-sensitive setting in USER scope', async () => {
+      mockRequestSetting.mockResolvedValue('new-value1');
+
+      await updateSetting(
+        config,
+        '12345',
+        'VAR1',
+        mockRequestSetting,
+        ExtensionSettingScope.USER,
+      );
+
+      const expectedEnvPath = path.join(extensionDir, '.env');
+      const actualContent = await fsPromises.readFile(expectedEnvPath, 'utf-8');
+      expect(actualContent).toContain('VAR1=new-value1');
+    });
+
+    it('should update a non-sensitive setting in WORKSPACE scope', async () => {
+      mockRequestSetting.mockResolvedValue('new-workspace-value');
+
+      await updateSetting(
+        config,
+        '12345',
+        'VAR1',
+        mockRequestSetting,
+        ExtensionSettingScope.WORKSPACE,
+      );
+
+      const expectedEnvPath = path.join(tempWorkspaceDir, '.env');
+      const actualContent = await fsPromises.readFile(expectedEnvPath, 'utf-8');
+      expect(actualContent).toContain('VAR1=new-workspace-value');
+    });
+
+    it('should update a sensitive setting in USER scope', async () => {
+      mockRequestSetting.mockResolvedValue('new-value2');
+
+      await updateSetting(
+        config,
+        '12345',
+        'VAR2',
+        mockRequestSetting,
+        ExtensionSettingScope.USER,
+      );
+
+      const userKeychain = new KeychainTokenStorage(
+        `Gemini CLI Extensions test-ext 12345`,
+      );
+      expect(await userKeychain.getSecret('VAR2')).toBe('new-value2');
+    });
+
+    it('should update a sensitive setting in WORKSPACE scope', async () => {
+      mockRequestSetting.mockResolvedValue('new-workspace-secret');
+
+      await updateSetting(
+        config,
+        '12345',
+        'VAR2',
+        mockRequestSetting,
+        ExtensionSettingScope.WORKSPACE,
+      );
+
+      const workspaceKeychain = new KeychainTokenStorage(
+        `Gemini CLI Extensions test-ext 12345 ${tempWorkspaceDir}`,
+      );
+      expect(await workspaceKeychain.getSecret('VAR2')).toBe(
+        'new-workspace-secret',
+      );
+    });
+
+    it('should leave existing, unmanaged .env variables intact when updating in WORKSPACE scope', async () => {
+      // Setup a pre-existing .env file in the workspace with unmanaged variables
+      const workspaceEnvPath = path.join(tempWorkspaceDir, '.env');
+      const originalEnvContent =
+        'PROJECT_VAR_1=value_1\nPROJECT_VAR_2=value_2\nVAR1=original-value'; // VAR1 is managed by extension
+      await fsPromises.writeFile(workspaceEnvPath, originalEnvContent);
+
+      // Simulate updating an extension-managed non-sensitive setting
+      mockRequestSetting.mockResolvedValue('updated-value');
+      await updateSetting(
+        config,
+        '12345',
+        'VAR1',
+        mockRequestSetting,
+        ExtensionSettingScope.WORKSPACE,
+      );
+
+      // Read the .env file after update
+      const actualContent = await fsPromises.readFile(
+        workspaceEnvPath,
+        'utf-8',
+      );
+
+      // Assert that original variables are intact and extension variable is updated
+      expect(actualContent).toContain('PROJECT_VAR_1=value_1');
+      expect(actualContent).toContain('PROJECT_VAR_2=value_2');
+      expect(actualContent).toContain('VAR1=updated-value');
+
+      // Ensure no other unexpected changes or deletions
+      const lines = actualContent.split('\n').filter((line) => line.length > 0);
+      expect(lines).toHaveLength(3); // Should only have the three variables
+    });
+  });
+});

packages/core/src/extension/extensionSettings.ts

@@ -0,0 +1,298 @@
+/**
+ * @license
+ * Copyright 2025 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+import * as fs from 'node:fs/promises';
+import * as fsSync from 'node:fs';
+import * as dotenv from 'dotenv';
+import * as path from 'node:path';
+import { ExtensionStorage } from './storage.js';
+import type { ExtensionConfig } from './extensionManager.js';
+import prompts from 'prompts';
+import { EXTENSION_SETTINGS_FILENAME } from './variables.js';
+import { KeychainTokenStorage } from '../mcp/token-storage/keychain-token-storage.js';
+
+export enum ExtensionSettingScope {
+  USER = 'user',
+  WORKSPACE = 'workspace',
+}
+
+export interface ExtensionSetting {
+  name: string;
+  description: string;
+  envVar: string;
+  // NOTE: If no value is set, this setting will be considered NOT sensitive.
+  sensitive?: boolean;
+}
+
+const getKeychainStorageName = (
+  extensionName: string,
+  extensionId: string,
+  scope: ExtensionSettingScope,
+): string => {
+  const base = `Qwen Code Extensions ${extensionName} ${extensionId}`;
+  if (scope === ExtensionSettingScope.WORKSPACE) {
+    return `${base} ${process.cwd()}`;
+  }
+  return base;
+};
+
+const getEnvFilePath = (
+  extensionName: string,
+  scope: ExtensionSettingScope,
+): string => {
+  if (scope === ExtensionSettingScope.WORKSPACE) {
+    return path.join(process.cwd(), EXTENSION_SETTINGS_FILENAME);
+  }
+  return new ExtensionStorage(extensionName).getEnvFilePath();
+};
+
+export async function maybePromptForSettings(
+  extensionConfig: ExtensionConfig,
+  extensionId: string,
+  requestSetting: (setting: ExtensionSetting) => Promise<string>,
+  previousExtensionConfig?: ExtensionConfig,
+  previousSettings?: Record<string, string>,
+): Promise<void> {
+  const { name: extensionName, settings } = extensionConfig;
+  if (
+    (!settings || settings.length === 0) &&
+    (!previousExtensionConfig?.settings ||
+      previousExtensionConfig.settings.length === 0)
+  ) {
+    return;
+  }
+  // We assume user scope here because we don't have a way to ask the user for scope during the initial setup.
+  // The user can change the scope later using the `settings set` command.
+  const scope = ExtensionSettingScope.USER;
+  const envFilePath = getEnvFilePath(extensionName, scope);
+  const keychain = new KeychainTokenStorage(
+    getKeychainStorageName(extensionName, extensionId, scope),
+  );
+
+  if (!settings || settings.length === 0) {
+    await clearSettings(envFilePath, keychain);
+    return;
+  }
+
+  const settingsChanges = getSettingsChanges(
+    settings,
+    previousExtensionConfig?.settings ?? [],
+  );
+
+  const allSettings: Record<string, string> = { ...previousSettings };
+
+  for (const removedEnvSetting of settingsChanges.removeEnv) {
+    delete allSettings[removedEnvSetting.envVar];
+  }
+
+  for (const removedSensitiveSetting of settingsChanges.removeSensitive) {
+    await keychain.deleteSecret(removedSensitiveSetting.envVar);
+  }
+
+  for (const setting of settingsChanges.promptForSensitive.concat(
+    settingsChanges.promptForEnv,
+  )) {
+    const answer = await requestSetting(setting);
+    allSettings[setting.envVar] = answer;
+  }
+
+  const nonSensitiveSettings: Record<string, string> = {};
+  for (const setting of settings) {
+    const value = allSettings[setting.envVar];
+    if (value === undefined) {
+      continue;
+    }
+    if (setting.sensitive) {
+      await keychain.setSecret(setting.envVar, value);
+    } else {
+      nonSensitiveSettings[setting.envVar] = value;
+    }
+  }
+
+  const envContent = formatEnvContent(nonSensitiveSettings);
+
+  await fs.writeFile(envFilePath, envContent);
+}
+
+function formatEnvContent(settings: Record<string, string>): string {
+  let envContent = '';
+  for (const [key, value] of Object.entries(settings)) {
+    const formattedValue = value.includes(' ') ? `"${value}"` : value;
+    envContent += `${key}=${formattedValue}\n`;
+  }
+  return envContent;
+}
+
+export async function promptForSetting(
+  setting: ExtensionSetting,
+): Promise<string> {
+  const response = await prompts({
+    type: setting.sensitive ? 'password' : 'text',
+    name: 'value',
+    message: `${setting.name}\n${setting.description}`,
+  });
+  return response.value;
+}
+
+export async function getScopedEnvContents(
+  extensionConfig: ExtensionConfig,
+  extensionId: string,
+  scope: ExtensionSettingScope,
+): Promise<Record<string, string>> {
+  const { name: extensionName } = extensionConfig;
+  const keychain = new KeychainTokenStorage(
+    getKeychainStorageName(extensionName, extensionId, scope),
+  );
+  const envFilePath = getEnvFilePath(extensionName, scope);
+  let customEnv: Record<string, string> = {};
+  if (fsSync.existsSync(envFilePath)) {
+    const envFile = fsSync.readFileSync(envFilePath, 'utf-8');
+    customEnv = dotenv.parse(envFile);
+  }
+
+  if (extensionConfig.settings) {
+    for (const setting of extensionConfig.settings) {
+      if (setting.sensitive) {
+        const secret = await keychain.getSecret(setting.envVar);
+        if (secret) {
+          customEnv[setting.envVar] = secret;
+        }
+      }
+    }
+  }
+  return customEnv;
+}
+
+export async function getEnvContents(
+  extensionConfig: ExtensionConfig,
+  extensionId: string,
+): Promise<Record<string, string>> {
+  if (!extensionConfig.settings || extensionConfig.settings.length === 0) {
+    return Promise.resolve({});
+  }
+
+  const userSettings = await getScopedEnvContents(
+    extensionConfig,
+    extensionId,
+    ExtensionSettingScope.USER,
+  );
+  const workspaceSettings = await getScopedEnvContents(
+    extensionConfig,
+    extensionId,
+    ExtensionSettingScope.WORKSPACE,
+  );
+
+  return { ...userSettings, ...workspaceSettings };
+}
+
+export async function updateSetting(
+  extensionConfig: ExtensionConfig,
+  extensionId: string,
+  settingKey: string,
+  requestSetting: (setting: ExtensionSetting) => Promise<string>,
+  scope: ExtensionSettingScope,
+): Promise<void> {
+  const { name: extensionName, settings } = extensionConfig;
+  if (!settings || settings.length === 0) {
+    console.log('This extension does not have any settings.');
+    return;
+  }
+
+  const settingToUpdate = settings.find(
+    (s) => s.name === settingKey || s.envVar === settingKey,
+  );
+
+  if (!settingToUpdate) {
+    console.log(`Setting ${settingKey} not found.`);
+    return;
+  }
+
+  const newValue = await requestSetting(settingToUpdate);
+  const keychain = new KeychainTokenStorage(
+    getKeychainStorageName(extensionName, extensionId, scope),
+  );
+
+  if (settingToUpdate.sensitive) {
+    await keychain.setSecret(settingToUpdate.envVar, newValue);
+    return;
+  }
+
+  // For non-sensitive settings, we need to read the existing .env file,
+  // update the value, and write it back, preserving any other values.
+  const envFilePath = getEnvFilePath(extensionName, scope);
+  let envContent = '';
+  if (fsSync.existsSync(envFilePath)) {
+    envContent = await fs.readFile(envFilePath, 'utf-8');
+  }
+
+  const parsedEnv = dotenv.parse(envContent);
+  parsedEnv[settingToUpdate.envVar] = newValue;
+
+  // We only want to write back the variables that are not sensitive.
+  const nonSensitiveSettings: Record<string, string> = {};
+  const sensitiveEnvVars = new Set(
+    settings.filter((s) => s.sensitive).map((s) => s.envVar),
+  );
+  for (const [key, value] of Object.entries(parsedEnv)) {
+    if (!sensitiveEnvVars.has(key)) {
+      nonSensitiveSettings[key] = value;
+    }
+  }
+
+  const newEnvContent = formatEnvContent(nonSensitiveSettings);
+  await fs.writeFile(envFilePath, newEnvContent);
+}
+
+interface settingsChanges {
+  promptForSensitive: ExtensionSetting[];
+  removeSensitive: ExtensionSetting[];
+  promptForEnv: ExtensionSetting[];
+  removeEnv: ExtensionSetting[];
+}
+function getSettingsChanges(
+  settings: ExtensionSetting[],
+  oldSettings: ExtensionSetting[],
+): settingsChanges {
+  const isSameSetting = (a: ExtensionSetting, b: ExtensionSetting) =>
+    a.envVar === b.envVar && (a.sensitive ?? false) === (b.sensitive ?? false);
+
+  const sensitiveOld = oldSettings.filter((s) => s.sensitive ?? false);
+  const sensitiveNew = settings.filter((s) => s.sensitive ?? false);
+  const envOld = oldSettings.filter((s) => !(s.sensitive ?? false));
+  const envNew = settings.filter((s) => !(s.sensitive ?? false));
+
+  return {
+    promptForSensitive: sensitiveNew.filter(
+      (s) => !sensitiveOld.some((old) => isSameSetting(s, old)),
+    ),
+    removeSensitive: sensitiveOld.filter(
+      (s) => !sensitiveNew.some((neu) => isSameSetting(s, neu)),
+    ),
+    promptForEnv: envNew.filter(
+      (s) => !envOld.some((old) => isSameSetting(s, old)),
+    ),
+    removeEnv: envOld.filter(
+      (s) => !envNew.some((neu) => isSameSetting(s, neu)),
+    ),
+  };
+}
+
+async function clearSettings(
+  envFilePath: string,
+  keychain: KeychainTokenStorage,
+) {
+  if (fsSync.existsSync(envFilePath)) {
+    await fs.writeFile(envFilePath, '');
+  }
+  if (!(await keychain.isAvailable())) {
+    return;
+  }
+  const secrets = await keychain.listSecrets();
+  for (const secret of secrets) {
+    await keychain.deleteSecret(secret);
+  }
+  return;
+}

packages/core/src/extension/gemini-converter.test.ts

@@ -0,0 +1,179 @@
+/**
+ * @license
+ * Copyright 2025 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+import { describe, it, expect, vi, beforeEach, afterEach } from 'vitest';
+import * as fs from 'node:fs';
+import * as path from 'node:path';
+import {
+  convertGeminiToQwenConfig,
+  isGeminiExtensionConfig,
+  type GeminiExtensionConfig,
+} from './gemini-converter.js';
+
+// Mock fs module
+vi.mock('node:fs', async (importOriginal) => {
+  const actual = await importOriginal<typeof import('node:fs')>();
+  return {
+    ...actual,
+    existsSync: vi.fn(),
+    readFileSync: vi.fn(),
+  };
+});
+
+describe('convertGeminiToQwenConfig', () => {
+  beforeEach(() => {
+    vi.clearAllMocks();
+  });
+
+  afterEach(() => {
+    vi.restoreAllMocks();
+  });
+
+  it('should convert basic Gemini config from directory', () => {
+    const mockDir = '/mock/extension/dir';
+    const geminiConfig: GeminiExtensionConfig = {
+      name: 'test-extension',
+      version: '1.0.0',
+    };
+
+    vi.mocked(fs.readFileSync).mockReturnValue(JSON.stringify(geminiConfig));
+
+    const result = convertGeminiToQwenConfig(mockDir);
+
+    expect(result.name).toBe('test-extension');
+    expect(result.version).toBe('1.0.0');
+    expect(fs.readFileSync).toHaveBeenCalledWith(
+      path.join(mockDir, 'gemini-extension.json'),
+      'utf-8',
+    );
+  });
+
+  it('should convert config with all optional fields', () => {
+    const mockDir = '/mock/extension/dir';
+    const geminiConfig = {
+      name: 'full-extension',
+      version: '2.0.0',
+      mcpServers: { server1: {} },
+      contextFileName: 'context.txt',
+      excludeTools: ['tool1', 'tool2'],
+      settings: [
+        { name: 'Setting1', envVar: 'VAR1', description: 'Test setting' },
+      ],
+    };
+
+    vi.mocked(fs.readFileSync).mockReturnValue(JSON.stringify(geminiConfig));
+
+    const result = convertGeminiToQwenConfig(mockDir);
+
+    expect(result.name).toBe('full-extension');
+    expect(result.version).toBe('2.0.0');
+    expect(result.mcpServers).toEqual({ server1: {} });
+    expect(result.contextFileName).toBe('context.txt');
+    expect(result.excludeTools).toEqual(['tool1', 'tool2']);
+    expect(result.settings).toHaveLength(1);
+    expect(result.settings?.[0].name).toBe('Setting1');
+  });
+
+  it('should throw error for missing name', () => {
+    const mockDir = '/mock/extension/dir';
+    const invalidConfig = {
+      version: '1.0.0',
+    };
+
+    vi.mocked(fs.readFileSync).mockReturnValue(JSON.stringify(invalidConfig));
+
+    expect(() => convertGeminiToQwenConfig(mockDir)).toThrow(
+      'Gemini extension config must have name and version fields',
+    );
+  });
+
+  it('should throw error for missing version', () => {
+    const mockDir = '/mock/extension/dir';
+    const invalidConfig = {
+      name: 'test-extension',
+    };
+
+    vi.mocked(fs.readFileSync).mockReturnValue(JSON.stringify(invalidConfig));
+
+    expect(() => convertGeminiToQwenConfig(mockDir)).toThrow(
+      'Gemini extension config must have name and version fields',
+    );
+  });
+});
+
+describe('isGeminiExtensionConfig', () => {
+  beforeEach(() => {
+    vi.clearAllMocks();
+  });
+
+  afterEach(() => {
+    vi.restoreAllMocks();
+  });
+
+  it('should identify Gemini extension directory with valid config', () => {
+    const mockDir = '/mock/extension/dir';
+    const mockConfig = {
+      name: 'test',
+      version: '1.0.0',
+      settings: [{ name: 'Test', envVar: 'TEST', description: 'Test' }],
+    };
+
+    vi.mocked(fs.existsSync).mockReturnValue(true);
+    vi.mocked(fs.readFileSync).mockReturnValue(JSON.stringify(mockConfig));
+
+    expect(isGeminiExtensionConfig(mockDir)).toBe(true);
+
+    expect(fs.existsSync).toHaveBeenCalledWith(
+      path.join(mockDir, 'gemini-extension.json'),
+    );
+  });
+
+  it('should return false when gemini-extension.json does not exist', () => {
+    const mockDir = '/mock/nonexistent/dir';
+
+    vi.mocked(fs.existsSync).mockReturnValue(false);
+
+    expect(isGeminiExtensionConfig(mockDir)).toBe(false);
+  });
+
+  it('should return false for invalid config content', () => {
+    const mockDir = '/mock/invalid/dir';
+
+    vi.mocked(fs.existsSync).mockReturnValue(true);
+    vi.mocked(fs.readFileSync).mockReturnValue('null');
+
+    expect(isGeminiExtensionConfig(mockDir)).toBe(false);
+  });
+
+  it('should return false for config missing required fields', () => {
+    const mockDir = '/mock/invalid/dir';
+    const invalidConfig = {
+      name: 'test',
+      // missing version
+    };
+
+    vi.mocked(fs.existsSync).mockReturnValue(true);
+    vi.mocked(fs.readFileSync).mockReturnValue(JSON.stringify(invalidConfig));
+
+    expect(isGeminiExtensionConfig(mockDir)).toBe(false);
+  });
+
+  it('should return true for basic config without settings', () => {
+    const mockDir = '/mock/extension/dir';
+    const basicConfig = {
+      name: 'test',
+      version: '1.0.0',
+    };
+
+    vi.mocked(fs.existsSync).mockReturnValue(true);
+    vi.mocked(fs.readFileSync).mockReturnValue(JSON.stringify(basicConfig));
+
+    expect(isGeminiExtensionConfig(mockDir)).toBe(true);
+  });
+});
+
+// Note: convertGeminiExtensionPackage() is tested through integration tests
+// as it requires real file system operations

packages/core/src/extension/gemini-converter.ts

@@ -0,0 +1,217 @@
+/**
+ * @license
+ * Copyright 2025 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+/**
+ * Converter for Gemini CLI extensions to Qwen Code format.
+ */
+
+import * as fs from 'node:fs';
+import * as path from 'node:path';
+import { glob } from 'glob';
+import type { ExtensionConfig, ExtensionSetting } from './extensionManager.js';
+import { ExtensionStorage } from './storage.js';
+import { convertTomlToMarkdown } from '../utils/toml-to-markdown-converter.js';
+
+export interface GeminiExtensionConfig {
+  name: string;
+  version: string;
+  mcpServers?: Record<string, unknown>;
+  contextFileName?: string | string[];
+  excludeTools?: string[];
+  settings?: ExtensionSetting[];
+}
+
+/**
+ * Converts a Gemini CLI extension config to Qwen Code format.
+ * @param extensionDir Path to the Gemini extension directory
+ * @returns Qwen ExtensionConfig
+ */
+export function convertGeminiToQwenConfig(
+  extensionDir: string,
+): ExtensionConfig {
+  const configFilePath = path.join(extensionDir, 'gemini-extension.json');
+  const configContent = fs.readFileSync(configFilePath, 'utf-8');
+  const geminiConfig: GeminiExtensionConfig = JSON.parse(configContent);
+  // Validate required fields
+  if (!geminiConfig.name || !geminiConfig.version) {
+    throw new Error(
+      'Gemini extension config must have name and version fields',
+    );
+  }
+
+  const settings: ExtensionSetting[] | undefined = geminiConfig.settings;
+
+  // Direct field mapping
+  return {
+    name: geminiConfig.name,
+    version: geminiConfig.version,
+    mcpServers: geminiConfig.mcpServers as ExtensionConfig['mcpServers'],
+    contextFileName: geminiConfig.contextFileName,
+    excludeTools: geminiConfig.excludeTools,
+    settings,
+  };
+}
+
+/**
+ * Converts a complete Gemini extension package to Qwen Code format.
+ * Creates a new temporary directory with:
+ * 1. Converted qwen-extension.json
+ * 2. Commands converted from TOML to MD
+ * 3. All other files/folders preserved
+ *
+ * @param extensionDir Path to the Gemini extension directory
+ * @returns Object containing converted config and the temporary directory path
+ */
+export async function convertGeminiExtensionPackage(
+  extensionDir: string,
+): Promise<{ config: ExtensionConfig; convertedDir: string }> {
+  const geminiConfig = convertGeminiToQwenConfig(extensionDir);
+
+  // Create temporary directory for converted extension
+  const tmpDir = await ExtensionStorage.createTmpDir();
+
+  try {
+    // Step 1: Copy all files and directories to temporary directory
+    await copyDirectory(extensionDir, tmpDir);
+
+    // Step 2: Convert TOML commands to Markdown in commands folder
+    const commandsDir = path.join(tmpDir, 'commands');
+    if (fs.existsSync(commandsDir)) {
+      await convertCommandsDirectory(commandsDir);
+    }
+
+    // Step 3: Create qwen-extension.json with converted config
+    const qwenConfigPath = path.join(tmpDir, 'qwen-extension.json');
+    fs.writeFileSync(
+      qwenConfigPath,
+      JSON.stringify(geminiConfig, null, 2),
+      'utf-8',
+    );
+
+    return {
+      config: geminiConfig,
+      convertedDir: tmpDir,
+    };
+  } catch (error) {
+    // Clean up temporary directory on error
+    try {
+      fs.rmSync(tmpDir, { recursive: true, force: true });
+    } catch {
+      // Ignore cleanup errors
+    }
+    throw error;
+  }
+}
+
+/**
+ * Recursively copies a directory and its contents.
+ * @param source Source directory path
+ * @param destination Destination directory path
+ */
+async function copyDirectory(
+  source: string,
+  destination: string,
+): Promise<void> {
+  // Create destination directory if it doesn't exist
+  if (!fs.existsSync(destination)) {
+    fs.mkdirSync(destination, { recursive: true });
+  }
+
+  const entries = fs.readdirSync(source, { withFileTypes: true });
+
+  for (const entry of entries) {
+    const sourcePath = path.join(source, entry.name);
+    const destPath = path.join(destination, entry.name);
+
+    if (entry.isDirectory()) {
+      await copyDirectory(sourcePath, destPath);
+    } else {
+      fs.copyFileSync(sourcePath, destPath);
+    }
+  }
+}
+
+/**
+ * Converts all TOML command files in a directory to Markdown format.
+ * @param commandsDir Path to the commands directory
+ */
+async function convertCommandsDirectory(commandsDir: string): Promise<void> {
+  // Find all .toml files in the commands directory
+  const tomlFiles = await glob('**/*.toml', {
+    cwd: commandsDir,
+    nodir: true,
+    dot: false,
+  });
+
+  // Convert each TOML file to Markdown
+  for (const relativeFile of tomlFiles) {
+    const tomlPath = path.join(commandsDir, relativeFile);
+
+    try {
+      // Read TOML file
+      const tomlContent = fs.readFileSync(tomlPath, 'utf-8');
+
+      // Convert to Markdown
+      const markdownContent = convertTomlToMarkdown(tomlContent);
+
+      // Generate Markdown file path (same location, .md extension)
+      const markdownPath = tomlPath.replace(/\.toml$/, '.md');
+
+      // Write Markdown file
+      fs.writeFileSync(markdownPath, markdownContent, 'utf-8');
+
+      // Delete original TOML file
+      fs.unlinkSync(tomlPath);
+    } catch (error) {
+      console.warn(
+        `Warning: Failed to convert command file ${relativeFile}: ${error instanceof Error ? error.message : String(error)}`,
+      );
+      // Continue with other files even if one fails
+    }
+  }
+}
+
+/**
+ * Checks if a config object is in Gemini format.
+ * This is a heuristic check based on typical Gemini extension patterns.
+ * @param config Configuration object to check
+ * @returns true if config appears to be Gemini format
+ */
+export function isGeminiExtensionConfig(extensionDir: string) {
+  const configFilePath = path.join(extensionDir, 'gemini-extension.json');
+  if (!fs.existsSync(configFilePath)) {
+    return false;
+  }
+
+  const configContent = fs.readFileSync(configFilePath, 'utf-8');
+  const parsedConfig = JSON.parse(configContent);
+
+  if (typeof parsedConfig !== 'object' || parsedConfig === null) {
+    return false;
+  }
+
+  const obj = parsedConfig as Record<string, unknown>;
+
+  // Must have name and version
+  if (typeof obj['name'] !== 'string' || typeof obj['version'] !== 'string') {
+    return false;
+  }
+
+  // Check for Gemini-specific settings format
+  if (obj['settings'] && Array.isArray(obj['settings'])) {
+    const firstSetting = obj['settings'][0];
+    if (
+      firstSetting &&
+      typeof firstSetting === 'object' &&
+      'envVar' in firstSetting
+    ) {
+      return true;
+    }
+  }
+
+  // If it has Gemini-specific fields but not Qwen-specific fields, likely Gemini
+  return true;
+}

packages/core/src/extension/github.test.ts

@@ -13,14 +13,17 @@ import {
   parseGitHubRepoForReleases,
 } from './github.js';
 import { simpleGit, type SimpleGit } from 'simple-git';
-import { ExtensionUpdateState } from '../../ui/state/extensions.js';
 import * as os from 'node:os';
 import * as fs from 'node:fs/promises';
 import * as fsSync from 'node:fs';
 import * as path from 'node:path';
 import * as tar from 'tar';
 import * as archiver from 'archiver';
-import type { GeminiCLIExtension } from '@qwen-code/qwen-code-core';
+import {
+  ExtensionUpdateState,
+  type Extension,
+  type ExtensionManager,
+} from './extensionManager.js';
 
 const mockPlatform = vi.hoisted(() => vi.fn());
 const mockArch = vi.hoisted(() => vi.fn());
@@ -123,119 +126,170 @@ describe('git extension helpers', () => {
       revparse: vi.fn(),
     };
 
+    const mockExtensionManager = {
+      loadExtensionConfig: vi.fn(),
+    } as unknown as ExtensionManager;
+
     beforeEach(() => {
       vi.mocked(simpleGit).mockReturnValue(mockGit as unknown as SimpleGit);
     });
 
-    it('should return NOT_UPDATABLE for non-git extensions', async () => {
-      const extension: GeminiCLIExtension = {
+    function createExtension(overrides: Partial<Extension> = {}): Extension {
+      return {
+        id: 'test-id',
         name: 'test',
         path: '/ext',
         version: '1.0.0',
         isActive: true,
+        config: { name: 'test', version: '1.0.0' },
+        contextFiles: [],
+        ...overrides,
+      };
+    }
+
+    it('should return NOT_UPDATABLE for non-git extensions', async () => {
+      const extension = createExtension({
         installMetadata: {
           type: 'link',
           source: '',
         },
-      };
-      let result: ExtensionUpdateState | undefined = undefined;
-      await checkForExtensionUpdate(
+      });
+      const result = await checkForExtensionUpdate(
         extension,
-        (newState) => (result = newState),
+        mockExtensionManager,
       );
       expect(result).toBe(ExtensionUpdateState.NOT_UPDATABLE);
     });
 
     it('should return ERROR if no remotes found', async () => {
-      const extension: GeminiCLIExtension = {
-        name: 'test',
-        path: '/ext',
-        version: '1.0.0',
-        isActive: true,
+      const extension = createExtension({
         installMetadata: {
           type: 'git',
           source: '',
         },
-      };
+      });
       mockGit.getRemotes.mockResolvedValue([]);
-      let result: ExtensionUpdateState | undefined = undefined;
-      await checkForExtensionUpdate(
+      const result = await checkForExtensionUpdate(
         extension,
-        (newState) => (result = newState),
+        mockExtensionManager,
       );
       expect(result).toBe(ExtensionUpdateState.ERROR);
     });
 
     it('should return UPDATE_AVAILABLE when remote hash is different', async () => {
-      const extension: GeminiCLIExtension = {
-        name: 'test',
-        path: '/ext',
-        version: '1.0.0',
-        isActive: true,
+      const extension = createExtension({
         installMetadata: {
           type: 'git',
           source: 'my/ext',
         },
-      };
+      });
       mockGit.getRemotes.mockResolvedValue([
         { name: 'origin', refs: { fetch: 'http://my-repo.com' } },
       ]);
       mockGit.listRemote.mockResolvedValue('remote-hash\tHEAD');
       mockGit.revparse.mockResolvedValue('local-hash');
 
-      let result: ExtensionUpdateState | undefined = undefined;
-      await checkForExtensionUpdate(
+      const result = await checkForExtensionUpdate(
         extension,
-        (newState) => (result = newState),
+        mockExtensionManager,
       );
       expect(result).toBe(ExtensionUpdateState.UPDATE_AVAILABLE);
     });
 
     it('should return UP_TO_DATE when remote and local hashes are the same', async () => {
-      const extension: GeminiCLIExtension = {
-        name: 'test',
-        path: '/ext',
-        version: '1.0.0',
-        isActive: true,
+      const extension = createExtension({
         installMetadata: {
           type: 'git',
           source: 'my/ext',
         },
-      };
+      });
       mockGit.getRemotes.mockResolvedValue([
         { name: 'origin', refs: { fetch: 'http://my-repo.com' } },
       ]);
       mockGit.listRemote.mockResolvedValue('same-hash\tHEAD');
       mockGit.revparse.mockResolvedValue('same-hash');
 
-      let result: ExtensionUpdateState | undefined = undefined;
-      await checkForExtensionUpdate(
+      const result = await checkForExtensionUpdate(
         extension,
-        (newState) => (result = newState),
+        mockExtensionManager,
       );
       expect(result).toBe(ExtensionUpdateState.UP_TO_DATE);
     });
 
     it('should return ERROR on git error', async () => {
-      const extension: GeminiCLIExtension = {
-        name: 'test',
-        path: '/ext',
-        version: '1.0.0',
-        isActive: true,
+      const extension = createExtension({
         installMetadata: {
           type: 'git',
           source: 'my/ext',
         },
-      };
+      });
       mockGit.getRemotes.mockRejectedValue(new Error('git error'));
 
-      let result: ExtensionUpdateState | undefined = undefined;
-      await checkForExtensionUpdate(
+      const result = await checkForExtensionUpdate(
         extension,
-        (newState) => (result = newState),
+        mockExtensionManager,
       );
       expect(result).toBe(ExtensionUpdateState.ERROR);
     });
+
+    it('should return UPDATE_AVAILABLE for local extension with different version', async () => {
+      const extension = createExtension({
+        version: '1.0.0',
+        installMetadata: {
+          type: 'local',
+          source: '/path/to/source',
+        },
+      });
+
+      const mockManager = {
+        loadExtensionConfig: vi.fn().mockReturnValue({
+          name: 'test',
+          version: '2.0.0',
+        }),
+      } as unknown as ExtensionManager;
+
+      const result = await checkForExtensionUpdate(extension, mockManager);
+      expect(result).toBe(ExtensionUpdateState.UPDATE_AVAILABLE);
+    });
+
+    it('should return UP_TO_DATE for local extension with same version', async () => {
+      const extension = createExtension({
+        version: '1.0.0',
+        installMetadata: {
+          type: 'local',
+          source: '/path/to/source',
+        },
+      });
+
+      const mockManager = {
+        loadExtensionConfig: vi.fn().mockReturnValue({
+          name: 'test',
+          version: '1.0.0',
+        }),
+      } as unknown as ExtensionManager;
+
+      const result = await checkForExtensionUpdate(extension, mockManager);
+      expect(result).toBe(ExtensionUpdateState.UP_TO_DATE);
+    });
+
+    it('should return NOT_UPDATABLE for local extension when source cannot be loaded', async () => {
+      const extension = createExtension({
+        version: '1.0.0',
+        installMetadata: {
+          type: 'local',
+          source: '/path/to/source',
+        },
+      });
+
+      const mockManager = {
+        loadExtensionConfig: vi.fn().mockImplementation(() => {
+          throw new Error('Cannot load config');
+        }),
+      } as unknown as ExtensionManager;
+
+      const result = await checkForExtensionUpdate(extension, mockManager);
+      expect(result).toBe(ExtensionUpdateState.NOT_UPDATABLE);
+    });
   });
 
   describe('findReleaseAsset', () => {

packages/core/src/extension/github.ts

@@ -5,19 +5,38 @@
  */
 
 import { simpleGit } from 'simple-git';
-import { getErrorMessage } from '../../utils/errors.js';
-import type {
-  ExtensionInstallMetadata,
-  GeminiCLIExtension,
-} from '@qwen-code/qwen-code-core';
-import { ExtensionUpdateState } from '../../ui/state/extensions.js';
+import { getErrorMessage } from '../utils/errors.js';
 import * as os from 'node:os';
 import * as https from 'node:https';
 import * as fs from 'node:fs';
 import * as path from 'node:path';
-import { EXTENSIONS_CONFIG_FILENAME, loadExtension } from '../extension.js';
+import { EXTENSIONS_CONFIG_FILENAME } from './variables.js';
 import * as tar from 'tar';
 import extract from 'extract-zip';
+import {
+  ExtensionUpdateState,
+  type Extension,
+  type ExtensionConfig,
+  type ExtensionManager,
+} from './extensionManager.js';
+import type { ExtensionInstallMetadata } from '../config/config.js';
+
+interface GithubReleaseData {
+  assets: Asset[];
+  tag_name: string;
+  tarball_url?: string;
+  zipball_url?: string;
+}
+
+interface Asset {
+  name: string;
+  browser_download_url: string;
+}
+
+export interface GitHubDownloadResult {
+  tagName: string;
+  type: 'git' | 'github-release';
+}
 
 function getGitHubToken(): string | undefined {
   return process.env['GITHUB_TOKEN'];
@@ -115,38 +134,40 @@ async function fetchReleaseFromGithub(
 }
 
 export async function checkForExtensionUpdate(
-  extension: GeminiCLIExtension,
-  setExtensionUpdateState: (updateState: ExtensionUpdateState) => void,
-  cwd: string = process.cwd(),
-): Promise<void> {
-  setExtensionUpdateState(ExtensionUpdateState.CHECKING_FOR_UPDATES);
+  extension: Extension,
+  extensionManager: ExtensionManager,
+): Promise<ExtensionUpdateState> {
   const installMetadata = extension.installMetadata;
   if (installMetadata?.type === 'local') {
-    const newExtension = loadExtension({
-      extensionDir: installMetadata.source,
-      workspaceDir: cwd,
-    });
-    if (!newExtension) {
+    let latestConfig: ExtensionConfig | undefined;
+    try {
+      latestConfig = extensionManager.loadExtensionConfig({
+        extensionDir: installMetadata.source,
+      });
+    } catch (e) {
+      console.error(
+        `Failed to check for update for local extension "${extension.name}". Could not load extension from source path: ${installMetadata.source}. Error: ${getErrorMessage(e)}`,
+      );
+      return ExtensionUpdateState.NOT_UPDATABLE;
+    }
+
+    if (!latestConfig) {
       console.error(
         `Failed to check for update for local extension "${extension.name}". Could not load extension from source path: ${installMetadata.source}`,
       );
-      setExtensionUpdateState(ExtensionUpdateState.ERROR);
-      return;
+      return ExtensionUpdateState.NOT_UPDATABLE;
     }
-    if (newExtension.config.version !== extension.version) {
-      setExtensionUpdateState(ExtensionUpdateState.UPDATE_AVAILABLE);
-      return;
+    if (latestConfig.version !== extension.version) {
+      return ExtensionUpdateState.UPDATE_AVAILABLE;
     }
-    setExtensionUpdateState(ExtensionUpdateState.UP_TO_DATE);
-    return;
+    return ExtensionUpdateState.UP_TO_DATE;
   }
   if (
     !installMetadata ||
     (installMetadata.type !== 'git' &&
       installMetadata.type !== 'github-release')
   ) {
-    setExtensionUpdateState(ExtensionUpdateState.NOT_UPDATABLE);
-    return;
+    return ExtensionUpdateState.NOT_UPDATABLE;
   }
   try {
     if (installMetadata.type === 'git') {
@@ -154,14 +175,12 @@ export async function checkForExtensionUpdate(
       const remotes = await git.getRemotes(true);
       if (remotes.length === 0) {
         console.error('No git remotes found.');
-        setExtensionUpdateState(ExtensionUpdateState.ERROR);
-        return;
+        return ExtensionUpdateState.ERROR;
       }
       const remoteUrl = remotes[0].refs.fetch;
       if (!remoteUrl) {
         console.error(`No fetch URL found for git remote ${remotes[0].name}.`);
-        setExtensionUpdateState(ExtensionUpdateState.ERROR);
-        return;
+        return ExtensionUpdateState.ERROR;
       }
 
       // Determine the ref to check on the remote.
@@ -171,8 +190,7 @@ export async function checkForExtensionUpdate(
 
       if (typeof lsRemoteOutput !== 'string' || lsRemoteOutput.trim() === '') {
         console.error(`Git ref ${refToCheck} not found.`);
-        setExtensionUpdateState(ExtensionUpdateState.ERROR);
-        return;
+        return ExtensionUpdateState.ERROR;
       }
 
       const remoteHash = lsRemoteOutput.split('\t')[0];
@@ -182,21 +200,17 @@ export async function checkForExtensionUpdate(
         console.error(
           `Unable to parse hash from git ls-remote output "${lsRemoteOutput}"`,
         );
-        setExtensionUpdateState(ExtensionUpdateState.ERROR);
-        return;
+        return ExtensionUpdateState.ERROR;
       }
       if (remoteHash === localHash) {
-        setExtensionUpdateState(ExtensionUpdateState.UP_TO_DATE);
-        return;
+        return ExtensionUpdateState.UP_TO_DATE;
       }
-      setExtensionUpdateState(ExtensionUpdateState.UPDATE_AVAILABLE);
-      return;
+      return ExtensionUpdateState.UPDATE_AVAILABLE;
     } else {
       const { source, releaseTag } = installMetadata;
       if (!source) {
         console.error(`No "source" provided for extension.`);
-        setExtensionUpdateState(ExtensionUpdateState.ERROR);
-        return;
+        return ExtensionUpdateState.ERROR;
       }
       const { owner, repo } = parseGitHubRepoForReleases(source);
 
@@ -206,30 +220,28 @@ export async function checkForExtensionUpdate(
         installMetadata.ref,
       );
       if (releaseData.tag_name !== releaseTag) {
-        setExtensionUpdateState(ExtensionUpdateState.UPDATE_AVAILABLE);
-        return;
+        return ExtensionUpdateState.UPDATE_AVAILABLE;
       }
-      setExtensionUpdateState(ExtensionUpdateState.UP_TO_DATE);
-      return;
+      return ExtensionUpdateState.UP_TO_DATE;
     }
   } catch (error) {
     console.error(
       `Failed to check for updates for extension "${installMetadata.source}": ${getErrorMessage(error)}`,
     );
-    setExtensionUpdateState(ExtensionUpdateState.ERROR);
-    return;
+    return ExtensionUpdateState.ERROR;
   }
 }
-export interface GitHubDownloadResult {
-  tagName: string;
-  type: 'git' | 'github-release';
-}
+
 export async function downloadFromGitHubRelease(
   installMetadata: ExtensionInstallMetadata,
   destination: string,
 ): Promise<GitHubDownloadResult> {
-  const { source, ref } = installMetadata;
-  const { owner, repo } = parseGitHubRepoForReleases(source);
+  const { source, ref, marketplace, type } = installMetadata;
+  const { owner, repo } = parseGitHubRepoForReleases(
+    type === 'marketplace' && marketplace
+      ? marketplace.marketplaceSource
+      : source,
+  );
 
   try {
     const releaseData = await fetchReleaseFromGithub(owner, repo, ref);
@@ -276,28 +288,32 @@ export async function downloadFromGitHubRelease(
     // For regular github releases, the repository is put inside of a top level
     // directory. In this case we should see exactly two file in the destination
     // dir, the archive and the directory. If we see that, validate that the
-    // dir has a qwen extension configuration file and then move all files
-    // from the directory up one level into the destination directory.
+    // dir has a qwen extension configuration file (or gemini-extension.json
+    // which will be converted later) and then move all files from the directory
+    // up one level into the destination directory.
     const entries = await fs.promises.readdir(destination, {
       withFileTypes: true,
     });
     if (entries.length === 2) {
       const lonelyDir = entries.find((entry) => entry.isDirectory());
-      if (
-        lonelyDir &&
-        fs.existsSync(
+      if (lonelyDir) {
+        const hasQwenConfig = fs.existsSync(
           path.join(destination, lonelyDir.name, EXTENSIONS_CONFIG_FILENAME),
-        )
-      ) {
-        const dirPathToExtract = path.join(destination, lonelyDir.name);
-        const extractedDirFiles = await fs.promises.readdir(dirPathToExtract);
-        for (const file of extractedDirFiles) {
-          await fs.promises.rename(
-            path.join(dirPathToExtract, file),
-            path.join(destination, file),
-          );
+        );
+        const hasGeminiConfig = fs.existsSync(
+          path.join(destination, lonelyDir.name, 'gemini-extension.json'),
+        );
+        if (hasQwenConfig || hasGeminiConfig) {
+          const dirPathToExtract = path.join(destination, lonelyDir.name);
+          const extractedDirFiles = await fs.promises.readdir(dirPathToExtract);
+          for (const file of extractedDirFiles) {
+            await fs.promises.rename(
+              path.join(dirPathToExtract, file),
+              path.join(destination, file),
+            );
+          }
+          await fs.promises.rmdir(dirPathToExtract);
         }
-        await fs.promises.rmdir(dirPathToExtract);
       }
     }
 
@@ -313,18 +329,6 @@ export async function downloadFromGitHubRelease(
   }
 }
 
-interface GithubReleaseData {
-  assets: Asset[];
-  tag_name: string;
-  tarball_url?: string;
-  zipball_url?: string;
-}
-
-interface Asset {
-  name: string;
-  browser_download_url: string;
-}
-
 export function findReleaseAsset(assets: Asset[]): Asset | undefined {
   const platform = os.platform();
   const arch = os.arch();

packages/core/src/extension/index.ts

@@ -0,0 +1,3 @@
+export * from './extensionManager.js';
+export * from './variables.js';
+export * from './github.js';

packages/core/src/extension/marketplace.test.ts

@@ -0,0 +1,78 @@
+/**
+ * @license
+ * Copyright 2025 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+import { describe, it, expect } from 'vitest';
+import { parseMarketplaceSource } from './marketplace.js';
+
+describe('Marketplace Installation', () => {
+  describe('parseMarketplaceSource', () => {
+    it('should parse valid marketplace source with http URL', () => {
+      const result = parseMarketplaceSource(
+        'http://example.com/marketplace:my-plugin',
+      );
+      expect(result).toEqual({
+        marketplaceSource: 'http://example.com/marketplace',
+        pluginName: 'my-plugin',
+      });
+    });
+
+    it('should parse valid marketplace source with https URL', () => {
+      const result = parseMarketplaceSource(
+        'https://github.com/example/marketplace:awesome-plugin',
+      );
+      expect(result).toEqual({
+        marketplaceSource: 'https://github.com/example/marketplace',
+        pluginName: 'awesome-plugin',
+      });
+    });
+
+    it('should handle plugin names with hyphens', () => {
+      const result = parseMarketplaceSource(
+        'https://example.com:my-super-plugin',
+      );
+      expect(result).toEqual({
+        marketplaceSource: 'https://example.com',
+        pluginName: 'my-super-plugin',
+      });
+    });
+
+    it('should handle URLs with ports', () => {
+      const result = parseMarketplaceSource(
+        'https://example.com:8080/marketplace:plugin',
+      );
+      expect(result).toEqual({
+        marketplaceSource: 'https://example.com:8080/marketplace',
+        pluginName: 'plugin',
+      });
+    });
+
+    it('should return null for source without colon separator', () => {
+      const result = parseMarketplaceSource('https://example.com/plugin');
+      expect(result).toBeNull();
+    });
+
+    it('should return null for source without URL', () => {
+      const result = parseMarketplaceSource('not-a-url:plugin');
+      expect(result).toBeNull();
+    });
+
+    it('should return null for source with empty plugin name', () => {
+      const result = parseMarketplaceSource('https://example.com:');
+      expect(result).toBeNull();
+    });
+
+    it('should use last colon as separator', () => {
+      // URLs with ports have colons, should use the last one
+      const result = parseMarketplaceSource(
+        'https://example.com:8080:my-plugin',
+      );
+      expect(result).toEqual({
+        marketplaceSource: 'https://example.com:8080',
+        pluginName: 'my-plugin',
+      });
+    });
+  });
+});

packages/core/src/extension/marketplace.ts

@@ -0,0 +1,259 @@
+/**
+ * @license
+ * Copyright 2025 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+/**
+ * This module handles installation of extensions from Claude marketplaces.
+ *
+ * A marketplace URL format: marketplace-url:plugin-name
+ * Example: https://github.com/example/marketplace:my-plugin
+ */
+
+import * as fs from 'node:fs';
+import * as path from 'node:path';
+import type { ExtensionConfig } from './extensionManager.js';
+import {
+  convertClaudeToQwenConfig,
+  mergeClaudeConfigs,
+  type ClaudeMarketplaceConfig,
+  type ClaudeMarketplacePluginConfig,
+  type ClaudePluginConfig,
+} from './claude-converter.js';
+import { cloneFromGit, downloadFromGitHubRelease } from './github.js';
+import type { ExtensionInstallMetadata } from '../config/config.js';
+
+export interface MarketplaceInstallOptions {
+  marketplaceUrl: string;
+  pluginName: string;
+  tempDir: string;
+  requestConsent: (consent: string) => Promise<boolean>;
+}
+
+export interface MarketplaceInstallResult {
+  config: ExtensionConfig;
+  sourcePath: string;
+  installMetadata: ExtensionInstallMetadata;
+}
+
+/**
+ * Parse marketplace install source string.
+ * Format: marketplace-url:plugin-name
+ */
+export function parseMarketplaceSource(source: string): {
+  marketplaceSource: string;
+  pluginName: string;
+} | null {
+  // Check if source contains a colon separator
+  const lastColonIndex = source.lastIndexOf(':');
+  if (lastColonIndex === -1) {
+    return null;
+  }
+
+  // Split at the last colon to separate URL from plugin name
+  const marketplaceSource = source.substring(0, lastColonIndex);
+  const pluginName = source.substring(lastColonIndex + 1);
+
+  // Validate that marketplace URL looks like a URL
+  if (
+    !marketplaceSource.startsWith('http://') &&
+    !marketplaceSource.startsWith('https://')
+  ) {
+    return null;
+  }
+
+  if (!pluginName || pluginName.length === 0) {
+    return null;
+  }
+
+  return { marketplaceSource, pluginName };
+}
+
+/**
+ * Install an extension from a Claude marketplace.
+ *
+ * Process:
+ * 1. Download marketplace repository
+ * 2. Parse marketplace.json
+ * 3. Find the specified plugin
+ * 4. Download/copy plugin source
+ * 5. Merge configurations (if strict mode)
+ * 6. Convert to Qwen format
+ */
+export async function installFromMarketplace(
+  options: MarketplaceInstallOptions,
+): Promise<MarketplaceInstallResult> {
+  const {
+    marketplaceUrl,
+    pluginName,
+    tempDir,
+    requestConsent: _requestConsent,
+  } = options;
+
+  // Step 1: Download marketplace repository
+  const marketplaceDir = path.join(tempDir, 'marketplace');
+  await fs.promises.mkdir(marketplaceDir, { recursive: true });
+
+  console.log(`Downloading marketplace from ${marketplaceUrl}...`);
+  const installMetadata: ExtensionInstallMetadata = {
+    source: marketplaceUrl,
+    type: 'git',
+  };
+
+  try {
+    await downloadFromGitHubRelease(installMetadata, marketplaceDir);
+  } catch {
+    await cloneFromGit(installMetadata, marketplaceDir);
+  }
+
+  // Step 2: Parse marketplace.json
+  const marketplaceConfigPath = path.join(marketplaceDir, 'marketplace.json');
+  if (!fs.existsSync(marketplaceConfigPath)) {
+    throw new Error(
+      `Marketplace configuration not found at ${marketplaceConfigPath}`,
+    );
+  }
+
+  const marketplaceConfigContent = await fs.promises.readFile(
+    marketplaceConfigPath,
+    'utf-8',
+  );
+  const marketplaceConfig: ClaudeMarketplaceConfig = JSON.parse(
+    marketplaceConfigContent,
+  );
+
+  // Step 3: Find the plugin
+  const pluginConfig = marketplaceConfig.plugins.find(
+    (p) => p.name.toLowerCase() === pluginName.toLowerCase(),
+  );
+
+  if (!pluginConfig) {
+    throw new Error(
+      `Plugin "${pluginName}" not found in marketplace. Available plugins: ${marketplaceConfig.plugins.map((p) => p.name).join(', ')}`,
+    );
+  }
+
+  // Step 4: Download/copy plugin source
+  const pluginDir = path.join(tempDir, 'plugin');
+  await fs.promises.mkdir(pluginDir, { recursive: true });
+
+  const pluginSource = await resolvePluginSource(
+    pluginConfig,
+    marketplaceDir,
+    pluginDir,
+  );
+
+  // Step 5: Merge configurations (if strict mode)
+  let finalPluginConfig: ClaudePluginConfig;
+  const strict = pluginConfig.strict ?? true;
+
+  if (strict) {
+    // Read plugin.json from plugin source
+    const pluginJsonPath = path.join(
+      pluginSource,
+      '.claude-plugin',
+      'plugin.json',
+    );
+    if (!fs.existsSync(pluginJsonPath)) {
+      throw new Error(
+        `Strict mode requires plugin.json at ${pluginJsonPath}, but file not found`,
+      );
+    }
+
+    const pluginJsonContent = await fs.promises.readFile(
+      pluginJsonPath,
+      'utf-8',
+    );
+    const basePluginConfig: ClaudePluginConfig = JSON.parse(pluginJsonContent);
+
+    // Merge marketplace config with plugin config
+    finalPluginConfig = mergeClaudeConfigs(pluginConfig, basePluginConfig);
+  } else {
+    // Use marketplace config directly
+    finalPluginConfig = pluginConfig;
+  }
+
+  // Step 6: Convert to Qwen format
+  const qwenConfig = convertClaudeToQwenConfig(finalPluginConfig);
+
+  return {
+    config: qwenConfig,
+    sourcePath: pluginSource,
+    installMetadata: {
+      source: `${marketplaceUrl}:${pluginName}`,
+      type: 'git', // Marketplace installs are treated as git installs
+    },
+  };
+}
+
+/**
+ * Resolve plugin source from marketplace plugin configuration.
+ * Returns the absolute path to the plugin source directory.
+ */
+async function resolvePluginSource(
+  pluginConfig: ClaudeMarketplacePluginConfig,
+  marketplaceDir: string,
+  pluginDir: string,
+): Promise<string> {
+  const source = pluginConfig.source;
+
+  // Handle string source (relative path or URL)
+  if (typeof source === 'string') {
+    // Check if it's a URL
+    if (source.startsWith('http://') || source.startsWith('https://')) {
+      // Download from URL
+      const installMetadata: ExtensionInstallMetadata = {
+        source,
+        type: 'git',
+      };
+      try {
+        await downloadFromGitHubRelease(installMetadata, pluginDir);
+      } catch {
+        await cloneFromGit(installMetadata, pluginDir);
+      }
+      return pluginDir;
+    }
+
+    // Relative path within marketplace
+    const pluginRoot = marketplaceDir;
+    const sourcePath = path.join(pluginRoot, source);
+
+    if (!fs.existsSync(sourcePath)) {
+      throw new Error(`Plugin source not found at ${sourcePath}`);
+    }
+
+    // Copy to plugin directory
+    await fs.promises.cp(sourcePath, pluginDir, { recursive: true });
+    return pluginDir;
+  }
+
+  // Handle object source (github or url)
+  if (source.source === 'github') {
+    const installMetadata: ExtensionInstallMetadata = {
+      source: `https://github.com/${source.repo}`,
+      type: 'git',
+    };
+    try {
+      await downloadFromGitHubRelease(installMetadata, pluginDir);
+    } catch {
+      await cloneFromGit(installMetadata, pluginDir);
+    }
+    return pluginDir;
+  }
+
+  if (source.source === 'url') {
+    const installMetadata: ExtensionInstallMetadata = {
+      source: source.url,
+      type: 'git',
+    };
+    try {
+      await downloadFromGitHubRelease(installMetadata, pluginDir);
+    } catch {
+      await cloneFromGit(installMetadata, pluginDir);
+    }
+    return pluginDir;
+  }
+
+  throw new Error(`Unsupported plugin source type: ${JSON.stringify(source)}`);
+}

packages/core/src/extension/override.test.ts

@@ -0,0 +1,110 @@
+/**
+ * @license
+ * Copyright 2025 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+import { describe, expect, it } from 'vitest';
+import { Override } from './override.js';
+
+describe('Override', () => {
+  it('should create an override from input', () => {
+    const override = Override.fromInput('/path/to/dir', true);
+    expect(override.baseRule).toBe(`/path/to/dir/`);
+    expect(override.isDisable).toBe(false);
+    expect(override.includeSubdirs).toBe(true);
+  });
+
+  it('should create a disable override from input', () => {
+    const override = Override.fromInput('!/path/to/dir', false);
+    expect(override.baseRule).toBe(`/path/to/dir/`);
+    expect(override.isDisable).toBe(true);
+    expect(override.includeSubdirs).toBe(false);
+  });
+
+  it('should create an override from a file rule', () => {
+    const override = Override.fromFileRule('/path/to/dir');
+    expect(override.baseRule).toBe('/path/to/dir');
+    expect(override.isDisable).toBe(false);
+    expect(override.includeSubdirs).toBe(false);
+  });
+
+  it('should create a disable override from a file rule', () => {
+    const override = Override.fromFileRule('!/path/to/dir/');
+    expect(override.isDisable).toBe(true);
+    expect(override.baseRule).toBe('/path/to/dir/');
+    expect(override.includeSubdirs).toBe(false);
+  });
+
+  it('should create an override with subdirs from a file rule', () => {
+    const override = Override.fromFileRule('/path/to/dir/*');
+    expect(override.baseRule).toBe('/path/to/dir/');
+    expect(override.isDisable).toBe(false);
+    expect(override.includeSubdirs).toBe(true);
+  });
+
+  it('should correctly identify conflicting overrides', () => {
+    const override1 = Override.fromInput('/path/to/dir', true);
+    const override2 = Override.fromInput('/path/to/dir', false);
+    expect(override1.conflictsWith(override2)).toBe(true);
+  });
+
+  it('should correctly identify non-conflicting overrides', () => {
+    const override1 = Override.fromInput('/path/to/dir', true);
+    const override2 = Override.fromInput('/path/to/another/dir', true);
+    expect(override1.conflictsWith(override2)).toBe(false);
+  });
+
+  it('should correctly identify equal overrides', () => {
+    const override1 = Override.fromInput('/path/to/dir', true);
+    const override2 = Override.fromInput('/path/to/dir', true);
+    expect(override1.isEqualTo(override2)).toBe(true);
+  });
+
+  it('should correctly identify unequal overrides', () => {
+    const override1 = Override.fromInput('/path/to/dir', true);
+    const override2 = Override.fromInput('!/path/to/dir', true);
+    expect(override1.isEqualTo(override2)).toBe(false);
+  });
+
+  it('should generate the correct regex', () => {
+    const override = Override.fromInput('/path/to/dir', true);
+    const regex = override.asRegex();
+    expect(regex.test('/path/to/dir/')).toBe(true);
+    expect(regex.test('/path/to/dir/subdir')).toBe(true);
+    expect(regex.test('/path/to/another/dir')).toBe(false);
+  });
+
+  it('should correctly identify child overrides', () => {
+    const parent = Override.fromInput('/path/to/dir', true);
+    const child = Override.fromInput('/path/to/dir/subdir', false);
+    expect(child.isChildOf(parent)).toBe(true);
+  });
+
+  it('should correctly identify child overrides with glob', () => {
+    const parent = Override.fromInput('/path/to/dir/*', true);
+    const child = Override.fromInput('/path/to/dir/subdir', false);
+    expect(child.isChildOf(parent)).toBe(true);
+  });
+
+  it('should correctly identify non-child overrides', () => {
+    const parent = Override.fromInput('/path/to/dir', true);
+    const other = Override.fromInput('/path/to/another/dir', false);
+    expect(other.isChildOf(parent)).toBe(false);
+  });
+
+  it('should generate the correct output string', () => {
+    const override = Override.fromInput('/path/to/dir', true);
+    expect(override.output()).toBe(`/path/to/dir/*`);
+  });
+
+  it('should generate the correct output string for a disable override', () => {
+    const override = Override.fromInput('!/path/to/dir', false);
+    expect(override.output()).toBe(`!/path/to/dir/`);
+  });
+
+  it('should disable a path based on a disable override rule', () => {
+    const override = Override.fromInput('!/path/to/dir', false);
+    expect(override.output()).toBe(`!/path/to/dir/`);
+  });
+});

packages/core/src/extension/override.ts

@@ -0,0 +1,102 @@
+/**
+ * @license
+ * Copyright 2025 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+export interface ExtensionEnablementConfig {
+  overrides: string[];
+}
+
+export interface AllExtensionsEnablementConfig {
+  [extensionName: string]: ExtensionEnablementConfig;
+}
+
+export class Override {
+  constructor(
+    public baseRule: string,
+    public isDisable: boolean,
+    public includeSubdirs: boolean,
+  ) {}
+
+  static fromInput(inputRule: string, includeSubdirs: boolean): Override {
+    const isDisable = inputRule.startsWith('!');
+    let baseRule = isDisable ? inputRule.substring(1) : inputRule;
+    baseRule = ensureLeadingAndTrailingSlash(baseRule);
+    return new Override(baseRule, isDisable, includeSubdirs);
+  }
+
+  static fromFileRule(fileRule: string): Override {
+    const isDisable = fileRule.startsWith('!');
+    let baseRule = isDisable ? fileRule.substring(1) : fileRule;
+    const includeSubdirs = baseRule.endsWith('*');
+    baseRule = includeSubdirs
+      ? baseRule.substring(0, baseRule.length - 1)
+      : baseRule;
+    return new Override(baseRule, isDisable, includeSubdirs);
+  }
+
+  conflictsWith(other: Override): boolean {
+    if (this.baseRule === other.baseRule) {
+      return (
+        this.includeSubdirs !== other.includeSubdirs ||
+        this.isDisable !== other.isDisable
+      );
+    }
+    return false;
+  }
+
+  isEqualTo(other: Override): boolean {
+    return (
+      this.baseRule === other.baseRule &&
+      this.includeSubdirs === other.includeSubdirs &&
+      this.isDisable === other.isDisable
+    );
+  }
+
+  asRegex(): RegExp {
+    return globToRegex(`${this.baseRule}${this.includeSubdirs ? '*' : ''}`);
+  }
+
+  isChildOf(parent: Override) {
+    if (!parent.includeSubdirs) {
+      return false;
+    }
+    return parent.asRegex().test(this.baseRule);
+  }
+
+  output(): string {
+    return `${this.isDisable ? '!' : ''}${this.baseRule}${this.includeSubdirs ? '*' : ''}`;
+  }
+
+  matchesPath(path: string) {
+    return this.asRegex().test(path);
+  }
+}
+
+const ensureLeadingAndTrailingSlash = function (dirPath: string): string {
+  // Normalize separators to forward slashes for consistent matching across platforms.
+  let result = dirPath.replace(/\\/g, '/');
+  if (result.charAt(0) !== '/') {
+    result = '/' + result;
+  }
+  if (result.charAt(result.length - 1) !== '/') {
+    result = result + '/';
+  }
+  return result;
+};
+
+/**
+ * Converts a glob pattern to a RegExp object.
+ * This is a simplified implementation that supports `*`.
+ *
+ * @param glob The glob pattern to convert.
+ * @returns A RegExp object.
+ */
+function globToRegex(glob: string): RegExp {
+  const regexString = glob
+    .replace(/[.+?^${}()|[\]\\]/g, '\\$&') // Escape special regex characters
+    .replace(/(\/?)\*/g, '($1.*)?'); // Convert * to optional group
+
+  return new RegExp(`^${regexString}$`);
+}

packages/core/src/extension/settings.test.ts

@@ -0,0 +1,138 @@
+/**
+ * @license
+ * Copyright 2025 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+import { describe, it, expect } from 'vitest';
+import { parseEnvFile, generateEnvFile, validateSettings } from './settings.js';
+import type { ExtensionSetting } from './extensionManager.js';
+
+describe('Extension Settings', () => {
+  describe('parseEnvFile', () => {
+    it('should parse simple KEY=VALUE pairs', () => {
+      const content = 'API_KEY=abc123\nSERVER_URL=http://example.com';
+      const result = parseEnvFile(content);
+      expect(result).toEqual({
+        API_KEY: 'abc123',
+        SERVER_URL: 'http://example.com',
+      });
+    });
+
+    it('should skip empty lines and comments', () => {
+      const content = `
+# This is a comment
+API_KEY=secret
+
+# Another comment
+DEBUG=true
+`;
+      const result = parseEnvFile(content);
+      expect(result).toEqual({
+        API_KEY: 'secret',
+        DEBUG: 'true',
+      });
+    });
+
+    it('should handle quoted values', () => {
+      const content = `API_KEY="my secret key"\nPATH='/usr/local/bin'`;
+      const result = parseEnvFile(content);
+      expect(result).toEqual({
+        API_KEY: 'my secret key',
+        PATH: '/usr/local/bin',
+      });
+    });
+
+    it('should ignore invalid lines', () => {
+      const content = 'VALID=value\nINVALID LINE\nANOTHER=valid';
+      const result = parseEnvFile(content);
+      expect(result).toEqual({
+        VALID: 'value',
+        ANOTHER: 'valid',
+      });
+    });
+  });
+
+  describe('generateEnvFile', () => {
+    it('should generate properly formatted .env content', () => {
+      const settings = {
+        API_KEY: 'secret123',
+        DEBUG: 'true',
+      };
+      const result = generateEnvFile(settings);
+      expect(result).toContain('API_KEY=secret123');
+      expect(result).toContain('DEBUG=true');
+      expect(result).toContain('# Extension Settings');
+    });
+
+    it('should quote values with spaces', () => {
+      const settings = {
+        MESSAGE: 'Hello World',
+        PATH: '/usr/local/bin',
+      };
+      const result = generateEnvFile(settings);
+      expect(result).toContain('MESSAGE="Hello World"');
+      expect(result).toContain('PATH=/usr/local/bin');
+    });
+  });
+
+  describe('validateSettings', () => {
+    it('should pass validation for valid string settings', () => {
+      const settingsConfig: ExtensionSetting[] = [
+        {
+          name: 'API Key',
+          description: 'Your API key for the service',
+          envVar: 'API_KEY',
+        },
+      ];
+      const settings = { API_KEY: 'my-key' };
+      const errors = validateSettings(settings, settingsConfig);
+      expect(errors).toHaveLength(0);
+    });
+
+    it('should fail validation for non-string values', () => {
+      const settingsConfig: ExtensionSetting[] = [
+        {
+          name: 'API Key',
+          description: 'Your API key for the service',
+          envVar: 'API_KEY',
+        },
+      ];
+      // In TypeScript, this would be caught at compile time,
+      // but at runtime we check the type
+      const settings = { API_KEY: 123 as unknown as string };
+      const errors = validateSettings(settings, settingsConfig);
+      expect(errors).toHaveLength(1);
+      expect(errors[0]).toContain('API Key');
+      expect(errors[0]).toContain('string');
+    });
+
+    it('should allow undefined/missing settings (all settings are optional)', () => {
+      const settingsConfig: ExtensionSetting[] = [
+        {
+          name: 'Optional Setting',
+          description: 'An optional setting',
+          envVar: 'OPTIONAL_VAR',
+        },
+      ];
+
+      const settings = {};
+      const errors = validateSettings(settings, settingsConfig);
+      expect(errors).toHaveLength(0);
+    });
+
+    it('should validate sensitive settings the same way', () => {
+      const settingsConfig: ExtensionSetting[] = [
+        {
+          name: 'Secret Key',
+          description: 'Your secret key',
+          envVar: 'SECRET_KEY',
+          sensitive: true,
+        },
+      ];
+
+      const validSettings = { SECRET_KEY: 'super-secret' };
+      expect(validateSettings(validSettings, settingsConfig)).toHaveLength(0);
+    });
+  });
+});

packages/core/src/extension/settings.ts

@@ -0,0 +1,149 @@
+/**
+ * @license
+ * Copyright 2025 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+/**
+ * This module handles extension settings management.
+ * Settings are stored in .env files within extension directories.
+ */
+
+import * as fs from 'node:fs';
+import * as path from 'node:path';
+import type { ExtensionSetting } from './extensionManager.js';
+
+/**
+ * Parse .env file content into key-value pairs.
+ * Simple parser that handles:
+ * - KEY=VALUE format
+ * - Comments starting with #
+ * - Empty lines
+ */
+export function parseEnvFile(content: string): Record<string, string> {
+  const result: Record<string, string> = {};
+  const lines = content.split('\n');
+
+  for (const line of lines) {
+    const trimmed = line.trim();
+
+    // Skip empty lines and comments
+    if (!trimmed || trimmed.startsWith('#')) {
+      continue;
+    }
+
+    // Parse KEY=VALUE
+    const equalIndex = trimmed.indexOf('=');
+    if (equalIndex === -1) {
+      continue; // Invalid line, skip
+    }
+
+    const key = trimmed.substring(0, equalIndex).trim();
+    const value = trimmed.substring(equalIndex + 1).trim();
+
+    // Remove quotes if present
+    let cleanValue = value;
+    if (
+      (value.startsWith('"') && value.endsWith('"')) ||
+      (value.startsWith("'") && value.endsWith("'"))
+    ) {
+      cleanValue = value.substring(1, value.length - 1);
+    }
+
+    result[key] = cleanValue;
+  }
+
+  return result;
+}
+
+/**
+ * Generate .env file content from key-value pairs.
+ */
+export function generateEnvFile(settings: Record<string, string>): string {
+  const lines: string[] = [];
+
+  lines.push('# Extension Settings');
+  lines.push('# Generated by Qwen Code');
+  lines.push('');
+
+  for (const [key, value] of Object.entries(settings)) {
+    // Quote values that contain spaces
+    const quotedValue = value.includes(' ') ? `"${value}"` : value;
+    lines.push(`${key}=${quotedValue}`);
+  }
+
+  return lines.join('\n') + '\n';
+}
+
+/**
+ * Load settings from extension .env file.
+ */
+export async function loadExtensionSettings(
+  extensionPath: string,
+): Promise<Record<string, string>> {
+  const envPath = path.join(extensionPath, '.env');
+
+  try {
+    const content = await fs.promises.readFile(envPath, 'utf-8');
+    return parseEnvFile(content);
+  } catch (error) {
+    // If .env file doesn't exist, return empty object
+    if ((error as NodeJS.ErrnoException).code === 'ENOENT') {
+      return {};
+    }
+    throw error;
+  }
+}
+
+/**
+ * Save settings to extension .env file.
+ */
+export async function saveExtensionSettings(
+  extensionPath: string,
+  settings: Record<string, string>,
+): Promise<void> {
+  const envPath = path.join(extensionPath, '.env');
+  const content = generateEnvFile(settings);
+  await fs.promises.writeFile(envPath, content, 'utf-8');
+}
+
+/**
+ * Validate settings against configuration.
+ * Returns array of validation errors (empty if valid).
+ *
+ * Note: This validates that environment variables are properly set.
+ * In Gemini Extension format, all settings are treated as strings.
+ */
+export function validateSettings(
+  settings: Record<string, string>,
+  settingsConfig: ExtensionSetting[],
+): string[] {
+  const errors: string[] = [];
+
+  for (const config of settingsConfig) {
+    const value = settings[config.envVar];
+
+    // Basic validation - check if value exists and is not empty
+    // Note: All settings are optional in Gemini Extension format
+    if (value !== undefined && typeof value !== 'string') {
+      errors.push(
+        `Setting "${config.name}" (${config.envVar}) must be a string`,
+      );
+    }
+  }
+
+  return errors;
+}
+
+/**
+ * Merge extension settings into process environment.
+ * This allows MCP servers and other extension components to access settings.
+ */
+export function applySettingsToEnv(settings: Record<string, string>): void {
+  for (const [key, value] of Object.entries(settings)) {
+    // Only set if not already defined in process.env
+    if (process.env[key] === undefined) {
+      process.env[key] = value;
+    }
+  }
+}

packages/core/src/extension/storage.test.ts

@@ -0,0 +1,101 @@
+/**
+ * @license
+ * Copyright 2025 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+import { describe, it, expect, vi, beforeEach, afterEach } from 'vitest';
+import { ExtensionStorage } from './storage.js';
+import * as os from 'node:os';
+import * as path from 'node:path';
+import * as fs from 'node:fs';
+import {
+  EXTENSION_SETTINGS_FILENAME,
+  EXTENSIONS_CONFIG_FILENAME,
+} from './variables.js';
+import { Storage } from '../config/storage.js';
+
+vi.mock('node:os');
+vi.mock('node:fs', async (importOriginal) => {
+  const actual = await importOriginal<typeof fs>();
+  return {
+    ...actual,
+    promises: {
+      ...actual.promises,
+      mkdtemp: vi.fn(),
+    },
+  };
+});
+vi.mock('@google/gemini-cli-core');
+
+describe('ExtensionStorage', () => {
+  const mockHomeDir = '/mock/home';
+  const extensionName = 'test-extension';
+  let storage: ExtensionStorage;
+
+  beforeEach(() => {
+    vi.mocked(os.homedir).mockReturnValue(mockHomeDir);
+    vi.mocked(Storage).mockImplementation(
+      () =>
+        ({
+          getExtensionsDir: () =>
+            path.join(mockHomeDir, '.gemini', 'extensions'),
+        }) as any, // eslint-disable-line @typescript-eslint/no-explicit-any
+    );
+    storage = new ExtensionStorage(extensionName);
+  });
+
+  afterEach(() => {
+    vi.restoreAllMocks();
+  });
+
+  it('should return the correct extension directory', () => {
+    const expectedDir = path.join(
+      mockHomeDir,
+      '.gemini',
+      'extensions',
+      extensionName,
+    );
+    expect(storage.getExtensionDir()).toBe(expectedDir);
+  });
+
+  it('should return the correct config path', () => {
+    const expectedPath = path.join(
+      mockHomeDir,
+      '.gemini',
+      'extensions',
+      extensionName,
+      EXTENSIONS_CONFIG_FILENAME, // EXTENSIONS_CONFIG_FILENAME
+    );
+    expect(storage.getConfigPath()).toBe(expectedPath);
+  });
+
+  it('should return the correct env file path', () => {
+    const expectedPath = path.join(
+      mockHomeDir,
+      '.gemini',
+      'extensions',
+      extensionName,
+      EXTENSION_SETTINGS_FILENAME, // EXTENSION_SETTINGS_FILENAME
+    );
+    expect(storage.getEnvFilePath()).toBe(expectedPath);
+  });
+
+  it('should return the correct user extensions directory', () => {
+    const expectedDir = path.join(mockHomeDir, '.gemini', 'extensions');
+    expect(ExtensionStorage.getUserExtensionsDir()).toBe(expectedDir);
+  });
+
+  it('should create a temporary directory', async () => {
+    const mockTmpDir = '/tmp/gemini-extension-123';
+    vi.mocked(fs.promises.mkdtemp).mockResolvedValue(mockTmpDir);
+    vi.mocked(os.tmpdir).mockReturnValue('/tmp');
+
+    const result = await ExtensionStorage.createTmpDir();
+
+    expect(fs.promises.mkdtemp).toHaveBeenCalledWith(
+      path.join('/tmp', 'gemini-extension'),
+    );
+    expect(result).toBe(mockTmpDir);
+  });
+});

packages/core/src/extension/storage.ts

@@ -0,0 +1,40 @@
+import { Storage } from '../config/storage.js';
+import path from 'node:path';
+import * as os from 'node:os';
+import {
+  EXTENSION_SETTINGS_FILENAME,
+  EXTENSIONS_CONFIG_FILENAME,
+} from './variables.js';
+import * as fs from 'node:fs';
+
+export class ExtensionStorage {
+  private readonly extensionName: string;
+
+  constructor(extensionName: string) {
+    this.extensionName = extensionName;
+  }
+
+  getExtensionDir(): string {
+    return path.join(
+      ExtensionStorage.getUserExtensionsDir(),
+      this.extensionName,
+    );
+  }
+
+  getConfigPath(): string {
+    return path.join(this.getExtensionDir(), EXTENSIONS_CONFIG_FILENAME);
+  }
+
+  getEnvFilePath(): string {
+    return path.join(this.getExtensionDir(), EXTENSION_SETTINGS_FILENAME);
+  }
+
+  static getUserExtensionsDir(): string {
+    const storage = new Storage(os.homedir());
+    return storage.getExtensionsDir();
+  }
+
+  static async createTmpDir(): Promise<string> {
+    return await fs.promises.mkdtemp(path.join(os.tmpdir(), 'qwen-extension'));
+  }
+}

packages/core/src/extension/variableSchema.ts

@@ -17,7 +17,7 @@ export interface VariableSchema {
 
 export interface LoadExtensionContext {
   extensionDir: string;
-  workspaceDir: string;
+  workspaceDir?: string;
 }
 
 const PATH_SEPARATOR_DEFINITION = {
@@ -30,6 +30,10 @@ export const VARIABLE_SCHEMA = {
     type: 'string',
     description: 'The path of the extension in the filesystem.',
   },
+  CLAUDE_PLUGIN_ROOT: {
+    type: 'string',
+    description: 'The path of the extension in the filesystem.',
+  },
   workspacePath: {
     type: 'string',
     description: 'The absolute path of the current workspace.',

packages/core/src/extension/variables.ts

@@ -5,6 +5,13 @@
  */
 
 import { type VariableSchema, VARIABLE_SCHEMA } from './variableSchema.js';
+import path from 'node:path';
+import { QWEN_DIR } from '../config/storage.js';
+
+export const EXTENSIONS_DIRECTORY_NAME = path.join(QWEN_DIR, 'extensions');
+export const EXTENSIONS_CONFIG_FILENAME = 'qwen-extension.json';
+export const INSTALL_METADATA_FILENAME = '.qwen-extension-install.json';
+export const EXTENSION_SETTINGS_FILENAME = '.env';
 
 export type JsonObject = { [key: string]: JsonValue };
 export type JsonArray = JsonValue[];

packages/core/src/index.ts

@@ -53,6 +53,8 @@ export * from './utils/subagentGenerator.js';
 export * from './utils/projectSummary.js';
 export * from './utils/promptIdContext.js';
 export * from './utils/thoughtUtils.js';
+export * from './utils/toml-to-markdown-converter.js';
+export * from './utils/yaml-parser.js';
 
 // Export services
 export * from './services/fileDiscoveryService.js';
@@ -83,6 +85,9 @@ export * from './subagents/index.js';
 // Export skills
 export * from './skills/index.js';
 
+// Export extension
+export * from './extension/index.js';
+
 // Export prompt logic
 export * from './prompts/mcp-prompts.js';
 
@@ -115,6 +120,7 @@ export type {
   OAuthCredentials,
 } from './mcp/token-storage/types.js';
 export { MCPOAuthTokenStorage } from './mcp/oauth-token-storage.js';
+export { KeychainTokenStorage } from './mcp/token-storage/keychain-token-storage.js';
 export type { MCPOAuthConfig } from './mcp/oauth-provider.js';
 export type {
   OAuthAuthorizationServerMetadata,

packages/core/src/mcp/token-storage/keychain-token-storage.ts

@@ -22,6 +22,7 @@ interface Keytar {
 }
 
 const KEYCHAIN_TEST_PREFIX = '__keychain_test__';
+const SECRET_PREFIX = '__secret__';
 
 export class KeychainTokenStorage extends BaseTokenStorage {
   private keychainAvailable: boolean | null = null;
@@ -137,6 +138,7 @@ export class KeychainTokenStorage extends BaseTokenStorage {
       const credentials = await keytar.findCredentials(this.serviceName);
       return credentials
         .filter((cred) => !cred.account.startsWith(KEYCHAIN_TEST_PREFIX))
+        .filter((cred) => !cred.account.startsWith(SECRET_PREFIX))
         .map((cred: { account: string }) => cred.account);
     } catch (error) {
       console.error('Failed to list servers from keychain:', error);
@@ -156,9 +158,9 @@ export class KeychainTokenStorage extends BaseTokenStorage {
 
     const result = new Map<string, OAuthCredentials>();
     try {
-      const credentials = (
-        await keytar.findCredentials(this.serviceName)
-      ).filter((c) => !c.account.startsWith(KEYCHAIN_TEST_PREFIX));
+      const credentials = (await keytar.findCredentials(this.serviceName))
+        .filter((c) => !c.account.startsWith(KEYCHAIN_TEST_PREFIX))
+        .filter((c) => !c.account.startsWith(SECRET_PREFIX));
 
       for (const cred of credentials) {
         try {
@@ -248,4 +250,62 @@ export class KeychainTokenStorage extends BaseTokenStorage {
   async isAvailable(): Promise<boolean> {
     return this.checkKeychainAvailability();
   }
+
+  async setSecret(key: string, value: string): Promise<void> {
+    if (!(await this.checkKeychainAvailability())) {
+      throw new Error('Keychain is not available');
+    }
+    const keytar = await this.getKeytar();
+    if (!keytar) {
+      throw new Error('Keytar module not available');
+    }
+    await keytar.setPassword(this.serviceName, `${SECRET_PREFIX}${key}`, value);
+  }
+
+  async getSecret(key: string): Promise<string | null> {
+    if (!(await this.checkKeychainAvailability())) {
+      throw new Error('Keychain is not available');
+    }
+    const keytar = await this.getKeytar();
+    if (!keytar) {
+      throw new Error('Keytar module not available');
+    }
+    return keytar.getPassword(this.serviceName, `${SECRET_PREFIX}${key}`);
+  }
+
+  async deleteSecret(key: string): Promise<void> {
+    if (!(await this.checkKeychainAvailability())) {
+      throw new Error('Keychain is not available');
+    }
+    const keytar = await this.getKeytar();
+    if (!keytar) {
+      throw new Error('Keytar module not available');
+    }
+    const deleted = await keytar.deletePassword(
+      this.serviceName,
+      `${SECRET_PREFIX}${key}`,
+    );
+    if (!deleted) {
+      throw new Error(`No secret found for key: ${key}`);
+    }
+  }
+
+  async listSecrets(): Promise<string[]> {
+    if (!(await this.checkKeychainAvailability())) {
+      throw new Error('Keychain is not available');
+    }
+    const keytar = await this.getKeytar();
+    if (!keytar) {
+      throw new Error('Keytar module not available');
+    }
+    try {
+      const credentials = await keytar.findCredentials(this.serviceName);
+      return credentials
+        .filter((cred) => cred.account.startsWith(SECRET_PREFIX))
+        .map((cred) => cred.account.substring(SECRET_PREFIX.length));
+    } catch (error) {
+      console.error('Failed to list secrets from keychain:', error);
+      return [];
+    }
+  }
 }

packages/core/src/skills/skill-manager.ts

@@ -76,7 +76,7 @@ export class SkillManager {
 
     const levelsToCheck: SkillLevel[] = options.level
       ? [options.level]
-      : ['project', 'user'];
+      : ['project', 'user', 'extension'];
 
     // Check if we should use cache or force refresh
     const shouldUseCache = !options.force && this.skillsCache !== null;
@@ -86,12 +86,12 @@ export class SkillManager {
       await this.refreshCache();
     }
 
-    // Collect skills from each level (project takes precedence over user)
+    // Collect skills from each level (project takes precedence over user over extension)
     for (const level of levelsToCheck) {
       const levelSkills = this.skillsCache?.get(level) || [];
 
       for (const skill of levelSkills) {
-        // Skip if we've already seen this name (precedence: project > user)
+        // Skip if we've already seen this name (precedence: project > user > extension)
         if (seenNames.has(skill.name)) {
           continue;
         }
@@ -210,7 +210,7 @@ export class SkillManager {
     const skillsCache = new Map<SkillLevel, SkillConfig[]>();
     this.parseErrors.clear();
 
-    const levels: SkillLevel[] = ['project', 'user'];
+    const levels: SkillLevel[] = ['project', 'user', 'extension'];
 
     for (const level of levels) {
       const levelSkills = await this.listSkillsAtLevel(level);
@@ -376,12 +376,22 @@ export class SkillManager {
       return [];
     }
 
-    const baseDir = this.getSkillsBaseDir(level);
+    // if (level === 'extension') {
+    //   const extensions = this.config.getExtensions();
+    // }
 
+    const baseDir = this.getSkillsBaseDir(level);
+    const skills = await this.loadSkillsFromDir(baseDir, level);
+    return skills;
+  }
+
+  async loadSkillsFromDir(
+    baseDir: string,
+    level: SkillLevel,
+  ): Promise<SkillConfig[]> {
     try {
       const entries = await fs.readdir(baseDir, { withFileTypes: true });
       const skills: SkillConfig[] = [];
-
       for (const entry of entries) {
         // Only process directories (each skill is a directory)
         if (!entry.isDirectory()) continue;
@@ -409,7 +419,6 @@ export class SkillManager {
           continue;
         }
       }
-
       return skills;
     } catch (_error) {
       // Directory doesn't exist or can't be read

packages/core/src/skills/types.ts

@@ -8,8 +8,9 @@
  * Represents the storage level for a skill configuration.
  * - 'project': Stored in `.qwen/skills/` within the project directory
  * - 'user': Stored in `~/.qwen/skills/` in the user's home directory
+ * - 'extension': Provided by an installed extension
  */
-export type SkillLevel = 'project' | 'user';
+export type SkillLevel = 'project' | 'user' | 'extension';
 
 /**
  * Core configuration for a skill as stored in SKILL.md files.
@@ -43,6 +44,11 @@ export interface SkillConfig {
    * The markdown body content from SKILL.md (after the frontmatter)
    */
   body: string;
+
+  /**
+   * For extension-level skills: the name of the providing extension
+   */
+  extensionName?: string;
 }
 
 /**

packages/core/src/subagents/subagent-manager.ts

@@ -345,7 +345,7 @@ export class SubagentManager {
     // Normal mode: load from project, user, and builtin levels
     const levelsToCheck: SubagentLevel[] = options.level
       ? [options.level]
-      : ['project', 'user', 'builtin'];
+      : ['project', 'user', 'builtin', 'extension'];
 
     // Check if we should use cache or force refresh
     const shouldUseCache = !options.force && this.subagentsCache !== null;
@@ -389,8 +389,16 @@ export class SubagentManager {
             break;
           case 'level': {
             // Project comes before user, user comes before builtin, session comes last
-            const levelOrder = { project: 0, user: 1, builtin: 2, session: 3 };
-            comparison = levelOrder[a.level] - levelOrder[b.level];
+            const levelOrder = {
+              project: 0,
+              user: 1,
+              builtin: 2,
+              session: 3,
+              extension: 4,
+            };
+            comparison =
+              levelOrder[a.level as SubagentLevel] -
+              levelOrder[b.level as SubagentLevel];
             break;
           }
           default:
@@ -435,7 +443,7 @@ export class SubagentManager {
   private async refreshCache(): Promise<void> {
     const subagentsCache = new Map();
 
-    const levels: SubagentLevel[] = ['project', 'user', 'builtin'];
+    const levels: SubagentLevel[] = ['project', 'user', 'builtin', 'extension'];
 
     for (const level of levels) {
       const levelSubagents = await this.listSubagentsAtLevel(level);
@@ -824,6 +832,14 @@ export class SubagentManager {
     let baseDir = level === 'project' ? projectRoot : homeDir;
     baseDir = path.join(baseDir, QWEN_CONFIG_DIR, AGENT_CONFIG_DIR);
 
+    const subagents = await this.loadSubagentFromDir(baseDir, level);
+    return subagents;
+  }
+
+  async loadSubagentFromDir(
+    baseDir: string,
+    level: SubagentLevel,
+  ): Promise<SubagentConfig[]> {
     try {
       const files = await fs.readdir(baseDir);
       const subagents: SubagentConfig[] = [];

packages/core/src/subagents/types.ts

@@ -8,12 +8,18 @@ import type { Content, FunctionDeclaration } from '@google/genai';
 
 /**
  * Represents the storage level for a subagent configuration.
+ * - 'session': Session-level agents provided at runtime, read-only (highest priority)
  * - 'project': Stored in `.qwen/agents/` within the project directory
  * - 'user': Stored in `~/.qwen/agents/` in the user's home directory
- * - 'builtin': Built-in agents embedded in the codebase, always available
- * - 'session': Session-level agents provided at runtime, read-only
+ * - 'extension': Provided by an installed extension
+ * - 'builtin': Built-in agents embedded in the codebase, always available (lowest priority)
  */
-export type SubagentLevel = 'project' | 'user' | 'builtin' | 'session';
+export type SubagentLevel =
+  | 'session'
+  | 'project'
+  | 'user'
+  | 'extension'
+  | 'builtin';
 
 /**
  * Core configuration for a subagent as stored in Markdown files.
@@ -68,6 +74,11 @@ export interface SubagentConfig {
    * Built-in agents cannot be modified or deleted.
    */
   readonly isBuiltin?: boolean;
+
+  /**
+   * For extension-level subagents: the name of the providing extension
+   */
+  extensionName?: string;
 }
 
 /**

packages/core/src/telemetry/constants.ts

@@ -17,6 +17,7 @@ export const EVENT_EXTENSION_DISABLE = 'qwen-code.extension_disable';
 export const EVENT_EXTENSION_ENABLE = 'qwen-code.extension_enable';
 export const EVENT_EXTENSION_INSTALL = 'qwen-code.extension_install';
 export const EVENT_EXTENSION_UNINSTALL = 'qwen-code.extension_uninstall';
+export const EVENT_EXTENSION_UPDATE = 'qwen-code.extension_update';
 export const EVENT_FLASH_FALLBACK = 'qwen-code.flash_fallback';
 export const EVENT_RIPGREP_FALLBACK = 'qwen-code.ripgrep_fallback';
 export const EVENT_NEXT_SPEAKER_CHECK = 'qwen-code.next_speaker_check';

packages/core/src/telemetry/index.ts

@@ -41,6 +41,8 @@ export {
   logExtensionEnable,
   logExtensionInstallEvent,
   logExtensionUninstall,
+  logExtensionDisable,
+  logExtensionUpdateEvent,
   logRipgrepFallback,
   logNextSpeakerCheck,
   logAuth,

packages/core/src/telemetry/loggers.ts

@@ -38,6 +38,7 @@ import {
   EVENT_INVALID_CHUNK,
   EVENT_AUTH,
   EVENT_SKILL_LAUNCH,
+  EVENT_EXTENSION_UPDATE,
 } from './constants.js';
 import {
   recordApiErrorMetrics,
@@ -79,6 +80,7 @@ import type {
   ExtensionDisableEvent,
   ExtensionEnableEvent,
   ExtensionUninstallEvent,
+  ExtensionUpdateEvent,
   ExtensionInstallEvent,
   ModelSlashCommandEvent,
   SubagentExecutionEvent,
@@ -800,6 +802,32 @@ export function logExtensionUninstall(
   logger.emit(logRecord);
 }
 
+export async function logExtensionUpdateEvent(
+  config: Config,
+  event: ExtensionUpdateEvent,
+): Promise<void> {
+  QwenLogger.getInstance(config)?.logExtensionUpdateEvent(event);
+
+  const attributes: LogAttributes = {
+    ...getCommonAttributes(config),
+    ...event,
+    'event.name': EVENT_EXTENSION_UPDATE,
+    'event.timestamp': new Date().toISOString(),
+    extension_name: event.extension_name,
+    extension_id: event.extension_id,
+    extension_previous_version: event.extension_previous_version,
+    extension_version: event.extension_version,
+    extension_source: event.extension_source,
+  };
+
+  const logger = logs.getLogger(SERVICE_NAME);
+  const logRecord: LogRecord = {
+    body: `Updated extension ${event.extension_name} from ${event.extension_previous_version} to ${event.extension_version}`,
+    attributes,
+  };
+  logger.emit(logRecord);
+}
+
 export function logExtensionEnable(
   config: Config,
   event: ExtensionEnableEvent,

packages/core/src/telemetry/qwen-logger/qwen-logger.ts

@@ -41,6 +41,7 @@ import type {
   SkillLaunchEvent,
   RipgrepFallbackEvent,
   EndSessionEvent,
+  ExtensionUpdateEvent,
 } from '../types.js';
 import type {
   RumEvent,
@@ -739,6 +740,22 @@ export class QwenLogger {
     this.flushIfNeeded();
   }
 
+  logExtensionUpdateEvent(event: ExtensionUpdateEvent): void {
+    const rumEvent = this.createActionEvent('extension', 'extension_update', {
+      properties: {
+        extension_name: event.extension_name,
+        status: event.status,
+        extension_id: event.extension_id,
+        extension_previous_version: event.extension_previous_version,
+        extension_version: event.extension_version,
+        extension_source: event.extension_source,
+      },
+    });
+
+    this.enqueueLogEvent(rumEvent);
+    this.flushIfNeeded();
+  }
+
   logExtensionEnableEvent(event: ExtensionEnableEvent): void {
     const rumEvent = this.createActionEvent('extension', 'extension_enable', {
       properties: {

packages/core/src/telemetry/types.ts

@@ -666,6 +666,35 @@ export class ExtensionUninstallEvent implements BaseTelemetryEvent {
   }
 }
 
+export class ExtensionUpdateEvent implements BaseTelemetryEvent {
+  'event.name': 'extension_update';
+  'event.timestamp': string;
+  extension_name: string;
+  extension_id: string;
+  extension_previous_version: string;
+  extension_version: string;
+  extension_source: string;
+  status: 'success' | 'error';
+
+  constructor(
+    extension_name: string,
+    extension_id: string,
+    extension_version: string,
+    extension_previous_version: string,
+    extension_source: string,
+    status: 'success' | 'error',
+  ) {
+    this['event.name'] = 'extension_update';
+    this['event.timestamp'] = new Date().toISOString();
+    this.extension_name = extension_name;
+    this.extension_id = extension_id;
+    this.extension_version = extension_version;
+    this.extension_previous_version = extension_previous_version;
+    this.extension_source = extension_source;
+    this.status = status;
+  }
+}
+
 export class ExtensionEnableEvent implements BaseTelemetryEvent {
   'event.name': 'extension_enable';
   'event.timestamp': string;

packages/core/src/utils/envVarResolver.test.ts

@@ -0,0 +1,297 @@
+/**
+ * @license
+ * Copyright 2025 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+import { describe, it, expect, beforeEach, afterEach } from 'vitest';
+import {
+  resolveEnvVarsInString,
+  resolveEnvVarsInObject,
+} from './envVarResolver.js';
+
+describe('resolveEnvVarsInString', () => {
+  let originalEnv: NodeJS.ProcessEnv;
+
+  beforeEach(() => {
+    originalEnv = { ...process.env };
+  });
+
+  afterEach(() => {
+    process.env = originalEnv;
+  });
+
+  it('should resolve $VAR_NAME format', () => {
+    process.env['TEST_VAR'] = 'test-value';
+
+    const result = resolveEnvVarsInString('Value is $TEST_VAR');
+
+    expect(result).toBe('Value is test-value');
+  });
+
+  it('should resolve ${VAR_NAME} format', () => {
+    process.env['TEST_VAR'] = 'test-value';
+
+    const result = resolveEnvVarsInString('Value is ${TEST_VAR}');
+
+    expect(result).toBe('Value is test-value');
+  });
+
+  it('should resolve multiple variables in the same string', () => {
+    process.env['HOST'] = 'localhost';
+    process.env['PORT'] = '3000';
+
+    const result = resolveEnvVarsInString('URL: http://$HOST:${PORT}/api');
+
+    expect(result).toBe('URL: http://localhost:3000/api');
+  });
+
+  it('should leave undefined variables unchanged', () => {
+    const result = resolveEnvVarsInString('Value is $UNDEFINED_VAR');
+
+    expect(result).toBe('Value is $UNDEFINED_VAR');
+  });
+
+  it('should leave undefined variables with braces unchanged', () => {
+    const result = resolveEnvVarsInString('Value is ${UNDEFINED_VAR}');
+
+    expect(result).toBe('Value is ${UNDEFINED_VAR}');
+  });
+
+  it('should handle empty string', () => {
+    const result = resolveEnvVarsInString('');
+
+    expect(result).toBe('');
+  });
+
+  it('should handle string without variables', () => {
+    const result = resolveEnvVarsInString('No variables here');
+
+    expect(result).toBe('No variables here');
+  });
+
+  it('should handle mixed defined and undefined variables', () => {
+    process.env['DEFINED'] = 'value';
+
+    const result = resolveEnvVarsInString('$DEFINED and $UNDEFINED mixed');
+
+    expect(result).toBe('value and $UNDEFINED mixed');
+  });
+});
+
+describe('resolveEnvVarsInObject', () => {
+  let originalEnv: NodeJS.ProcessEnv;
+
+  beforeEach(() => {
+    originalEnv = { ...process.env };
+  });
+
+  afterEach(() => {
+    process.env = originalEnv;
+  });
+
+  it('should resolve variables in nested objects', () => {
+    process.env['API_KEY'] = 'secret-123';
+    process.env['DB_URL'] = 'postgresql://localhost/test';
+
+    const config = {
+      server: {
+        auth: {
+          key: '$API_KEY',
+        },
+        database: '${DB_URL}',
+      },
+      port: 3000,
+    };
+
+    const result = resolveEnvVarsInObject(config);
+
+    expect(result).toEqual({
+      server: {
+        auth: {
+          key: 'secret-123',
+        },
+        database: 'postgresql://localhost/test',
+      },
+      port: 3000,
+    });
+  });
+
+  it('should resolve variables in arrays', () => {
+    process.env['ENV'] = 'production';
+    process.env['VERSION'] = '1.0.0';
+
+    const config = {
+      tags: ['$ENV', 'app', '${VERSION}'],
+      metadata: {
+        env: '$ENV',
+      },
+    };
+
+    const result = resolveEnvVarsInObject(config);
+
+    expect(result).toEqual({
+      tags: ['production', 'app', '1.0.0'],
+      metadata: {
+        env: 'production',
+      },
+    });
+  });
+
+  it('should preserve non-string types', () => {
+    const config = {
+      enabled: true,
+      count: 42,
+      value: null,
+      data: undefined,
+      tags: ['item1', 'item2'],
+    };
+
+    const result = resolveEnvVarsInObject(config);
+
+    expect(result).toEqual(config);
+  });
+
+  it('should handle MCP server config structure', () => {
+    process.env['API_TOKEN'] = 'token-123';
+    process.env['SERVER_PORT'] = '8080';
+
+    const extensionConfig = {
+      name: 'test-extension',
+      version: '1.0.0',
+      mcpServers: {
+        'test-server': {
+          command: 'node',
+          args: ['server.js', '--port', '${SERVER_PORT}'],
+          env: {
+            API_KEY: '$API_TOKEN',
+            STATIC_VALUE: 'unchanged',
+          },
+          timeout: 5000,
+        },
+      },
+    };
+
+    const result = resolveEnvVarsInObject(extensionConfig);
+
+    expect(result).toEqual({
+      name: 'test-extension',
+      version: '1.0.0',
+      mcpServers: {
+        'test-server': {
+          command: 'node',
+          args: ['server.js', '--port', '8080'],
+          env: {
+            API_KEY: 'token-123',
+            STATIC_VALUE: 'unchanged',
+          },
+          timeout: 5000,
+        },
+      },
+    });
+  });
+
+  it('should handle empty and null values', () => {
+    const config = {
+      empty: '',
+      nullValue: null,
+      undefinedValue: undefined,
+      zero: 0,
+      false: false,
+    };
+
+    const result = resolveEnvVarsInObject(config);
+
+    expect(result).toEqual(config);
+  });
+
+  it('should handle circular references in objects without infinite recursion', () => {
+    process.env['TEST_VAR'] = 'resolved-value';
+
+    type ConfigWithCircularRef = {
+      name: string;
+      value: number;
+      self?: ConfigWithCircularRef;
+    };
+
+    const config: ConfigWithCircularRef = {
+      name: '$TEST_VAR',
+      value: 42,
+    };
+    // Create circular reference
+    config.self = config;
+
+    const result = resolveEnvVarsInObject(config);
+
+    expect(result.name).toBe('resolved-value');
+    expect(result.value).toBe(42);
+    expect(result.self).toBeDefined();
+    expect(result.self?.name).toBe('$TEST_VAR'); // Circular reference should be shallow copied
+    expect(result.self?.value).toBe(42);
+    // Verify it doesn't create infinite recursion by checking it's not the same object
+    expect(result.self).not.toBe(result);
+  });
+
+  it('should handle circular references in arrays without infinite recursion', () => {
+    process.env['ARRAY_VAR'] = 'array-value';
+
+    type ArrayWithCircularRef = Array<string | number | ArrayWithCircularRef>;
+    const arr: ArrayWithCircularRef = ['$ARRAY_VAR', 123];
+    // Create circular reference
+    arr.push(arr);
+
+    const result = resolveEnvVarsInObject(arr) as ArrayWithCircularRef;
+
+    expect(result[0]).toBe('array-value');
+    expect(result[1]).toBe(123);
+    expect(Array.isArray(result[2])).toBe(true);
+    const subArray = result[2] as ArrayWithCircularRef;
+    expect(subArray[0]).toBe('$ARRAY_VAR'); // Circular reference should be shallow copied
+    expect(subArray[1]).toBe(123);
+    // Verify it doesn't create infinite recursion
+    expect(result[2]).not.toBe(result);
+  });
+
+  it('should handle complex nested circular references', () => {
+    process.env['NESTED_VAR'] = 'nested-resolved';
+
+    type ObjWithRef = {
+      name: string;
+      id: number;
+      ref?: ObjWithRef;
+    };
+
+    const obj1: ObjWithRef = { name: '$NESTED_VAR', id: 1 };
+    const obj2: ObjWithRef = { name: 'static', id: 2 };
+
+    // Create cross-references
+    obj1.ref = obj2;
+    obj2.ref = obj1;
+
+    const config = {
+      primary: obj1,
+      secondary: obj2,
+      value: '$NESTED_VAR',
+    };
+
+    const result = resolveEnvVarsInObject(config);
+
+    expect(result.value).toBe('nested-resolved');
+    expect(result.primary.name).toBe('nested-resolved');
+    expect(result.primary.id).toBe(1);
+    expect(result.secondary.name).toBe('static');
+    expect(result.secondary.id).toBe(2);
+
+    // Check that circular references are handled (shallow copied)
+    expect(result.primary.ref).toBeDefined();
+    expect(result.secondary.ref).toBeDefined();
+    expect(result.primary.ref?.name).toBe('static'); // Should be shallow copy
+    expect(result.secondary.ref?.name).toBe('nested-resolved'); // The shallow copy still gets processed
+
+    // Most importantly: verify no infinite recursion by checking objects are different
+    expect(result.primary.ref).not.toBe(result.secondary);
+    expect(result.secondary.ref).not.toBe(result.primary);
+    expect(result.primary).not.toBe(obj1); // New object created
+    expect(result.secondary).not.toBe(obj2); // New object created
+  });
+});

packages/core/src/utils/envVarResolver.ts

@@ -0,0 +1,126 @@
+/**
+ * @license
+ * Copyright 2025 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+/**
+ * Resolves environment variables in a string.
+ * Replaces $VAR_NAME and ${VAR_NAME} with their corresponding environment variable values.
+ * If the environment variable is not defined, the original placeholder is preserved.
+ *
+ * @param value - The string that may contain environment variable placeholders
+ * @returns The string with environment variables resolved
+ *
+ * @example
+ * resolveEnvVarsInString("Token: $API_KEY") // Returns "Token: secret-123"
+ * resolveEnvVarsInString("URL: ${BASE_URL}/api") // Returns "URL: https://api.example.com/api"
+ * resolveEnvVarsInString("Missing: $UNDEFINED_VAR") // Returns "Missing: $UNDEFINED_VAR"
+ */
+export function resolveEnvVarsInString(
+  value: string,
+  customEnv?: Record<string, string>,
+): string {
+  const envVarRegex = /\$(?:(\w+)|{([^}]+)})/g; // Find $VAR_NAME or ${VAR_NAME}
+  return value.replace(envVarRegex, (match, varName1, varName2) => {
+    const varName = varName1 || varName2;
+    if (customEnv && typeof customEnv[varName] === 'string') {
+      return customEnv[varName];
+    }
+    if (process && process.env && typeof process.env[varName] === 'string') {
+      return process.env[varName]!;
+    }
+    return match;
+  });
+}
+
+/**
+ * Recursively resolves environment variables in an object of any type.
+ * Handles strings, arrays, nested objects, and preserves other primitive types.
+ * Protected against circular references using a WeakSet to track visited objects.
+ *
+ * @param obj - The object to process for environment variable resolution
+ * @returns A new object with environment variables resolved
+ *
+ * @example
+ * const config = {
+ *   server: {
+ *     host: "$HOST",
+ *     port: "${PORT}",
+ *     enabled: true,
+ *     tags: ["$ENV", "api"]
+ *   }
+ * };
+ * const resolved = resolveEnvVarsInObject(config);
+ */
+export function resolveEnvVarsInObject<T>(
+  obj: T,
+  customEnv?: Record<string, string>,
+): T {
+  return resolveEnvVarsInObjectInternal(obj, new WeakSet(), customEnv);
+}
+
+/**
+ * Internal implementation of resolveEnvVarsInObject with circular reference protection.
+ *
+ * @param obj - The object to process
+ * @param visited - WeakSet to track visited objects and prevent circular references
+ * @returns A new object with environment variables resolved
+ */
+function resolveEnvVarsInObjectInternal<T>(
+  obj: T,
+  visited: WeakSet<object>,
+  customEnv?: Record<string, string>,
+): T {
+  if (
+    obj === null ||
+    obj === undefined ||
+    typeof obj === 'boolean' ||
+    typeof obj === 'number'
+  ) {
+    return obj;
+  }
+
+  if (typeof obj === 'string') {
+    return resolveEnvVarsInString(obj, customEnv) as unknown as T;
+  }
+
+  if (Array.isArray(obj)) {
+    // Check for circular reference
+    if (visited.has(obj)) {
+      // Return a shallow copy to break the cycle
+      return [...obj] as unknown as T;
+    }
+
+    visited.add(obj);
+    const result = obj.map((item) =>
+      resolveEnvVarsInObjectInternal(item, visited, customEnv),
+    ) as unknown as T;
+    visited.delete(obj);
+    return result;
+  }
+
+  if (typeof obj === 'object') {
+    // Check for circular reference
+    if (visited.has(obj as object)) {
+      // Return a shallow copy to break the cycle
+      return { ...obj } as T;
+    }
+
+    visited.add(obj as object);
+    const newObj = { ...obj } as T;
+    for (const key in newObj) {
+      if (Object.prototype.hasOwnProperty.call(newObj, key)) {
+        newObj[key] = resolveEnvVarsInObjectInternal(
+          newObj[key],
+          visited,
+          customEnv,
+        );
+      }
+    }
+    visited.delete(obj as object);
+    return newObj;
+  }
+
+  return obj;
+}

packages/core/src/utils/toml-to-markdown-converter.test.ts

@@ -0,0 +1,103 @@
+/**
+ * @license
+ * Copyright 2025 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+import { describe, it, expect } from 'vitest';
+import {
+  convertTomlToMarkdown,
+  isTomlFormat,
+} from './toml-to-markdown-converter.js';
+
+describe('convertTomlToMarkdown', () => {
+  it('should convert TOML with description to Markdown', () => {
+    const tomlContent = `prompt = "This is a test prompt"
+description = "Test command"`;
+
+    const result = convertTomlToMarkdown(tomlContent);
+
+    expect(result).toBe(`---
+description: Test command
+---
+
+This is a test prompt
+`);
+  });
+
+  it('should convert TOML without description to Markdown', () => {
+    const tomlContent = `prompt = "Simple prompt"`;
+
+    const result = convertTomlToMarkdown(tomlContent);
+
+    expect(result).toBe('Simple prompt\n');
+  });
+
+  it('should handle multi-line prompts', () => {
+    const tomlContent = `prompt = """
+This is a multi-line
+prompt with several
+lines of text.
+"""
+description = "Multi-line test"`;
+
+    const result = convertTomlToMarkdown(tomlContent);
+
+    expect(result).toContain('This is a multi-line');
+    expect(result).toContain('description: Multi-line test');
+  });
+
+  it('should throw error for invalid TOML', () => {
+    const invalidToml = 'this is not valid toml {[}]';
+
+    expect(() => convertTomlToMarkdown(invalidToml)).toThrow(
+      'Failed to parse TOML',
+    );
+  });
+
+  it('should throw error if prompt field is missing', () => {
+    const tomlWithoutPrompt = 'description = "No prompt here"';
+
+    expect(() => convertTomlToMarkdown(tomlWithoutPrompt)).toThrow(
+      'TOML must contain a "prompt" field',
+    );
+  });
+
+  it('should handle special characters in description', () => {
+    const tomlContent = `prompt = "Test prompt"
+description = "Command with: special, characters!"`;
+
+    const result = convertTomlToMarkdown(tomlContent);
+
+    expect(result).toContain('description: Command with: special, characters!');
+  });
+});
+
+describe('isTomlFormat', () => {
+  it('should return true for valid TOML', () => {
+    const validToml = `prompt = "Test"
+description = "Description"`;
+
+    expect(isTomlFormat(validToml)).toBe(true);
+  });
+
+  it('should return false for invalid TOML', () => {
+    const invalidToml = '{ this is not toml }';
+
+    expect(isTomlFormat(invalidToml)).toBe(false);
+  });
+
+  it('should return true for empty TOML', () => {
+    expect(isTomlFormat('')).toBe(true);
+  });
+
+  it('should return false for Markdown format', () => {
+    const markdown = `---
+description: Test
+---
+
+Prompt content`;
+
+    expect(isTomlFormat(markdown)).toBe(false);
+  });
+});

packages/core/src/utils/toml-to-markdown-converter.ts

@@ -0,0 +1,74 @@
+/**
+ * @license
+ * Copyright 2025 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+/**
+ * Converts TOML command files to Markdown format.
+ */
+
+import toml from '@iarna/toml';
+
+export interface TomlCommandFormat {
+  prompt: string;
+  description?: string;
+}
+
+/**
+ * Converts a TOML command content to Markdown format.
+ * @param tomlContent The TOML file content
+ * @returns The equivalent Markdown content
+ * @throws Error if TOML parsing fails
+ */
+export function convertTomlToMarkdown(tomlContent: string): string {
+  let parsed: unknown;
+  try {
+    parsed = toml.parse(tomlContent);
+  } catch (error) {
+    throw new Error(
+      `Failed to parse TOML: ${error instanceof Error ? error.message : String(error)}`,
+    );
+  }
+
+  if (typeof parsed !== 'object' || parsed === null) {
+    throw new Error('TOML content must be an object');
+  }
+
+  const obj = parsed as Record<string, unknown>;
+
+  if (typeof obj['prompt'] !== 'string') {
+    throw new Error('TOML must contain a "prompt" field');
+  }
+
+  const prompt = obj['prompt'];
+  const description =
+    typeof obj['description'] === 'string' ? obj['description'] : undefined;
+
+  // Generate Markdown
+  if (description) {
+    return `---
+description: ${description}
+---
+
+${prompt}
+`;
+  } else {
+    // No frontmatter if no description
+    return `${prompt}\n`;
+  }
+}
+
+/**
+ * Checks if a file content is in TOML format by attempting to parse it.
+ * @param content File content to check
+ * @returns true if content is valid TOML
+ */
+export function isTomlFormat(content: string): boolean {
+  try {
+    toml.parse(content);
+    return true;
+  } catch {
+    return false;
+  }
+}

packages/sdk-typescript/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@qwen-code/sdk",
-  "version": "0.1.1",
+  "version": "0.1.0",
   "description": "TypeScript SDK for programmatic access to qwen-code CLI",
   "main": "./dist/index.cjs",
   "module": "./dist/index.mjs",